RNA–Protein interactions for RNA: ENST00000641523.1

CASC19-238, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,558 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-238	ENST00000641523	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.67	■■□□□ 1.22
CASC19-238	ENST00000641523	CHIC1	Q5VXU3	224 aa		22.64	■■□□□ 1.22
CASC19-238	ENST00000641523	PHF23	Q9BUL5	403 aa	Predicted RBP	20.03	■□□□□ 0.8
CASC19-238	ENST00000641523	SENP3	Q9H4L4	574 aa	Predicted RBP	19.05	■□□□□ 0.64
CASC19-238	ENST00000641523	PLPPR3	Q6T4P5	718 aa		18.61	■□□□□ 0.57
CASC19-238	ENST00000641523	FOXD1	Q16676	465 aa		17.67	■□□□□ 0.42
CASC19-238	ENST00000641523	ADRA2B	P18089	450 aa		17.53	■□□□□ 0.4
CASC19-238	ENST00000641523	PPP6R1	Q9UPN7	881 aa		17.51	■□□□□ 0.39
CASC19-238	ENST00000641523	KCNA4	P22459	653 aa		16.83	■□□□□ 0.28
CASC19-238	ENST00000641523	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.79	■□□□□ 0.28
CASC19-238	ENST00000641523	PPP4R3CP	Q6ZMV5	832 aa		16.52	■□□□□ 0.24
CASC19-238	ENST00000641523	EHMT2	Q96KQ7	1210 aa		16.35	■□□□□ 0.21
CASC19-238	ENST00000641523	NCBP3	Q53F19	620 aa	Known RBP	16.2	■□□□□ 0.18
CASC19-238	ENST00000641523	SLC4A1AP	Q9BWU0	796 aa	Known RBP	16.1	■□□□□ 0.17
CASC19-238	ENST00000641523	NPM3	O75607	178 aa	Known RBP	16.02	■□□□□ 0.16
CASC19-238	ENST00000641523	MSH5	O43196	834 aa		15.99	■□□□□ 0.15
CASC19-238	ENST00000641523	SCAF1	Q9H7N4	1312 aa	Known RBP	15.91	■□□□□ 0.14
CASC19-238	ENST00000641523	CNKSR2	Q8WXI2	1034 aa		15.89	■□□□□ 0.13
CASC19-238	ENST00000641523	POTED	Q86YR6	584 aa		15.88	■□□□□ 0.13
CASC19-238	ENST00000641523	CSRNP3	Q8WYN3	585 aa		15.87	■□□□□ 0.13
CASC19-238	ENST00000641523	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.75	■□□□□ 0.11
CASC19-238	ENST00000641523	ZBTB22	O15209	634 aa		15.51	■□□□□ 0.07
CASC19-238	ENST00000641523	RNF216	Q9NWF9	866 aa	Predicted RBP	15.43	■□□□□ 0.06
CASC19-238	ENST00000641523	DNAJC5B	Q9UF47	199 aa		15.36	■□□□□ 0.05
CASC19-238	ENST00000641523	DMRT2	Q9Y5R5	561 aa		15.32	■□□□□ 0.04
CASC19-238	ENST00000641523	FOXD4L1	Q9NU39	408 aa		15.27	■□□□□ 0.03
CASC19-238	ENST00000641523	HOXD11	P31277	338 aa	Predicted RBP	15.22	■□□□□ 0.03
CASC19-238	ENST00000641523	SLC4A2	P04920	1241 aa		15.01	□□□□□ -0.01
CASC19-238	ENST00000641523	NISCH	Q9Y2I1	1504 aa		14.96	□□□□□ -0.01
CASC19-238	ENST00000641523	MYCN	P04198	464 aa	Predicted RBP	14.75	□□□□□ -0.05
CASC19-238	ENST00000641523	DCAF8L1	A6NGE4	600 aa		14.68	□□□□□ -0.06
CASC19-238	ENST00000641523	ATXN8OS	P0DMR3	200 aa		14.64	□□□□□ -0.07
CASC19-238	ENST00000641523	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.54	□□□□□ -0.08
CASC19-238	ENST00000641523	ATF5	Q9Y2D1	282 aa	Predicted RBP	14.41	□□□□□ -0.1
CASC19-238	ENST00000641523		U3KPZ7	1027 aa	Predicted RBP	14.37	□□□□□ -0.11
CASC19-238	ENST00000641523	FKBP8	Q14318	412 aa		14.31	□□□□□ -0.12
CASC19-238	ENST00000641523	SAMD1	Q6SPF0	538 aa	Predicted RBP	14.3	□□□□□ -0.12
CASC19-238	ENST00000641523	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.3	□□□□□ -0.12
CASC19-238	ENST00000641523	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.3	□□□□□ -0.12
CASC19-238	ENST00000641523	RTN4	Q9NQC3	1192 aa	Known RBP	14.07	□□□□□ -0.16
CASC19-238	ENST00000641523	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.05	□□□□□ -0.16
CASC19-238	ENST00000641523	APLP2	Q06481	763 aa		14	□□□□□ -0.17
CASC19-238	ENST00000641523	AMER1	Q5JTC6	1135 aa	Predicted RBP	14	□□□□□ -0.17
CASC19-238	ENST00000641523	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.83	□□□□□ -0.19
CASC19-238	ENST00000641523	TRH	P20396	242 aa	Predicted RBP	13.82	□□□□□ -0.2
CASC19-238	ENST00000641523	RNF39	Q9H2S5	420 aa		13.79	□□□□□ -0.2
CASC19-238	ENST00000641523	MKRN4P	Q13434	485 aa	Predicted RBP	13.79	□□□□□ -0.2
CASC19-238	ENST00000641523	SPDYE4	A6NLX3	237 aa		13.72	□□□□□ -0.21
CASC19-238	ENST00000641523	CAPN15	O75808	1086 aa		13.72	□□□□□ -0.21
CASC19-238	ENST00000641523	POLA2	Q14181	598 aa		13.71	□□□□□ -0.21
CASC19-238	ENST00000641523	FBLN2	P98095	1184 aa		13.67	□□□□□ -0.22
CASC19-238	ENST00000641523	C1QBP	Q07021	282 aa	Known RBP	13.63	□□□□□ -0.23
CASC19-238	ENST00000641523	SLC24A1	O60721	1099 aa		13.62	□□□□□ -0.23
CASC19-238	ENST00000641523	FBXO3	Q9UK99	471 aa		13.58	□□□□□ -0.24
CASC19-238	ENST00000641523	ABCB7	O75027	752 aa		13.55	□□□□□ -0.24
CASC19-238	ENST00000641523	PROM2	Q8N271	834 aa		13.55	□□□□□ -0.24
CASC19-238	ENST00000641523	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.44	□□□□□ -0.26
CASC19-238	ENST00000641523	VASP	P50552	380 aa	Predicted RBP	13.41	□□□□□ -0.26
CASC19-238	ENST00000641523	CCDC180	Q9P1Z9	1646 aa		13.4	□□□□□ -0.26
CASC19-238	ENST00000641523	DSG3	P32926	999 aa		13.35	□□□□□ -0.27
CASC19-238	ENST00000641523	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.31	□□□□□ -0.28
CASC19-238	ENST00000641523	ABCC9	O60706	1549 aa		13.26	□□□□□ -0.29
CASC19-238	ENST00000641523	ZNF692	Q9BU19	519 aa	Predicted RBP	13.24	□□□□□ -0.29
CASC19-238	ENST00000641523	OSCAR	Q8IYS5	282 aa		13.22	□□□□□ -0.29
CASC19-238	ENST00000641523	SPDYE2B	A6NHP3	402 aa		13.15	□□□□□ -0.3
CASC19-238	ENST00000641523	SPDYE6	P0CI01	402 aa		13.15	□□□□□ -0.3
CASC19-238	ENST00000641523	SPDYE2	Q495Y8	402 aa		13.15	□□□□□ -0.3
CASC19-238	ENST00000641523	SSUH2	Q9Y2M2	353 aa		13.13	□□□□□ -0.31
CASC19-238	ENST00000641523	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
CASC19-238	ENST00000641523	PKD2	Q13563	968 aa		13.08	□□□□□ -0.32
CASC19-238	ENST00000641523	KLHL34	Q8N239	644 aa		13.07	□□□□□ -0.32
CASC19-238	ENST00000641523	STAG3	Q9UJ98	1225 aa		13.07	□□□□□ -0.32
CASC19-238	ENST00000641523	DCAF8L2	P0C7V8	631 aa		13.06	□□□□□ -0.32
CASC19-238	ENST00000641523	CACNB1	Q02641	598 aa	Predicted RBP	13.04	□□□□□ -0.32
CASC19-238	ENST00000641523	SPOCK2	Q92563	424 aa		13.02	□□□□□ -0.33
CASC19-238	ENST00000641523	PLCD3	Q8N3E9	789 aa		13	□□□□□ -0.33
CASC19-238	ENST00000641523	MIER1	Q8N108	512 aa		12.97	□□□□□ -0.33
CASC19-238	ENST00000641523	PLCB2	Q00722	1185 aa		12.96	□□□□□ -0.33
CASC19-238	ENST00000641523	ECM2	O94769	699 aa	Predicted RBP	12.9	□□□□□ -0.35
CASC19-238	ENST00000641523	HAP1	P54257	671 aa	Predicted RBP	12.81	□□□□□ -0.36
CASC19-238	ENST00000641523	PLEKHG5	O94827	1062 aa		12.78	□□□□□ -0.36
CASC19-238	ENST00000641523	RGL2	O15211	777 aa		12.77	□□□□□ -0.37
CASC19-238	ENST00000641523	NPM1	P06748	294 aa	Known RBP eCLIP	12.76	□□□□□ -0.37
CASC19-238	ENST00000641523	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.76	□□□□□ -0.37
CASC19-238	ENST00000641523	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.74	□□□□□ -0.37
CASC19-238	ENST00000641523	RB1CC1	Q8TDY2	1594 aa		12.73	□□□□□ -0.37
CASC19-238	ENST00000641523	BBX	Q8WY36	941 aa	Predicted RBP	12.7	□□□□□ -0.38
CASC19-238	ENST00000641523	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.68	□□□□□ -0.38
CASC19-238	ENST00000641523	NACAD	O15069	1562 aa		12.67	□□□□□ -0.38
CASC19-238	ENST00000641523	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.64	□□□□□ -0.39
CASC19-238	ENST00000641523	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.64	□□□□□ -0.39
CASC19-238	ENST00000641523	AKT1S1	Q96B36	256 aa		12.64	□□□□□ -0.39
CASC19-238	ENST00000641523	RBM42	Q9BTD8	480 aa	Known RBP	12.64	□□□□□ -0.39
CASC19-238	ENST00000641523	CFAP44	Q96MT7	982 aa		12.61	□□□□□ -0.39
CASC19-238	ENST00000641523	CLEC11A	Q9Y240	323 aa		12.61	□□□□□ -0.39
CASC19-238	ENST00000641523	VSIG10	Q8N0Z9	540 aa		12.58	□□□□□ -0.4
CASC19-238	ENST00000641523	CHGA	P10645	457 aa	Known RBP	12.57	□□□□□ -0.4
CASC19-238	ENST00000641523	MYO15B	Q96JP2	1530 aa		12.57	□□□□□ -0.4
CASC19-238	ENST00000641523	NUBP1	P53384	320 aa		12.56	□□□□□ -0.4
CASC19-238	ENST00000641523	TRIM41	Q8WV44	630 aa		12.56	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms