RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
SNHG1-220ENST00000544550 CHIC1Q5VXU3 224 aa14.46□□□□□ -0.09
SNHG1-220ENST00000544550 SENP3Q9H4L4 574 aaPredicted RBP13.29□□□□□ -0.28
SNHG1-220ENST00000544550 PHF23Q9BUL5 403 aaPredicted RBP12.93□□□□□ -0.34
SNHG1-220ENST00000544550 POTEDQ86YR6 584 aa12.36□□□□□ -0.43
SNHG1-220ENST00000544550 FOXD1Q16676 465 aa12.29□□□□□ -0.44
SNHG1-220ENST00000544550 MSH5O43196 834 aa11.91□□□□□ -0.5
SNHG1-220ENST00000544550 PIAS4Q8N2W9 510 aaPredicted RBP11.43□□□□□ -0.58
SNHG1-220ENST00000544550 PLPPR3Q6T4P5 718 aa11.08□□□□□ -0.64
SNHG1-220ENST00000544550 PPP6R1Q9UPN7 881 aa11□□□□□ -0.65
SNHG1-220ENST00000544550 ADRA2BP18089 450 aa10.97□□□□□ -0.65
SNHG1-220ENST00000544550 NISCHQ9Y2I1 1504 aa10.48□□□□□ -0.73
SNHG1-220ENST00000544550 CACNB1Q02641 598 aaPredicted RBP10.46□□□□□ -0.73
SNHG1-220ENST00000544550 DMRT2Q9Y5R5 561 aa10.41□□□□□ -0.74
SNHG1-220ENST00000544550 SCAF1Q9H7N4 1312 aaKnown RBP10.32□□□□□ -0.76
SNHG1-220ENST00000544550 MAPK8IP2Q13387 824 aaPredicted RBP10.19□□□□□ -0.78
SNHG1-220ENST00000544550 RNF39Q9H2S5 420 aa10.01□□□□□ -0.81
SNHG1-220ENST00000544550 DCAF8L1A6NGE4 600 aa9.97□□□□□ -0.81
SNHG1-220ENST00000544550 C1QBPQ07021 282 aaKnown RBP9.93□□□□□ -0.82
SNHG1-220ENST00000544550 ABCC9O60706 1549 aa9.84□□□□□ -0.83
SNHG1-220ENST00000544550 HOXD11P31277 338 aaPredicted RBP9.81□□□□□ -0.84
SNHG1-220ENST00000544550 DNAJC5BQ9UF47 199 aa9.73□□□□□ -0.85
SNHG1-220ENST00000544550 KCNA4P22459 653 aa9.63□□□□□ -0.87
SNHG1-220ENST00000544550 POTEHQ6S545 545 aa9.63□□□□□ -0.87
SNHG1-220ENST00000544550 RNF216Q9NWF9 866 aaPredicted RBP9.63□□□□□ -0.87
SNHG1-220ENST00000544550 PPP4R3CPQ6ZMV5 832 aa9.59□□□□□ -0.87
SNHG1-220ENST00000544550 CNKSR2Q8WXI2 1034 aa9.58□□□□□ -0.88
SNHG1-220ENST00000544550 CCDC180Q9P1Z9 1646 aa9.54□□□□□ -0.88
SNHG1-220ENST00000544550 NCBP3Q53F19 620 aaKnown RBP9.39□□□□□ -0.91
SNHG1-220ENST00000544550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.38□□□□□ -0.91
SNHG1-220ENST00000544550 NPM3O75607 178 aaKnown RBP9.27□□□□□ -0.93
SNHG1-220ENST00000544550 RB1CC1Q8TDY2 1594 aa9.27□□□□□ -0.93
SNHG1-220ENST00000544550 SLC4A1APQ9BWU0 796 aaKnown RBP9.2□□□□□ -0.94
SNHG1-220ENST00000544550 EHMT2Q96KQ7 1210 aa9.19□□□□□ -0.94
SNHG1-220ENST00000544550 DSG3P32926 999 aa9.17□□□□□ -0.94
SNHG1-220ENST00000544550 NACADO15069 1562 aa9.14□□□□□ -0.95
SNHG1-220ENST00000544550 CAPN15O75808 1086 aa9.12□□□□□ -0.95
SNHG1-220ENST00000544550 PABPN1Q86U42 306 aaKnown RBP eCLIP9.11□□□□□ -0.95
SNHG1-220ENST00000544550 CSRNP3Q8WYN3 585 aa9.03□□□□□ -0.96
SNHG1-220ENST00000544550 DNAJC5Q9H3Z4 198 aa9.02□□□□□ -0.97
SNHG1-220ENST00000544550 U3KPZ7 1027 aaPredicted RBP9.02□□□□□ -0.97
SNHG1-220ENST00000544550 APLP2Q06481 763 aa9.01□□□□□ -0.97
SNHG1-220ENST00000544550 SPINK5Q9NQ38 1064 aaPredicted RBP9□□□□□ -0.97
SNHG1-220ENST00000544550 DCAF8L2P0C7V8 631 aa8.99□□□□□ -0.97
SNHG1-220ENST00000544550 BICRAQ9NZM4 1560 aa8.95□□□□□ -0.98
SNHG1-220ENST00000544550 CECR2Q9BXF3 1484 aa8.94□□□□□ -0.98
SNHG1-220ENST00000544550 RBM42Q9BTD8 480 aaKnown RBP8.93□□□□□ -0.98
SNHG1-220ENST00000544550 MYO15BQ96JP2 1530 aa8.93□□□□□ -0.98
SNHG1-220ENST00000544550 SHROOM4Q9ULL8 1493 aa8.92□□□□□ -0.98
SNHG1-220ENST00000544550 ZNF219Q9P2Y4 722 aaPredicted RBP8.91□□□□□ -0.98
SNHG1-220ENST00000544550 UNC13AQ9UPW8 1703 aa8.91□□□□□ -0.98
SNHG1-220ENST00000544550 ZBTB22O15209 634 aa8.88□□□□□ -0.99
SNHG1-220ENST00000544550 CC2D2AQ9P2K1 1620 aa8.87□□□□□ -0.99
SNHG1-220ENST00000544550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.83□□□□□ -1
SNHG1-220ENST00000544550 HNRNPUL2Q1KMD3 747 aaKnown RBP8.83□□□□□ -1
SNHG1-220ENST00000544550 TRHP20396 242 aaPredicted RBP8.82□□□□□ -1
SNHG1-220ENST00000544550 CHRDL2Q6WN34 429 aa8.82□□□□□ -1
SNHG1-220ENST00000544550 SP7Q8TDD2 431 aaPredicted RBP8.8□□□□□ -1
SNHG1-220ENST00000544550 FOXD4L1Q9NU39 408 aa8.8□□□□□ -1
SNHG1-220ENST00000544550 EIF4G1Q04637 1599 aaKnown RBP8.79□□□□□ -1
SNHG1-220ENST00000544550 ABCB7O75027 752 aa8.77□□□□□ -1.01
SNHG1-220ENST00000544550 SLC4A2P04920 1241 aa8.71□□□□□ -1.02
SNHG1-220ENST00000544550 SAMD1Q6SPF0 538 aaPredicted RBP8.69□□□□□ -1.02
SNHG1-220ENST00000544550 CUX2O14529 1486 aa8.69□□□□□ -1.02
SNHG1-220ENST00000544550 DCAF1Q9Y4B6 1507 aa8.68□□□□□ -1.02
SNHG1-220ENST00000544550 SCRIBQ14160 1630 aa8.65□□□□□ -1.03
SNHG1-220ENST00000544550 ZCCHC6Q5VYS8 1495 aaKnown RBP8.63□□□□□ -1.03
SNHG1-220ENST00000544550 ERCC6Q03468 1493 aa8.57□□□□□ -1.04
SNHG1-220ENST00000544550 MYCNP04198 464 aaPredicted RBP8.55□□□□□ -1.04
SNHG1-220ENST00000544550 AKT1S1Q96B36 256 aa8.55□□□□□ -1.04
SNHG1-220ENST00000544550 HAX1O00165 279 aa8.49□□□□□ -1.05
SNHG1-220ENST00000544550 ATXN8OSP0DMR3 200 aa8.49□□□□□ -1.05
SNHG1-220ENST00000544550 POLA2Q14181 598 aa8.47□□□□□ -1.05
SNHG1-220ENST00000544550 TRIM41Q8WV44 630 aa8.47□□□□□ -1.05
SNHG1-220ENST00000544550 PIP4P2Q8N4L2 257 aa8.45□□□□□ -1.06
SNHG1-220ENST00000544550 ZBTB12Q9Y330 459 aaPredicted RBP8.45□□□□□ -1.06
SNHG1-220ENST00000544550 NCAPD3P42695 1498 aa8.45□□□□□ -1.06
SNHG1-220ENST00000544550 REM2Q8IYK8 340 aaPredicted RBP8.39□□□□□ -1.07
SNHG1-220ENST00000544550 ATAD2BQ9ULI0 1458 aa8.35□□□□□ -1.07
SNHG1-220ENST00000544550 FXR2P51116 673 aaKnown RBP eCLIP8.35□□□□□ -1.07
SNHG1-220ENST00000544550 HMGXB3Q12766 1538 aa8.34□□□□□ -1.07
SNHG1-220ENST00000544550 NESP48681 1621 aa8.34□□□□□ -1.07
SNHG1-220ENST00000544550 THOC2Q8NI27 1593 aaKnown RBP8.34□□□□□ -1.07
SNHG1-220ENST00000544550 SMARCA2P51531 1590 aa8.33□□□□□ -1.08
SNHG1-220ENST00000544550 ATF5Q9Y2D1 282 aaPredicted RBP8.32□□□□□ -1.08
SNHG1-220ENST00000544550 PDS5BQ9NTI5 1447 aa8.29□□□□□ -1.08
SNHG1-220ENST00000544550 LAMC3Q9Y6N6 1575 aa8.29□□□□□ -1.08
SNHG1-220ENST00000544550 PITPNM1O00562 1244 aa8.27□□□□□ -1.09
SNHG1-220ENST00000544550 BAZ1BQ9UIG0 1483 aaKnown RBP8.26□□□□□ -1.09
SNHG1-220ENST00000544550 SMARCA4P51532 1647 aa8.23□□□□□ -1.09
SNHG1-220ENST00000544550 LHX8Q68G74 356 aa8.23□□□□□ -1.09
SNHG1-220ENST00000544550 OSCARQ8IYS5 282 aa8.23□□□□□ -1.09
SNHG1-220ENST00000544550 MRC2Q9UBG0 1479 aa8.21□□□□□ -1.09
SNHG1-220ENST00000544550 BAZ1AQ9NRL2 1556 aaPredicted RBP8.2□□□□□ -1.1
SNHG1-220ENST00000544550 KIF21AQ7Z4S6 1674 aa8.19□□□□□ -1.1
SNHG1-220ENST00000544550 WDR62O43379 1518 aa8.19□□□□□ -1.1
SNHG1-220ENST00000544550 PEG3Q9GZU2 1588 aa8.18□□□□□ -1.1
SNHG1-220ENST00000544550 CADPSQ9ULU8 1353 aa8.17□□□□□ -1.1
SNHG1-220ENST00000544550 EVX2Q03828 476 aa8.16□□□□□ -1.1
SNHG1-220ENST00000544550 FKBP8Q14318 412 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms