Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC9.54□□□□□ -0.889e-13■■■□□ 14.9
U2AF1Q01081 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC8.49□□□□□ -1.059e-13■■■□□ 14.9
U2AF1Q01081 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC7.77□□□□□ -1.179e-13■■■□□ 14.9
U2AF1Q01081 POGZ-202ENST00000358476 6459 ntTSL 27.61□□□□□ -1.199e-13■■■□□ 14.9
U2AF1Q01081 POGZ-217ENST00000529669 949 ntTSL 57.45□□□□□ -1.229e-13■■■□□ 14.9
U2AF1Q01081 YTHDF2-206ENST00000478283 2594 ntTSL 1 (best)24.09■■□□□ 1.451e-11■■■□□ 14.9
U2AF1Q01081 YTHDF2-203ENST00000474884 864 ntTSL 523.78■■□□□ 1.41e-11■■■□□ 14.9
U2AF1Q01081 YTHDF2-207ENST00000496288 879 ntTSL 223.4■■□□□ 1.341e-11■■■□□ 14.9
U2AF1Q01081 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.951e-11■■■□□ 14.9
U2AF1Q01081 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.521e-11■■■□□ 14.9
U2AF1Q01081 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC15.84■□□□□ 0.131e-11■■■□□ 14.9
U2AF1Q01081 CASC19-272ENST00000641991 1360 nt15.32■□□□□ 0.041e-15■■■□□ 14.9
U2AF1Q01081 CASC19-229ENST00000641418 1373 ntBASIC13.98□□□□□ -0.171e-15■■■□□ 14.9
U2AF1Q01081 CASC19-230ENST00000641421 1530 ntBASIC13.98□□□□□ -0.171e-15■■■□□ 14.9
U2AF1Q01081 CASC19-247ENST00000641642 1107 nt13.72□□□□□ -0.211e-15■■■□□ 14.9
U2AF1Q01081 CASC19-235ENST00000641496 1154 nt12.91□□□□□ -0.341e-15■■■□□ 14.9
U2AF1Q01081 CASC19-263ENST00000641880 1404 nt12.32□□□□□ -0.441e-15■■■□□ 14.9
U2AF1Q01081 CASC19-254ENST00000641719 1443 nt11.85□□□□□ -0.511e-15■■■□□ 14.9
U2AF1Q01081 CASC19-273ENST00000642010 925 nt11.62□□□□□ -0.551e-15■■■□□ 14.9
U2AF1Q01081 CASC19-214ENST00000641171 1493 nt11.02□□□□□ -0.651e-15■■■□□ 14.9
U2AF1Q01081 CASC19-252ENST00000641704 1313 nt10.77□□□□□ -0.691e-15■■■□□ 14.9
U2AF1Q01081 CASC19-226ENST00000641392 1832 nt10.65□□□□□ -0.71e-15■■■□□ 14.9
U2AF1Q01081 CASC19-216ENST00000641179 1140 nt10.56□□□□□ -0.721e-15■■■□□ 14.9
U2AF1Q01081 CASC19-240ENST00000641578 1061 nt10.27□□□□□ -0.771e-15■■■□□ 14.9
U2AF1Q01081 CASC19-257ENST00000641786 816 nt10.09□□□□□ -0.791e-15■■■□□ 14.9
U2AF1Q01081 CASC19-270ENST00000641965 2329 nt9.99□□□□□ -0.811e-15■■■□□ 14.9
U2AF1Q01081 CASC19-266ENST00000641934 1050 nt9.99□□□□□ -0.811e-15■■■□□ 14.9
U2AF1Q01081 CASC19-250ENST00000641696 886 nt9.9□□□□□ -0.821e-15■■■□□ 14.9
U2AF1Q01081 CASC19-210ENST00000641073 1065 nt9.9□□□□□ -0.821e-15■■■□□ 14.9
U2AF1Q01081 CASC19-219ENST00000641262 832 nt9.9□□□□□ -0.821e-15■■■□□ 14.9
U2AF1Q01081 CASC19-207ENST00000641029 1047 nt9.88□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-220ENST00000641298 974 nt9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-227ENST00000641411 1285 ntBASIC9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-224ENST00000641362 1146 nt9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-239ENST00000641547 915 nt9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-276ENST00000642077 993 nt9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-208ENST00000641056 1292 ntBASIC9.87□□□□□ -0.831e-15■■■□□ 14.9
U2AF1Q01081 CASC19-283ENST00000642134 870 nt9.7□□□□□ -0.861e-15■■■□□ 14.9
U2AF1Q01081 CASC19-211ENST00000641106 1184 nt9.54□□□□□ -0.881e-15■■■□□ 14.9
U2AF1Q01081 CASC19-232ENST00000641480 1244 ntBASIC9.32□□□□□ -0.921e-15■■■□□ 14.9
U2AF1Q01081 CASC19-218ENST00000641218 1522 nt9.25□□□□□ -0.931e-15■■■□□ 14.9
U2AF1Q01081 CASC19-205ENST00000641013 1411 ntBASIC9.15□□□□□ -0.941e-15■■■□□ 14.9
U2AF1Q01081 CASC19-212ENST00000641153 1287 ntBASIC9.13□□□□□ -0.951e-15■■■□□ 14.9
U2AF1Q01081 CASC19-249ENST00000641681 871 nt9.02□□□□□ -0.971e-15■■■□□ 14.9
U2AF1Q01081 CASC19-253ENST00000641706 818 nt8.98□□□□□ -0.971e-15■■■□□ 14.9
U2AF1Q01081 CASC19-244ENST00000641604 1251 nt8.82□□□□□ -11e-15■■■□□ 14.9
U2AF1Q01081 CASC19-228ENST00000641414 1684 ntBASIC8.73□□□□□ -1.011e-15■■■□□ 14.9
U2AF1Q01081 CASC19-282ENST00000642126 1206 nt8.61□□□□□ -1.031e-15■■■□□ 14.9
U2AF1Q01081 CASC19-246ENST00000641625 1606 ntBASIC8.54□□□□□ -1.041e-15■■■□□ 14.9
U2AF1Q01081 CASC19-274ENST00000642018 970 ntBASIC8.42□□□□□ -1.061e-15■■■□□ 14.9
U2AF1Q01081 CASC19-236ENST00000641510 1384 nt8.35□□□□□ -1.071e-15■■■□□ 14.9
U2AF1Q01081 CASC19-277ENST00000642082 1545 nt8.28□□□□□ -1.081e-15■■■□□ 14.9
U2AF1Q01081 CASC19-251ENST00000641701 2204 nt8.2□□□□□ -1.11e-15■■■□□ 14.9
U2AF1Q01081 CASC19-237ENST00000641514 1074 nt8.16□□□□□ -1.11e-15■■■□□ 14.9
U2AF1Q01081 CASC19-234ENST00000641488 1157 nt8.16□□□□□ -1.11e-15■■■□□ 14.9
U2AF1Q01081 CASC19-238ENST00000641523 1558 ntBASIC8.09□□□□□ -1.111e-15■■■□□ 14.9
U2AF1Q01081 CASC19-243ENST00000641588 1546 ntBASIC7.94□□□□□ -1.141e-15■■■□□ 14.9
U2AF1Q01081 CASC19-245ENST00000641615 770 nt7.86□□□□□ -1.151e-15■■■□□ 14.9
U2AF1Q01081 CASC19-255ENST00000641733 1385 ntBASIC7.81□□□□□ -1.161e-15■■■□□ 14.9
U2AF1Q01081 CASC19-248ENST00000641674 1356 ntBASIC7.41□□□□□ -1.221e-15■■■□□ 14.9
U2AF1Q01081 CASC19-233ENST00000641487 966 nt7.27□□□□□ -1.251e-15■■■□□ 14.9
U2AF1Q01081 CASC19-264ENST00000641912 1184 ntBASIC7.27□□□□□ -1.251e-15■■■□□ 14.9
U2AF1Q01081 CASC19-213ENST00000641162 1091 nt7.08□□□□□ -1.281e-15■■■□□ 14.9
U2AF1Q01081 CASC19-269ENST00000641964 1415 nt6.96□□□□□ -1.31e-15■■■□□ 14.9
U2AF1Q01081 CASC19-260ENST00000641828 2001 ntBASIC6.89□□□□□ -1.311e-15■■■□□ 14.9
U2AF1Q01081 CASC19-281ENST00000642118 1554 ntBASIC6.84□□□□□ -1.311e-15■■■□□ 14.9
U2AF1Q01081 CASC19-222ENST00000641321 1173 ntBASIC6.8□□□□□ -1.321e-15■■■□□ 14.9
U2AF1Q01081 CASC19-225ENST00000641365 2219 nt6.77□□□□□ -1.331e-15■■■□□ 14.9
U2AF1Q01081 CASC19-221ENST00000641309 1382 ntBASIC6.75□□□□□ -1.331e-15■■■□□ 14.9
U2AF1Q01081 CASC19-256ENST00000641746 958 nt6.69□□□□□ -1.341e-15■■■□□ 14.9
U2AF1Q01081 CASC19-267ENST00000641944 1117 nt6.56□□□□□ -1.361e-15■■■□□ 14.9
U2AF1Q01081 CASC19-242ENST00000641584 2114 nt6.5□□□□□ -1.371e-15■■■□□ 14.9
U2AF1Q01081 CASC19-284ENST00000642142 1868 ntBASIC6.22□□□□□ -1.411e-15■■■□□ 14.9
U2AF1Q01081 CASC19-215ENST00000641174 959 nt6.19□□□□□ -1.421e-15■■■□□ 14.9
U2AF1Q01081 CASC19-231ENST00000641425 1156 nt6.12□□□□□ -1.431e-15■■■□□ 14.9
U2AF1Q01081 CASC19-204ENST00000641001 2055 ntBASIC5.87□□□□□ -1.471e-15■■■□□ 14.9
U2AF1Q01081 CASC19-278ENST00000642088 2091 nt5.49□□□□□ -1.531e-15■■■□□ 14.9
U2AF1Q01081 CASC19-271ENST00000641968 842 nt5.44□□□□□ -1.541e-15■■■□□ 14.9
U2AF1Q01081 CASC19-262ENST00000641867 866 nt5.34□□□□□ -1.551e-15■■■□□ 14.9
U2AF1Q01081 CASC19-209ENST00000641060 679 nt4.58□□□□□ -1.681e-15■■■□□ 14.9
U2AF1Q01081 CASC19-202ENST00000521815 561 ntTSL 34.12□□□□□ -1.751e-15■■■□□ 14.9
U2AF1Q01081 CASC19-280ENST00000642102 1351 ntBASIC3.74□□□□□ -1.811e-15■■■□□ 14.9
U2AF1Q01081 CASC19-217ENST00000641187 875 nt3.41□□□□□ -1.861e-15■■■□□ 14.9
U2AF1Q01081 U2SURP-212ENST00000488587 866 ntTSL 35.03□□□□□ -1.66e-10■■■□□ 14.9
U2AF1Q01081 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC32.41■■■□□ 2.782e-6■■■□□ 14.8
U2AF1Q01081 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.56■■□□□ 1.042e-6■■■□□ 14.8
U2AF1Q01081 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.792e-6■■■□□ 14.8
U2AF1Q01081 RCOR3-211ENST00000528926 1497 ntTSL 218.15■□□□□ 0.52e-6■■■□□ 14.8
U2AF1Q01081 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC7.01□□□□□ -1.292e-6■■■□□ 14.8
U2AF1Q01081 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC28.09■■■□□ 2.099e-8■■■□□ 14.8
U2AF1Q01081 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC26.62■■□□□ 1.851e-6■■■□□ 14.8
U2AF1Q01081 GOLGA4-202ENST00000361924 7772 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.031e-6■■■□□ 14.8
U2AF1Q01081 GOLGA4-201ENST00000356847 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.081e-6■■■□□ 14.8
U2AF1Q01081 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.721e-8■■■□□ 14.8
U2AF1Q01081 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.481e-8■■■□□ 14.8
U2AF1Q01081 RNF145-209ENST00000520638 2340 ntTSL 2 BASIC10.68□□□□□ -0.71e-8■■■□□ 14.8
U2AF1Q01081 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC9.86□□□□□ -0.831e-8■■■□□ 14.8
U2AF1Q01081 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC9.27□□□□□ -0.931e-8■■■□□ 14.8
U2AF1Q01081 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.171e-8■■■□□ 14.8
U2AF1Q01081 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.57□□□□□ -1.361e-8■■■□□ 14.8
Retrieved 100 of 10,096 protein–RNA pairs in 69.8 ms