RNA–Protein interactions for RNA: ENST00000641375.1

PHGDH-216, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,196 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-216ENST00000641375 NISCHQ9Y2I1 1504 aa36.84■■■■□ 3.49
PHGDH-216ENST00000641375 CCDC180Q9P1Z9 1646 aa32.09■■■□□ 2.73
PHGDH-216ENST00000641375 ZCCHC6Q5VYS8 1495 aaKnown RBP30.98■■■□□ 2.55
PHGDH-216ENST00000641375 DCAF1Q9Y4B6 1507 aa30.49■■■□□ 2.47
PHGDH-216ENST00000641375 DCAF8L2P0C7V8 631 aa30.35■■■□□ 2.45
PHGDH-216ENST00000641375 ABCC9O60706 1549 aa30.13■■■□□ 2.41
PHGDH-216ENST00000641375 SHROOM4Q9ULL8 1493 aa30.11■■■□□ 2.41
PHGDH-216ENST00000641375 MYO15BQ96JP2 1530 aa30.08■■■□□ 2.41
PHGDH-216ENST00000641375 NACADO15069 1562 aa29.84■■■□□ 2.37
PHGDH-216ENST00000641375 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
PHGDH-216ENST00000641375 SCRIBQ14160 1630 aa29.48■■■□□ 2.31
PHGDH-216ENST00000641375 SUPT5HO00267 1087 aaKnown RBP29.08■■■□□ 2.25
PHGDH-216ENST00000641375 UNC13AQ9UPW8 1703 aa28.96■■■□□ 2.23
PHGDH-216ENST00000641375 RSF1Q96T23 1441 aaPredicted RBP28.62■■■□□ 2.17
PHGDH-216ENST00000641375 BICRAQ9NZM4 1560 aa28.61■■■□□ 2.17
PHGDH-216ENST00000641375 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
PHGDH-216ENST00000641375 BAZ1AQ9NRL2 1556 aaPredicted RBP28.46■■■□□ 2.15
PHGDH-216ENST00000641375 MROH2BQ7Z745 1585 aa28.44■■■□□ 2.14
PHGDH-216ENST00000641375 PABPN1Q86U42 306 aaKnown RBP eCLIP28.43■■■□□ 2.14
PHGDH-216ENST00000641375 SMARCA4P51532 1647 aa28.3■■■□□ 2.12
PHGDH-216ENST00000641375 WIZO95785 1651 aa28.24■■■□□ 2.11
PHGDH-216ENST00000641375 TOP2AP11388 1531 aaKnown RBP27.96■■■□□ 2.07
PHGDH-216ENST00000641375 PEG3Q9GZU2 1588 aa27.96■■■□□ 2.07
PHGDH-216ENST00000641375 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
PHGDH-216ENST00000641375 SMARCA2P51531 1590 aa27.8■■■□□ 2.04
PHGDH-216ENST00000641375 ATAD2BQ9ULI0 1458 aa27.77■■■□□ 2.04
PHGDH-216ENST00000641375 EIF4G1Q04637 1599 aaKnown RBP27.75■■■□□ 2.03
PHGDH-216ENST00000641375 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
PHGDH-216ENST00000641375 BAZ1BQ9UIG0 1483 aaKnown RBP27.64■■■□□ 2.02
PHGDH-216ENST00000641375 NCAPD3P42695 1498 aa27.52■■■□□ 2
PHGDH-216ENST00000641375 HMGXB3Q12766 1538 aa27.51■■■□□ 2
PHGDH-216ENST00000641375 TRIM41Q8WV44 630 aa27.37■■□□□ 1.97
PHGDH-216ENST00000641375 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
PHGDH-216ENST00000641375 ABCC8Q09428 1581 aa27.13■■□□□ 1.93
PHGDH-216ENST00000641375 WRNQ14191 1432 aaPredicted RBP eCLIP26.96■■□□□ 1.91
PHGDH-216ENST00000641375 CFTRP13569 1480 aa26.95■■□□□ 1.91
PHGDH-216ENST00000641375 PRDM2Q13029 1718 aa26.89■■□□□ 1.89
PHGDH-216ENST00000641375 LOC105371045A0A1W2PR82 267 aa26.84■■□□□ 1.89
PHGDH-216ENST00000641375 SYNJ1O43426 1573 aa26.82■■□□□ 1.88
PHGDH-216ENST00000641375 CADPSQ9ULU8 1353 aa26.82■■□□□ 1.88
PHGDH-216ENST00000641375 FAM9AQ8IZU1 332 aaPredicted RBP26.82■■□□□ 1.88
PHGDH-216ENST00000641375 TOP2BQ02880 1626 aa26.74■■□□□ 1.87
PHGDH-216ENST00000641375 BIVM-ERCC5R4GMW8 1640 aa26.71■■□□□ 1.87
PHGDH-216ENST00000641375 EEA1Q15075 1411 aa26.7■■□□□ 1.86
PHGDH-216ENST00000641375 SOGA1O94964 1423 aa26.64■■□□□ 1.86
PHGDH-216ENST00000641375 CUX1P39880 1505 aa26.59■■□□□ 1.85
PHGDH-216ENST00000641375 LAMC3Q9Y6N6 1575 aa26.58■■□□□ 1.85
PHGDH-216ENST00000641375 FANCD2Q9BXW9 1451 aa26.53■■□□□ 1.84
PHGDH-216ENST00000641375 RUSC2Q8N2Y8 1516 aa26.51■■□□□ 1.84
PHGDH-216ENST00000641375 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
PHGDH-216ENST00000641375 NESP48681 1621 aa26.49■■□□□ 1.83
PHGDH-216ENST00000641375 DNAJC5BQ9UF47 199 aa26.46■■□□□ 1.83
PHGDH-216ENST00000641375 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
PHGDH-216ENST00000641375 PDS5BQ9NTI5 1447 aa26.37■■□□□ 1.81
PHGDH-216ENST00000641375 CEP164Q9UPV0 1460 aa26.35■■□□□ 1.81
PHGDH-216ENST00000641375 DNMBPQ6XZF7 1577 aa26.33■■□□□ 1.81
PHGDH-216ENST00000641375 KIF21BO75037 1637 aa26.33■■□□□ 1.81
PHGDH-216ENST00000641375 GOLGA3Q08378 1498 aa26.31■■□□□ 1.8
PHGDH-216ENST00000641375 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
PHGDH-216ENST00000641375 KIF27Q86VH2 1401 aa26.28■■□□□ 1.8
PHGDH-216ENST00000641375 TNIKQ9UKE5 1360 aa26.25■■□□□ 1.79
PHGDH-216ENST00000641375 TOPBP1Q92547 1522 aa26.25■■□□□ 1.79
PHGDH-216ENST00000641375 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
PHGDH-216ENST00000641375 UBTFP17480 764 aaKnown RBP26.18■■□□□ 1.78
PHGDH-216ENST00000641375 URB2Q14146 1524 aaKnown RBP26.16■■□□□ 1.78
PHGDH-216ENST00000641375 CUX2O14529 1486 aa26.14■■□□□ 1.78
PHGDH-216ENST00000641375 POLA1P09884 1462 aaPredicted RBP26.14■■□□□ 1.77
PHGDH-216ENST00000641375 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
PHGDH-216ENST00000641375 PRXQ9BXM0 1461 aa26.12■■□□□ 1.77
PHGDH-216ENST00000641375 CEP162Q5TB80 1403 aa26.11■■□□□ 1.77
PHGDH-216ENST00000641375 RAPGEF2Q9Y4G8 1499 aa26.11■■□□□ 1.77
PHGDH-216ENST00000641375 ABCA10Q8WWZ4 1543 aa26.07■■□□□ 1.76
PHGDH-216ENST00000641375 RAD54L2Q9Y4B4 1467 aa26.03■■□□□ 1.76
PHGDH-216ENST00000641375 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
PHGDH-216ENST00000641375 IGF1RP08069 1367 aa25.99■■□□□ 1.75
PHGDH-216ENST00000641375 WDR97A6NE52 1622 aa25.98■■□□□ 1.75
PHGDH-216ENST00000641375 CLIP1P30622 1438 aa25.88■■□□□ 1.73
PHGDH-216ENST00000641375 CARMIL1Q5VZK9 1371 aa25.88■■□□□ 1.73
PHGDH-216ENST00000641375 TARBP1Q13395 1621 aaKnown RBP25.86■■□□□ 1.73
PHGDH-216ENST00000641375 WDR62O43379 1518 aa25.86■■□□□ 1.73
PHGDH-216ENST00000641375 ERCC6Q03468 1493 aa25.86■■□□□ 1.73
PHGDH-216ENST00000641375 ABCA5Q8WWZ7 1642 aa25.85■■□□□ 1.73
PHGDH-216ENST00000641375 CUL7Q14999 1698 aa25.84■■□□□ 1.73
PHGDH-216ENST00000641375 TRIM26Q12899 539 aaPredicted RBP25.82■■□□□ 1.72
PHGDH-216ENST00000641375 PCGF6Q9BYE7 350 aa25.81■■□□□ 1.72
PHGDH-216ENST00000641375 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
PHGDH-216ENST00000641375 TDRD9Q8NDG6 1382 aaKnown RBP25.77■■□□□ 1.72
PHGDH-216ENST00000641375 THOC2Q8NI27 1593 aaKnown RBP25.73■■□□□ 1.71
PHGDH-216ENST00000641375 IFT140Q96RY7 1462 aa25.71■■□□□ 1.71
PHGDH-216ENST00000641375 VPS8Q8N3P4 1428 aa25.68■■□□□ 1.7
PHGDH-216ENST00000641375 RANGAP1P46060 587 aaPredicted RBP25.66■■□□□ 1.7
PHGDH-216ENST00000641375 PBRM1Q86U86 1689 aa25.65■■□□□ 1.7
PHGDH-216ENST00000641375 ARAP1Q96P48 1450 aa25.58■■□□□ 1.69
PHGDH-216ENST00000641375 AQRO60306 1485 aaKnown RBP eCLIP25.58■■□□□ 1.691e-6■■□□□ 14.4
PHGDH-216ENST00000641375 CTTNBP2Q8WZ74 1663 aa25.58■■□□□ 1.69
PHGDH-216ENST00000641375 GRIN2BQ13224 1484 aa25.56■■□□□ 1.68
PHGDH-216ENST00000641375 ARHGAP35Q9NRY4 1499 aa25.56■■□□□ 1.68
PHGDH-216ENST00000641375 PPARGC1BQ86YN6 1023 aaKnown RBP25.55■■□□□ 1.68
PHGDH-216ENST00000641375 ZNF608Q9ULD9 1512 aaPredicted RBP25.52■■□□□ 1.68
PHGDH-216ENST00000641375 FHAD1B1AJZ9 1412 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms