RNA–Protein interactions for RNA: ENST00000641828.1

CASC19-260, Transcript of cancer susceptibility 19, humanhuman

BASIC

Gene CASC19, Length 2,001 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC19-260ENST00000641828 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
CASC19-260ENST00000641828 AEBP2Q6ZN18 517 aaPredicted RBP16.99■□□□□ 0.31
CASC19-260ENST00000641828 PHF23Q9BUL5 403 aaPredicted RBP15.22■□□□□ 0.03
CASC19-260ENST00000641828 SENP3Q9H4L4 574 aaPredicted RBP14.3□□□□□ -0.12
CASC19-260ENST00000641828 PLPPR3Q6T4P5 718 aa14.26□□□□□ -0.13
CASC19-260ENST00000641828 ADRA2BP18089 450 aa13.35□□□□□ -0.27
CASC19-260ENST00000641828 PPP6R1Q9UPN7 881 aa13.22□□□□□ -0.29
CASC19-260ENST00000641828 FOXD1Q16676 465 aa13.2□□□□□ -0.3
CASC19-260ENST00000641828 KCNA4P22459 653 aa13.1□□□□□ -0.31
CASC19-260ENST00000641828 EHMT2Q96KQ7 1210 aa12.98□□□□□ -0.33
CASC19-260ENST00000641828 PPP4R3CPQ6ZMV5 832 aa12.65□□□□□ -0.38
CASC19-260ENST00000641828 PIAS4Q8N2W9 510 aaPredicted RBP12.62□□□□□ -0.39
CASC19-260ENST00000641828 SLC4A1APQ9BWU0 796 aaKnown RBP12.58□□□□□ -0.4
CASC19-260ENST00000641828 CSRNP3Q8WYN3 585 aa12.52□□□□□ -0.4
CASC19-260ENST00000641828 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
CASC19-260ENST00000641828 NPM3O75607 178 aaKnown RBP12.33□□□□□ -0.43
CASC19-260ENST00000641828 POTEDQ86YR6 584 aa12.33□□□□□ -0.43
CASC19-260ENST00000641828 CNKSR2Q8WXI2 1034 aa12.15□□□□□ -0.46
CASC19-260ENST00000641828 SCAF1Q9H7N4 1312 aaKnown RBP12.09□□□□□ -0.47
CASC19-260ENST00000641828 ZBTB22O15209 634 aa12.08□□□□□ -0.48
CASC19-260ENST00000641828 MSH5O43196 834 aa11.91□□□□□ -0.5
CASC19-260ENST00000641828 FOXD4L1Q9NU39 408 aa11.86□□□□□ -0.51
CASC19-260ENST00000641828 DNAJC5BQ9UF47 199 aa11.85□□□□□ -0.51
CASC19-260ENST00000641828 MAPK8IP2Q13387 824 aaPredicted RBP11.82□□□□□ -0.52
CASC19-260ENST00000641828 RNF216Q9NWF9 866 aaPredicted RBP11.76□□□□□ -0.53
CASC19-260ENST00000641828 HOXD11P31277 338 aaPredicted RBP11.53□□□□□ -0.56
CASC19-260ENST00000641828 DMRT2Q9Y5R5 561 aa11.52□□□□□ -0.56
CASC19-260ENST00000641828 SLC4A2P04920 1241 aa11.48□□□□□ -0.57
CASC19-260ENST00000641828 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
CASC19-260ENST00000641828 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
CASC19-260ENST00000641828 ATXN8OSP0DMR3 200 aa11.38□□□□□ -0.59
CASC19-260ENST00000641828 MYCNP04198 464 aaPredicted RBP11.37□□□□□ -0.59
CASC19-260ENST00000641828 SLC24A1O60721 1099 aa11.35□□□□□ -0.59
CASC19-260ENST00000641828 FKBP8Q14318 412 aa11.28□□□□□ -0.6
CASC19-260ENST00000641828 NISCHQ9Y2I1 1504 aa11.22□□□□□ -0.61
CASC19-260ENST00000641828 ABCC9O60706 1549 aa11.04□□□□□ -0.64
CASC19-260ENST00000641828 ATF5Q9Y2D1 282 aaPredicted RBP11.04□□□□□ -0.64
CASC19-260ENST00000641828 DCAF8L1A6NGE4 600 aa11□□□□□ -0.65
CASC19-260ENST00000641828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.99□□□□□ -0.65
CASC19-260ENST00000641828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.96□□□□□ -0.65
CASC19-260ENST00000641828 HNRNPUL2Q1KMD3 747 aaKnown RBP10.96□□□□□ -0.65
CASC19-260ENST00000641828 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.66
CASC19-260ENST00000641828 U3KPZ7 1027 aaPredicted RBP10.9□□□□□ -0.66
CASC19-260ENST00000641828 ZNF219Q9P2Y4 722 aaPredicted RBP10.77□□□□□ -0.69
CASC19-260ENST00000641828 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
CASC19-260ENST00000641828 APLP2Q06481 763 aa10.68□□□□□ -0.7
CASC19-260ENST00000641828 SPDYE4A6NLX3 237 aa10.65□□□□□ -0.7
CASC19-260ENST00000641828 MKRN4PQ13434 485 aaPredicted RBP10.58□□□□□ -0.72
CASC19-260ENST00000641828 PROM2Q8N271 834 aa10.57□□□□□ -0.72
CASC19-260ENST00000641828 VASPP50552 380 aaPredicted RBP10.54□□□□□ -0.72
CASC19-260ENST00000641828 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 FBLN2P98095 1184 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 DNAJC5Q9H3Z4 198 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 IFNLR1Q8IU57 520 aaPredicted RBP10.45□□□□□ -0.74
CASC19-260ENST00000641828 TRHP20396 242 aaPredicted RBP10.44□□□□□ -0.74
CASC19-260ENST00000641828 POLA2Q14181 598 aa10.41□□□□□ -0.74
CASC19-260ENST00000641828 SPINK5Q9NQ38 1064 aaPredicted RBP10.41□□□□□ -0.74
CASC19-260ENST00000641828 DCAF8L2P0C7V8 631 aa10.4□□□□□ -0.74
CASC19-260ENST00000641828 CCDC180Q9P1Z9 1646 aa10.39□□□□□ -0.75
CASC19-260ENST00000641828 HAP1P54257 671 aaPredicted RBP10.37□□□□□ -0.75
CASC19-260ENST00000641828 PKD2Q13563 968 aa10.34□□□□□ -0.75
CASC19-260ENST00000641828 CAPN15O75808 1086 aa10.33□□□□□ -0.76
CASC19-260ENST00000641828 RNF39Q9H2S5 420 aa10.28□□□□□ -0.76
CASC19-260ENST00000641828 ZBTB12Q9Y330 459 aaPredicted RBP10.28□□□□□ -0.76
CASC19-260ENST00000641828 RB1CC1Q8TDY2 1594 aa10.22□□□□□ -0.77
CASC19-260ENST00000641828 BCANQ96GW7 911 aa10.22□□□□□ -0.77
CASC19-260ENST00000641828 VSIG10Q8N0Z9 540 aa10.21□□□□□ -0.77
CASC19-260ENST00000641828 KLHL34Q8N239 644 aa10.21□□□□□ -0.78
CASC19-260ENST00000641828 SPOCK2Q92563 424 aa10.21□□□□□ -0.78
CASC19-260ENST00000641828 ABCB7O75027 752 aa10.2□□□□□ -0.78
CASC19-260ENST00000641828 C1QBPQ07021 282 aaKnown RBP10.18□□□□□ -0.78
CASC19-260ENST00000641828 PABPN1Q86U42 306 aaKnown RBP eCLIP10.18□□□□□ -0.78
CASC19-260ENST00000641828 ECM2O94769 699 aaPredicted RBP10.16□□□□□ -0.78
CASC19-260ENST00000641828 BBXQ8WY36 941 aaPredicted RBP10.15□□□□□ -0.78
CASC19-260ENST00000641828 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.15□□□□□ -0.78
CASC19-260ENST00000641828 STAG3Q9UJ98 1225 aa10.14□□□□□ -0.79
CASC19-260ENST00000641828 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
CASC19-260ENST00000641828 NPM1P06748 294 aaKnown RBP eCLIP10.11□□□□□ -0.79
CASC19-260ENST00000641828 PLCD3Q8N3E9 789 aa10.09□□□□□ -0.79
CASC19-260ENST00000641828 PAXIP1Q6ZW49 1069 aaPredicted RBP10.09□□□□□ -0.79
CASC19-260ENST00000641828 PRKCSHP14314 528 aaPredicted RBP10.08□□□□□ -0.8
CASC19-260ENST00000641828 TAOK2Q9UL54 1235 aa10.08□□□□□ -0.8
CASC19-260ENST00000641828 KDM2AQ9Y2K7 1162 aa10.07□□□□□ -0.8
CASC19-260ENST00000641828 CFAP44Q96MT7 982 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE2BA6NHP3 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE6P0CI01 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE2Q495Y8 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SSUH2Q9Y2M2 353 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 RGL2O15211 777 aa10.05□□□□□ -0.8
CASC19-260ENST00000641828 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
CASC19-260ENST00000641828 MIER1Q8N108 512 aa10.03□□□□□ -0.8
CASC19-260ENST00000641828 UNC13AQ9UPW8 1703 aa10.01□□□□□ -0.81
CASC19-260ENST00000641828 CECR2Q9BXF3 1484 aa10.01□□□□□ -0.81
CASC19-260ENST00000641828 DSG3P32926 999 aa10□□□□□ -0.81
CASC19-260ENST00000641828 SPRYD3Q8NCJ5 442 aa9.98□□□□□ -0.81
CASC19-260ENST00000641828 NACADO15069 1562 aa9.97□□□□□ -0.81
CASC19-260ENST00000641828 CIZ1Q9ULV3 898 aaPredicted RBP9.94□□□□□ -0.82
CASC19-260ENST00000641828 CC2D2AQ9P2K1 1620 aa9.94□□□□□ -0.82
CASC19-260ENST00000641828 TPRNQ4KMQ1 711 aa9.94□□□□□ -0.82
CASC19-260ENST00000641828 TSHZ2Q9NRE2 1034 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms