RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 NISCHQ9Y2I1 1504 aa22.33■■□□□ 1.17
SNHG1-215ENST00000540904 AEBP2Q6ZN18 517 aaPredicted RBP20.21■□□□□ 0.83
SNHG1-215ENST00000540904 CCDC180Q9P1Z9 1646 aa19.78■□□□□ 0.76
SNHG1-215ENST00000540904 ABCC9O60706 1549 aa19.48■□□□□ 0.71
SNHG1-215ENST00000540904 CHIC1Q5VXU3 224 aa18.93■□□□□ 0.62
SNHG1-215ENST00000540904 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
SNHG1-215ENST00000540904 RB1CC1Q8TDY2 1594 aa18.68■□□□□ 0.58
SNHG1-215ENST00000540904 NACADO15069 1562 aa18.65■□□□□ 0.58
SNHG1-215ENST00000540904 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
SNHG1-215ENST00000540904 MYO15BQ96JP2 1530 aa18.52■□□□□ 0.56
SNHG1-215ENST00000540904 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
SNHG1-215ENST00000540904 PABPN1Q86U42 306 aaKnown RBP eCLIP18.25■□□□□ 0.51
SNHG1-215ENST00000540904 UNC13AQ9UPW8 1703 aa18.18■□□□□ 0.5
SNHG1-215ENST00000540904 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
SNHG1-215ENST00000540904 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
SNHG1-215ENST00000540904 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
SNHG1-215ENST00000540904 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
SNHG1-215ENST00000540904 EIF4G1Q04637 1599 aaKnown RBP17.64■□□□□ 0.41
SNHG1-215ENST00000540904 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
SNHG1-215ENST00000540904 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
SNHG1-215ENST00000540904 SMARCA4P51532 1647 aa17.3■□□□□ 0.36
SNHG1-215ENST00000540904 BAZ1AQ9NRL2 1556 aaPredicted RBP17.3■□□□□ 0.36
SNHG1-215ENST00000540904 SENP3Q9H4L4 574 aaPredicted RBP17.29■□□□□ 0.36
SNHG1-215ENST00000540904 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
SNHG1-215ENST00000540904 NCAPD3P42695 1498 aa17.23■□□□□ 0.35
SNHG1-215ENST00000540904 MROH2BQ7Z745 1585 aa17.23■□□□□ 0.35
SNHG1-215ENST00000540904 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
SNHG1-215ENST00000540904 BAZ1BQ9UIG0 1483 aaKnown RBP17.12■□□□□ 0.33
SNHG1-215ENST00000540904 HMGXB3Q12766 1538 aa17.11■□□□□ 0.33
SNHG1-215ENST00000540904 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
SNHG1-215ENST00000540904 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
SNHG1-215ENST00000540904 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
SNHG1-215ENST00000540904 WIZO95785 1651 aa17.01■□□□□ 0.31
SNHG1-215ENST00000540904 NESP48681 1621 aa16.85■□□□□ 0.29
SNHG1-215ENST00000540904 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
SNHG1-215ENST00000540904 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
SNHG1-215ENST00000540904 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
SNHG1-215ENST00000540904 LAMC3Q9Y6N6 1575 aa16.75■□□□□ 0.27
SNHG1-215ENST00000540904 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
SNHG1-215ENST00000540904 SUPT5HO00267 1087 aaKnown RBP16.67■□□□□ 0.26
SNHG1-215ENST00000540904 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
SNHG1-215ENST00000540904 CFTRP13569 1480 aa16.63■□□□□ 0.25
SNHG1-215ENST00000540904 KIF21AQ7Z4S6 1674 aa16.57■□□□□ 0.24
SNHG1-215ENST00000540904 CUX2O14529 1486 aa16.57■□□□□ 0.24
SNHG1-215ENST00000540904 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
SNHG1-215ENST00000540904 THOC2Q8NI27 1593 aaKnown RBP16.53■□□□□ 0.24
SNHG1-215ENST00000540904 CEP164Q9UPV0 1460 aa16.53■□□□□ 0.24
SNHG1-215ENST00000540904 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
SNHG1-215ENST00000540904 WDR62O43379 1518 aa16.42■□□□□ 0.22
SNHG1-215ENST00000540904 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
SNHG1-215ENST00000540904 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
SNHG1-215ENST00000540904 TOPBP1Q92547 1522 aa16.28■□□□□ 0.2
SNHG1-215ENST00000540904 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
SNHG1-215ENST00000540904 DNMBPQ6XZF7 1577 aa16.23■□□□□ 0.19
SNHG1-215ENST00000540904 IFT140Q96RY7 1462 aa16.18■□□□□ 0.18
SNHG1-215ENST00000540904 CUX1P39880 1505 aa16.15■□□□□ 0.18
SNHG1-215ENST00000540904 POLA1P09884 1462 aaPredicted RBP16.15■□□□□ 0.18
SNHG1-215ENST00000540904 FOXD1Q16676 465 aa16.13■□□□□ 0.17
SNHG1-215ENST00000540904 ZNF608Q9ULD9 1512 aaPredicted RBP16.13■□□□□ 0.17
SNHG1-215ENST00000540904 DNAJC5Q9H3Z4 198 aa16.12■□□□□ 0.17
SNHG1-215ENST00000540904 SOGA1O94964 1423 aa16.11■□□□□ 0.17
SNHG1-215ENST00000540904 FGD5Q6ZNL6 1462 aa16.1■□□□□ 0.17
SNHG1-215ENST00000540904 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
SNHG1-215ENST00000540904 TARBP1Q13395 1621 aaKnown RBP16.07■□□□□ 0.16
SNHG1-215ENST00000540904 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
SNHG1-215ENST00000540904 AQRO60306 1485 aaKnown RBP eCLIP16.04■□□□□ 0.168e-14■■■■■ 41.4
SNHG1-215ENST00000540904 TDRD9Q8NDG6 1382 aaKnown RBP16.03■□□□□ 0.16
SNHG1-215ENST00000540904 EIF4G3O43432 1585 aaKnown RBP16.02■□□□□ 0.16
SNHG1-215ENST00000540904 SYNJ1O43426 1573 aa16■□□□□ 0.15
SNHG1-215ENST00000540904 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
SNHG1-215ENST00000540904 BIVM-ERCC5R4GMW8 1640 aa15.96■□□□□ 0.15
SNHG1-215ENST00000540904 OSCARQ8IYS5 282 aa15.95■□□□□ 0.14
SNHG1-215ENST00000540904 ABCA10Q8WWZ4 1543 aa15.94■□□□□ 0.14
SNHG1-215ENST00000540904 WDR97A6NE52 1622 aa15.91■□□□□ 0.14
SNHG1-215ENST00000540904 FBLN2P98095 1184 aa15.91■□□□□ 0.14
SNHG1-215ENST00000540904 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
SNHG1-215ENST00000540904 GRIN2BQ13224 1484 aa15.9■□□□□ 0.14
SNHG1-215ENST00000540904 SNAPC4Q5SXM2 1469 aa15.89■□□□□ 0.13
SNHG1-215ENST00000540904 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
SNHG1-215ENST00000540904 ABCA5Q8WWZ7 1642 aa15.84■□□□□ 0.13
SNHG1-215ENST00000540904 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
SNHG1-215ENST00000540904 PBRM1Q86U86 1689 aa15.79■□□□□ 0.12
SNHG1-215ENST00000540904 CHD1O14646 1710 aa15.79■□□□□ 0.12
SNHG1-215ENST00000540904 SYNJ2O15056 1496 aa15.78■□□□□ 0.12
SNHG1-215ENST00000540904 KIF27Q86VH2 1401 aa15.74■□□□□ 0.11
SNHG1-215ENST00000540904 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
SNHG1-215ENST00000540904 FHAD1B1AJZ9 1412 aa15.72■□□□□ 0.11
SNHG1-215ENST00000540904 TRIM41Q8WV44 630 aa15.72■□□□□ 0.11
SNHG1-215ENST00000540904 ADAMTS12P58397 1594 aa15.7■□□□□ 0.1
SNHG1-215ENST00000540904 GRIN2AQ12879 1464 aa15.69■□□□□ 0.1
SNHG1-215ENST00000540904 IGF1RP08069 1367 aa15.67■□□□□ 0.1
SNHG1-215ENST00000540904 ARHGEF11O15085 1522 aa15.64■□□□□ 0.09
SNHG1-215ENST00000540904 CLASP1Q7Z460 1538 aa15.64■□□□□ 0.09
SNHG1-215ENST00000540904 RIMBP3CA6NJZ7 1639 aa15.63■□□□□ 0.09
SNHG1-215ENST00000540904 RIMBP3BA6NNM3 1639 aa15.63■□□□□ 0.09
SNHG1-215ENST00000540904 RIMBP3Q9UFD9 1639 aa15.63■□□□□ 0.09
SNHG1-215ENST00000540904 NUP160Q12769 1436 aa15.61■□□□□ 0.09
SNHG1-215ENST00000540904 RUSC2Q8N2Y8 1516 aa15.59■□□□□ 0.09
SNHG1-215ENST00000540904 CEP170Q5SW79 1584 aa15.59■□□□□ 0.09
SNHG1-215ENST00000540904 CARMIL1Q5VZK9 1371 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms