RNA–Protein interactions for RNA: ENST00000469443.2

PHGDH-204, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-204ENST00000469443 NISCHQ9Y2I1 1504 aa45.07■■■■■ 4.81
PHGDH-204ENST00000469443 CCDC180Q9P1Z9 1646 aa40.31■■■■■ 4.04
PHGDH-204ENST00000469443 ABCC9O60706 1549 aa39.68■■■■□ 3.94
PHGDH-204ENST00000469443 RB1CC1Q8TDY2 1594 aa38.06■■■■□ 3.68
PHGDH-204ENST00000469443 NACADO15069 1562 aa37.93■■■■□ 3.66
PHGDH-204ENST00000469443 DCAF8L2P0C7V8 631 aa37.72■■■■□ 3.63
PHGDH-204ENST00000469443 MYO15BQ96JP2 1530 aa37.58■■■■□ 3.61
PHGDH-204ENST00000469443 ZCCHC6Q5VYS8 1495 aaKnown RBP37.48■■■■□ 3.59
PHGDH-204ENST00000469443 UNC13AQ9UPW8 1703 aa37.31■■■■□ 3.56
PHGDH-204ENST00000469443 DCAF1Q9Y4B6 1507 aa37.3■■■■□ 3.56
PHGDH-204ENST00000469443 PABPN1Q86U42 306 aaKnown RBP eCLIP36.97■■■■□ 3.51
PHGDH-204ENST00000469443 BICRAQ9NZM4 1560 aa36.93■■■■□ 3.5
PHGDH-204ENST00000469443 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
PHGDH-204ENST00000469443 DNAJC5BQ9UF47 199 aa36.7■■■■□ 3.47
PHGDH-204ENST00000469443 SHROOM4Q9ULL8 1493 aa36.5■■■■□ 3.43
PHGDH-204ENST00000469443 EIF4G1Q04637 1599 aaKnown RBP35.98■■■■□ 3.35
PHGDH-204ENST00000469443 CC2D2AQ9P2K1 1620 aa35.92■■■■□ 3.34
PHGDH-204ENST00000469443 CECR2Q9BXF3 1484 aa35.69■■■■□ 3.3
PHGDH-204ENST00000469443 SMARCA4P51532 1647 aa35.09■■■■□ 3.21
PHGDH-204ENST00000469443 BAZ1AQ9NRL2 1556 aaPredicted RBP34.98■■■■□ 3.19
PHGDH-204ENST00000469443 NCAPD3P42695 1498 aa34.96■■■■□ 3.19
PHGDH-204ENST00000469443 ATAD2BQ9ULI0 1458 aa34.93■■■■□ 3.18
PHGDH-204ENST00000469443 SMARCA2P51531 1590 aa34.91■■■■□ 3.18
PHGDH-204ENST00000469443 HMGXB3Q12766 1538 aa34.8■■■■□ 3.16
PHGDH-204ENST00000469443 PEG3Q9GZU2 1588 aa34.74■■■■□ 3.15
PHGDH-204ENST00000469443 MROH2BQ7Z745 1585 aa34.73■■■■□ 3.15
PHGDH-204ENST00000469443 BAZ1BQ9UIG0 1483 aaKnown RBP34.64■■■■□ 3.14
PHGDH-204ENST00000469443 WIZO95785 1651 aa34.38■■■■□ 3.09
PHGDH-204ENST00000469443 NESP48681 1621 aa34.24■■■■□ 3.07
PHGDH-204ENST00000469443 ERCC6Q03468 1493 aa34.23■■■■□ 3.07
PHGDH-204ENST00000469443 RSF1Q96T23 1441 aaPredicted RBP34.18■■■■□ 3.06
PHGDH-204ENST00000469443 LAMC3Q9Y6N6 1575 aa34.15■■■■□ 3.06
PHGDH-204ENST00000469443 CUX2O14529 1486 aa34.01■■■■□ 3.03
PHGDH-204ENST00000469443 TOP2AP11388 1531 aaKnown RBP33.97■■■■□ 3.03
PHGDH-204ENST00000469443 KIF21AQ7Z4S6 1674 aa33.92■■■■□ 3.02
PHGDH-204ENST00000469443 CADPSQ9ULU8 1353 aa33.91■■■■□ 3.02
PHGDH-204ENST00000469443 PDS5BQ9NTI5 1447 aa33.87■■■■□ 3.01
PHGDH-204ENST00000469443 THOC2Q8NI27 1593 aaKnown RBP33.85■■■■□ 3.01
PHGDH-204ENST00000469443 CFTRP13569 1480 aa33.65■■■□□ 2.98
PHGDH-204ENST00000469443 MRC2Q9UBG0 1479 aa33.56■■■□□ 2.96
PHGDH-204ENST00000469443 CEP164Q9UPV0 1460 aa33.55■■■□□ 2.96
PHGDH-204ENST00000469443 CCDC88BA6NC98 1476 aa33.54■■■□□ 2.96
PHGDH-204ENST00000469443 FANCD2Q9BXW9 1451 aa33.54■■■□□ 2.96
PHGDH-204ENST00000469443 PRDM2Q13029 1718 aa33.53■■■□□ 2.96
PHGDH-204ENST00000469443 WDR62O43379 1518 aa33.48■■■□□ 2.95
PHGDH-204ENST00000469443 DNAJC5Q9H3Z4 198 aa33.34■■■□□ 2.93
PHGDH-204ENST00000469443 URB2Q14146 1524 aaKnown RBP33.24■■■□□ 2.91
PHGDH-204ENST00000469443 SUPT5HO00267 1087 aaKnown RBP33.02■■■□□ 2.88
PHGDH-204ENST00000469443 TOPBP1Q92547 1522 aa32.98■■■□□ 2.87
PHGDH-204ENST00000469443 ABCC8Q09428 1581 aa32.96■■■□□ 2.87
PHGDH-204ENST00000469443 DNMBPQ6XZF7 1577 aa32.93■■■□□ 2.86
PHGDH-204ENST00000469443 IFT140Q96RY7 1462 aa32.85■■■□□ 2.85
PHGDH-204ENST00000469443 ZNF608Q9ULD9 1512 aaPredicted RBP32.72■■■□□ 2.83
PHGDH-204ENST00000469443 TARBP1Q13395 1621 aaKnown RBP32.68■■■□□ 2.82
PHGDH-204ENST00000469443 POLA1P09884 1462 aaPredicted RBP32.67■■■□□ 2.82
PHGDH-204ENST00000469443 EIF4G3O43432 1585 aaKnown RBP32.64■■■□□ 2.82
PHGDH-204ENST00000469443 CUX1P39880 1505 aa32.61■■■□□ 2.81
PHGDH-204ENST00000469443 FGD5Q6ZNL6 1462 aa32.54■■■□□ 2.8
PHGDH-204ENST00000469443 RAD54L2Q9Y4B4 1467 aa32.52■■■□□ 2.8
PHGDH-204ENST00000469443 SOGA1O94964 1423 aa32.51■■■□□ 2.79
PHGDH-204ENST00000469443 OSCARQ8IYS5 282 aa32.49■■■□□ 2.79
PHGDH-204ENST00000469443 AQRO60306 1485 aaKnown RBP eCLIP32.48■■■□□ 2.792e-6■□□□□ 10.9
PHGDH-204ENST00000469443 WDR97A6NE52 1622 aa32.42■■■□□ 2.78
PHGDH-204ENST00000469443 TDRD9Q8NDG6 1382 aaKnown RBP32.35■■■□□ 2.77
PHGDH-204ENST00000469443 CHD1O14646 1710 aa32.34■■■□□ 2.77
PHGDH-204ENST00000469443 BIVM-ERCC5R4GMW8 1640 aa32.29■■■□□ 2.76
PHGDH-204ENST00000469443 TOP2BQ02880 1626 aa32.26■■■□□ 2.75
PHGDH-204ENST00000469443 WRNQ14191 1432 aaPredicted RBP eCLIP32.25■■■□□ 2.75
PHGDH-204ENST00000469443 SYNJ1O43426 1573 aa32.23■■■□□ 2.75
PHGDH-204ENST00000469443 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
PHGDH-204ENST00000469443 PBRM1Q86U86 1689 aa32.21■■■□□ 2.75
PHGDH-204ENST00000469443 GRIN2BQ13224 1484 aa32.19■■■□□ 2.74
PHGDH-204ENST00000469443 SNAPC4Q5SXM2 1469 aa32.19■■■□□ 2.74
PHGDH-204ENST00000469443 MAGI1Q96QZ7 1491 aaPredicted RBP32.16■■■□□ 2.74
PHGDH-204ENST00000469443 ABCA5Q8WWZ7 1642 aa32.15■■■□□ 2.74
PHGDH-204ENST00000469443 GAPVD1Q14C86 1478 aa32.15■■■□□ 2.74
PHGDH-204ENST00000469443 FBLN2P98095 1184 aa32.14■■■□□ 2.74
PHGDH-204ENST00000469443 RIMBP3CA6NJZ7 1639 aa32.1■■■□□ 2.73
PHGDH-204ENST00000469443 RIMBP3BA6NNM3 1639 aa32.1■■■□□ 2.73
PHGDH-204ENST00000469443 RIMBP3Q9UFD9 1639 aa32.1■■■□□ 2.73
PHGDH-204ENST00000469443 TRIM41Q8WV44 630 aa32.08■■■□□ 2.73
PHGDH-204ENST00000469443 SYNJ2O15056 1496 aa32.03■■■□□ 2.72
PHGDH-204ENST00000469443 ARHGEF11O15085 1522 aa32.02■■■□□ 2.72
PHGDH-204ENST00000469443 CHMP7Q8WUX9 453 aaPredicted RBP32■■■□□ 2.71
PHGDH-204ENST00000469443 CLASP1Q7Z460 1538 aa31.92■■■□□ 2.7
PHGDH-204ENST00000469443 ADAMTS12P58397 1594 aa31.86■■■□□ 2.69
PHGDH-204ENST00000469443 ERICH3Q5RHP9 1530 aa31.85■■■□□ 2.69
PHGDH-204ENST00000469443 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
PHGDH-204ENST00000469443 FHAD1B1AJZ9 1412 aa31.75■■■□□ 2.67
PHGDH-204ENST00000469443 ARAP1Q96P48 1450 aa31.73■■■□□ 2.67
PHGDH-204ENST00000469443 CYB5RLQ6IPT4 315 aa31.68■■■□□ 2.66
PHGDH-204ENST00000469443 CEP170Q5SW79 1584 aa31.66■■■□□ 2.66
PHGDH-204ENST00000469443 NUP160Q12769 1436 aa31.65■■■□□ 2.66
PHGDH-204ENST00000469443 KIF27Q86VH2 1401 aa31.59■■■□□ 2.65
PHGDH-204ENST00000469443 CUL7Q14999 1698 aa31.52■■■□□ 2.64
PHGDH-204ENST00000469443 SHROOM2Q13796 1616 aa31.5■■■□□ 2.63
PHGDH-204ENST00000469443 IGF1RP08069 1367 aa31.49■■■□□ 2.63
PHGDH-204ENST00000469443 ERCC6L2Q5T890 1561 aa31.43■■■□□ 2.62
PHGDH-204ENST00000469443 RUSC2Q8N2Y8 1516 aa31.41■■■□□ 2.62
PHGDH-204ENST00000469443 CARMIL1Q5VZK9 1371 aa31.3■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms