Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 ZNF251-202ENST00000524394 315 ntTSL 517.04■□□□□ 0.327e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.37e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-203ENST00000428632 2296 ntTSL 216.89■□□□□ 0.297e-6■■■□□ 16.5
DDX42Q86XP3 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.197e-6■■■□□ 16.5
DDX42Q86XP3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.187e-6■■■□□ 16.5
DDX42Q86XP3 ZNF251-203ENST00000525191 618 ntTSL 315.84■□□□□ 0.137e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.74■□□□□ 0.117e-6■■■□□ 16.5
DDX42Q86XP3 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.17e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-212ENST00000498540 748 ntTSL 315.64■□□□□ 0.093e-8■■■□□ 16.5
DDX42Q86XP3 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.01□□□□□ -0.017e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-218ENST00000551127 2975 ntTSL 214.79□□□□□ -0.047e-6■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC14.55□□□□□ -0.087e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-210ENST00000475329 544 ntTSL 314.23□□□□□ -0.133e-8■■■□□ 16.5
DDX42Q86XP3 SNHG1-216ENST00000541416 996 ntTSL 213.12□□□□□ -0.317e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC13.04□□□□□ -0.323e-8■■■□□ 16.5
DDX42Q86XP3 CIAO1-201ENST00000272402 3588 ntTSL 212.95□□□□□ -0.347e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-204ENST00000541517 5173 ntTSL 5 BASIC12.48□□□□□ -0.417e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-221ENST00000544983 870 ntTSL 212.33□□□□□ -0.447e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC11.98□□□□□ -0.497e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-202ENST00000392569 2558 ntTSL 2 BASIC11.87□□□□□ -0.517e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-210ENST00000547955 609 ntTSL 511.59□□□□□ -0.557e-6■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-205ENST00000479001 944 ntTSL 511.1□□□□□ -0.637e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-209ENST00000538654 2768 ntTSL 29.8□□□□□ -0.847e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-215ENST00000540904 594 ntTSL 59.7□□□□□ -0.867e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC8.16□□□□□ -1.17e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC8.11□□□□□ -1.117e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.79□□□□□ -1.327e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.67□□□□□ -1.347e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-224ENST00000545688 610 ntTSL 36.44□□□□□ -1.387e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-207ENST00000537965 578 ntTSL 55.68□□□□□ -1.57e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-222ENST00000545308 646 ntTSL 25.65□□□□□ -1.57e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.62□□□□□ -1.517e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.59□□□□□ -1.517e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.58□□□□□ -1.527e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-203ENST00000537024 532 ntTSL 55.25□□□□□ -1.577e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-214ENST00000540865 784 ntTSL 54.9□□□□□ -1.637e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.66□□□□□ -1.667e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.46□□□□□ -1.77e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.42□□□□□ -1.77e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-220ENST00000544550 636 ntTSL 24.37□□□□□ -1.717e-6■■■□□ 16.5
DDX42Q86XP3 SNHG1-202ENST00000535689 550 ntTSL 24.36□□□□□ -1.717e-6■■■□□ 16.5
DDX42Q86XP3 PSMB4-206ENST00000495288 986 ntTSL 218.05■□□□□ 0.485e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-205ENST00000493673 1650 ntTSL 516.75■□□□□ 0.275e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-207ENST00000495805 811 ntTSL 214.23□□□□□ -0.135e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.25e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-204ENST00000476467 2067 ntTSL 213.71□□□□□ -0.215e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-203ENST00000474100 755 ntTSL 57.63□□□□□ -1.195e-6■■■□□ 16.3
DDX42Q86XP3 PSMB4-202ENST00000466425 665 ntTSL 26.94□□□□□ -1.35e-6■■■□□ 16.3
DDX42Q86XP3 BRD4-208ENST00000597315 892 ntTSL 528.45■■■□□ 2.143e-6■■■□□ 16.1
DDX42Q86XP3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.56■■□□□ 1.843e-6■■■□□ 16.1
DDX42Q86XP3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.573e-6■■■□□ 16.1
DDX42Q86XP3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.543e-6■■■□□ 16.1
DDX42Q86XP3 ZBTB7B-206ENST00000487542 873 ntTSL 223.66■■□□□ 1.383e-6■■■□□ 16.1
DDX42Q86XP3 ST20-MTHFS-202ENST00000494999 632 ntTSL 323.36■■□□□ 1.333e-6■■■□□ 16.1
DDX42Q86XP3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.053e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.92■□□□□ 0.943e-11■■■□□ 16.1
DDX42Q86XP3 PHGDH-210ENST00000641115 1638 ntBASIC20.48■□□□□ 0.873e-6■■■□□ 16.1
DDX42Q86XP3 SYVN1-212ENST00000530451 656 ntTSL 520.34■□□□□ 0.853e-6■■■□□ 16.1
DDX42Q86XP3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.813e-6■■■□□ 16.1
DDX42Q86XP3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.763e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.753e-11■■■□□ 16.1
DDX42Q86XP3 PHGDH-204ENST00000469443 653 ntTSL 219.32■□□□□ 0.683e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-226ENST00000641756 2132 nt19.15■□□□□ 0.663e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-209ENST00000641074 1780 ntBASIC19.04■□□□□ 0.643e-6■■■□□ 16.1
DDX42Q86XP3 LRCH4-205ENST00000485554 774 ntTSL 318.91■□□□□ 0.625e-6■■■□□ 16.1
DDX42Q86XP3 LRRC41-205ENST00000498402 2068 ntTSL 218.86■□□□□ 0.613e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.43■□□□□ 0.543e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-211ENST00000641213 2053 nt18.36■□□□□ 0.533e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-232ENST00000641947 1774 nt18.35■□□□□ 0.533e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.3■□□□□ 0.523e-11■■■□□ 16.1
DDX42Q86XP3 PHGDH-229ENST00000641891 2175 nt18.29■□□□□ 0.523e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.2■□□□□ 0.53e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-227ENST00000641811 1031 nt18.19■□□□□ 0.53e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-214ENST00000641314 1558 nt18.1■□□□□ 0.493e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.1■□□□□ 0.493e-11■■■□□ 16.1
DDX42Q86XP3 PHGDH-230ENST00000641927 1678 nt18.09■□□□□ 0.493e-6■■■□□ 16.1
DDX42Q86XP3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.71■□□□□ 0.435e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-213ENST00000641272 758 nt17.71■□□□□ 0.433e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.53■□□□□ 0.43e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.31■□□□□ 0.363e-11■■■□□ 16.1
DDX42Q86XP3 PHGDH-216ENST00000641375 2196 nt17.24■□□□□ 0.353e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.05■□□□□ 0.323e-11■■■□□ 16.1
DDX42Q86XP3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.313e-6■■■□□ 16.1
DDX42Q86XP3 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.193e-6■■■□□ 16.1
DDX42Q86XP3 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.163e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-222ENST00000546253 582 ntTSL 415.99■□□□□ 0.153e-11■■■□□ 16.1
DDX42Q86XP3 SLC3A2-212ENST00000538682 1368 ntTSL 1 (best)15.87■□□□□ 0.133e-11■■■□□ 16.1
DDX42Q86XP3 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.093e-6■■■□□ 16.1
DDX42Q86XP3 BRD4-205ENST00000594841 1821 ntAPPRIS ALT2 TSL 1 (best)15.54■□□□□ 0.083e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-233ENST00000642021 2794 nt15.15■□□□□ 0.023e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-220ENST00000542922 2174 ntTSL 214.81□□□□□ -0.043e-11■■■□□ 16.1
DDX42Q86XP3 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.113e-6■■■□□ 16.1
DDX42Q86XP3 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC14.34□□□□□ -0.113e-6■■■□□ 16.1
DDX42Q86XP3 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.153e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.163e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.183e-6■■■□□ 16.1
DDX42Q86XP3 SYVN1-209ENST00000527765 516 ntTSL 313.72□□□□□ -0.213e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-201ENST00000369407 3180 ntTSL 213.61□□□□□ -0.233e-6■■■□□ 16.1
DDX42Q86XP3 BRD4-210ENST00000601941 604 ntTSL 512.88□□□□□ -0.353e-6■■■□□ 16.1
DDX42Q86XP3 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.383e-6■■■□□ 16.1
Retrieved 100 of 2,477 protein–RNA pairs in 193 ms