RNA–Protein interactions for RNA: ENST00000474100.1

PSMB4-203, Transcript of proteasome subunit beta 4, humanhuman

TSL 5

Gene PSMB4, Length 755 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMB4-203ENST00000474100 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
PSMB4-203ENST00000474100 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
PSMB4-203ENST00000474100 SENP3Q9H4L4 574 aaPredicted RBP18.41■□□□□ 0.54
PSMB4-203ENST00000474100 NISCHQ9Y2I1 1504 aa18.18■□□□□ 0.5
PSMB4-203ENST00000474100 POTEDQ86YR6 584 aa18.17■□□□□ 0.5
PSMB4-203ENST00000474100 PHF23Q9BUL5 403 aaPredicted RBP17.97■□□□□ 0.47
PSMB4-203ENST00000474100 FOXD1Q16676 465 aa17.26■□□□□ 0.35
PSMB4-203ENST00000474100 ABCC9O60706 1549 aa16.9■□□□□ 0.3
PSMB4-203ENST00000474100 MSH5O43196 834 aa16.66■□□□□ 0.26
PSMB4-203ENST00000474100 CCDC180Q9P1Z9 1646 aa16.41■□□□□ 0.22
PSMB4-203ENST00000474100 DNAJC5BQ9UF47 199 aa16.16■□□□□ 0.18
PSMB4-203ENST00000474100 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
PSMB4-203ENST00000474100 PIAS4Q8N2W9 510 aaPredicted RBP15.86■□□□□ 0.13
PSMB4-203ENST00000474100 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
PSMB4-203ENST00000474100 DCAF8L2P0C7V8 631 aa15.68■□□□□ 0.1
PSMB4-203ENST00000474100 NACADO15069 1562 aa15.66■□□□□ 0.1
PSMB4-203ENST00000474100 UNC13AQ9UPW8 1703 aa15.4■□□□□ 0.06
PSMB4-203ENST00000474100 BICRAQ9NZM4 1560 aa15.37■□□□□ 0.05
PSMB4-203ENST00000474100 MYO15BQ96JP2 1530 aa15.28■□□□□ 0.04
PSMB4-203ENST00000474100 CECR2Q9BXF3 1484 aa15.25■□□□□ 0.03
PSMB4-203ENST00000474100 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
PSMB4-203ENST00000474100 CC2D2AQ9P2K1 1620 aa15.18■□□□□ 0.02
PSMB4-203ENST00000474100 SHROOM4Q9ULL8 1493 aa15.14■□□□□ 0.01
PSMB4-203ENST00000474100 DNAJC5Q9H3Z4 198 aa15.11■□□□□ 0.01
PSMB4-203ENST00000474100 ADRA2BP18089 450 aa15.1■□□□□ 0.01
PSMB4-203ENST00000474100 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
PSMB4-203ENST00000474100 SCRIBQ14160 1630 aa15.02□□□□□ -0.01
PSMB4-203ENST00000474100 ZCCHC6Q5VYS8 1495 aaKnown RBP14.99□□□□□ -0.01
PSMB4-203ENST00000474100 CACNB1Q02641 598 aaPredicted RBP14.96□□□□□ -0.01
PSMB4-203ENST00000474100 DCAF1Q9Y4B6 1507 aa14.96□□□□□ -0.02
PSMB4-203ENST00000474100 PLPPR3Q6T4P5 718 aa14.79□□□□□ -0.04
PSMB4-203ENST00000474100 CUX2O14529 1486 aa14.68□□□□□ -0.06
PSMB4-203ENST00000474100 ERCC6Q03468 1493 aa14.64□□□□□ -0.07
PSMB4-203ENST00000474100 NCAPD3P42695 1498 aa14.47□□□□□ -0.09
PSMB4-203ENST00000474100 DMRT2Q9Y5R5 561 aa14.41□□□□□ -0.1
PSMB4-203ENST00000474100 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
PSMB4-203ENST00000474100 ATAD2BQ9ULI0 1458 aa14.38□□□□□ -0.11
PSMB4-203ENST00000474100 NESP48681 1621 aa14.38□□□□□ -0.11
PSMB4-203ENST00000474100 SMARCA2P51531 1590 aa14.32□□□□□ -0.12
PSMB4-203ENST00000474100 HMGXB3Q12766 1538 aa14.31□□□□□ -0.12
PSMB4-203ENST00000474100 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
PSMB4-203ENST00000474100 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
PSMB4-203ENST00000474100 SMARCA4P51532 1647 aa14.25□□□□□ -0.13
PSMB4-203ENST00000474100 MAPK8IP2Q13387 824 aaPredicted RBP14.2□□□□□ -0.14
PSMB4-203ENST00000474100 LAMC3Q9Y6N6 1575 aa14.19□□□□□ -0.14
PSMB4-203ENST00000474100 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
PSMB4-203ENST00000474100 BAZ1AQ9NRL2 1556 aaPredicted RBP14.14□□□□□ -0.15
PSMB4-203ENST00000474100 KIF21AQ7Z4S6 1674 aa14.12□□□□□ -0.15
PSMB4-203ENST00000474100 PEG3Q9GZU2 1588 aa14.08□□□□□ -0.16
PSMB4-203ENST00000474100 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
PSMB4-203ENST00000474100 MRC2Q9UBG0 1479 aa14.06□□□□□ -0.16
PSMB4-203ENST00000474100 CADPSQ9ULU8 1353 aa14.05□□□□□ -0.16
PSMB4-203ENST00000474100 MROH2BQ7Z745 1585 aa14.02□□□□□ -0.16
PSMB4-203ENST00000474100 POTEHQ6S545 545 aa14.02□□□□□ -0.17
PSMB4-203ENST00000474100 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
PSMB4-203ENST00000474100 WDR62O43379 1518 aa14□□□□□ -0.17
PSMB4-203ENST00000474100 CEP164Q9UPV0 1460 aa13.94□□□□□ -0.18
PSMB4-203ENST00000474100 SCAF1Q9H7N4 1312 aaKnown RBP13.9□□□□□ -0.19
PSMB4-203ENST00000474100 FANCD2Q9BXW9 1451 aa13.89□□□□□ -0.19
PSMB4-203ENST00000474100 DCAF8L1A6NGE4 600 aa13.84□□□□□ -0.19
PSMB4-203ENST00000474100 C1QBPQ07021 282 aaKnown RBP13.82□□□□□ -0.2
PSMB4-203ENST00000474100 WIZO95785 1651 aa13.81□□□□□ -0.2
PSMB4-203ENST00000474100 RIMBP3CA6NJZ7 1639 aa13.79□□□□□ -0.2
PSMB4-203ENST00000474100 RIMBP3BA6NNM3 1639 aa13.79□□□□□ -0.2
PSMB4-203ENST00000474100 RIMBP3Q9UFD9 1639 aa13.79□□□□□ -0.2
PSMB4-203ENST00000474100 CFTRP13569 1480 aa13.78□□□□□ -0.2
PSMB4-203ENST00000474100 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.21
PSMB4-203ENST00000474100 TRHP20396 242 aaPredicted RBP13.74□□□□□ -0.21
PSMB4-203ENST00000474100 CYB5RLQ6IPT4 315 aa13.73□□□□□ -0.21
PSMB4-203ENST00000474100 ARHGEF11O15085 1522 aa13.73□□□□□ -0.21
PSMB4-203ENST00000474100 ZNF608Q9ULD9 1512 aaPredicted RBP13.68□□□□□ -0.22
PSMB4-203ENST00000474100 IFT140Q96RY7 1462 aa13.67□□□□□ -0.22
PSMB4-203ENST00000474100 TOP2AP11388 1531 aaKnown RBP13.63□□□□□ -0.23
PSMB4-203ENST00000474100 FBLN2P98095 1184 aa13.61□□□□□ -0.23
PSMB4-203ENST00000474100 RSF1Q96T23 1441 aaPredicted RBP13.61□□□□□ -0.23
PSMB4-203ENST00000474100 ARAP1Q96P48 1450 aa13.57□□□□□ -0.24
PSMB4-203ENST00000474100 TOPBP1Q92547 1522 aa13.57□□□□□ -0.24
PSMB4-203ENST00000474100 EIF4G3O43432 1585 aaKnown RBP13.55□□□□□ -0.24
PSMB4-203ENST00000474100 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.244e-8■■■■■ 62.9
PSMB4-203ENST00000474100 ABCC8Q09428 1581 aa13.52□□□□□ -0.25
PSMB4-203ENST00000474100 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
PSMB4-203ENST00000474100 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
PSMB4-203ENST00000474100 CHD1O14646 1710 aa13.49□□□□□ -0.25
PSMB4-203ENST00000474100 DNMBPQ6XZF7 1577 aa13.47□□□□□ -0.25
PSMB4-203ENST00000474100 HOXD11P31277 338 aaPredicted RBP13.44□□□□□ -0.26
PSMB4-203ENST00000474100 TARBP1Q13395 1621 aaKnown RBP13.42□□□□□ -0.26
PSMB4-203ENST00000474100 CHMP7Q8WUX9 453 aaPredicted RBP13.41□□□□□ -0.26
PSMB4-203ENST00000474100 TDRD9Q8NDG6 1382 aaKnown RBP13.41□□□□□ -0.26
PSMB4-203ENST00000474100 POLA1P09884 1462 aaPredicted RBP13.41□□□□□ -0.26
PSMB4-203ENST00000474100 RAD54L2Q9Y4B4 1467 aa13.39□□□□□ -0.27
PSMB4-203ENST00000474100 SNAPC4Q5SXM2 1469 aa13.38□□□□□ -0.27
PSMB4-203ENST00000474100 SOGA1O94964 1423 aa13.38□□□□□ -0.27
PSMB4-203ENST00000474100 SYNJ1O43426 1573 aa13.35□□□□□ -0.27
PSMB4-203ENST00000474100 CLASP1Q7Z460 1538 aa13.34□□□□□ -0.27
PSMB4-203ENST00000474100 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
PSMB4-203ENST00000474100 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
PSMB4-203ENST00000474100 GRIN2BQ13224 1484 aa13.29□□□□□ -0.28
PSMB4-203ENST00000474100 FGD5Q6ZNL6 1462 aa13.29□□□□□ -0.28
PSMB4-203ENST00000474100 SYNJ2O15056 1496 aa13.28□□□□□ -0.28
PSMB4-203ENST00000474100 WDR97A6NE52 1622 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms