RNA–Protein interactions for RNA: ENST00000539921.5

SNHG1-211, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 1,071 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-211ENST00000539921 AEBP2Q6ZN18 517 aaPredicted RBP13.57□□□□□ -0.24
SNHG1-211ENST00000539921 CHIC1Q5VXU3 224 aa13.51□□□□□ -0.25
SNHG1-211ENST00000539921 PHF23Q9BUL5 403 aaPredicted RBP11.96□□□□□ -0.49
SNHG1-211ENST00000539921 SENP3Q9H4L4 574 aaPredicted RBP11.39□□□□□ -0.59
SNHG1-211ENST00000539921 PELP1Q8IZL8 1130 aaKnown RBP11.15□□□□□ -0.62
SNHG1-211ENST00000539921 PLPPR3Q6T4P5 718 aa11.1□□□□□ -0.63
SNHG1-211ENST00000539921 MYT1Q01538 1121 aa11.05□□□□□ -0.64
SNHG1-211ENST00000539921 TTBK1Q5TCY1 1321 aaPredicted RBP10.65□□□□□ -0.7
SNHG1-211ENST00000539921 FOXD1Q16676 465 aa10.58□□□□□ -0.72
SNHG1-211ENST00000539921 ADRA2BP18089 450 aa10.48□□□□□ -0.73
SNHG1-211ENST00000539921 PPP6R1Q9UPN7 881 aa10.46□□□□□ -0.73
SNHG1-211ENST00000539921 HRCP23327 699 aa10.35□□□□□ -0.75
SNHG1-211ENST00000539921 NISCHQ9Y2I1 1504 aa10.1□□□□□ -0.79
SNHG1-211ENST00000539921 PIAS4Q8N2W9 510 aaPredicted RBP10.07□□□□□ -0.8
SNHG1-211ENST00000539921 KCNA4P22459 653 aa10.04□□□□□ -0.8
SNHG1-211ENST00000539921 ERICH6Q7L0X2 663 aa9.89□□□□□ -0.83
SNHG1-211ENST00000539921 SCAF1Q9H7N4 1312 aaKnown RBP9.86□□□□□ -0.83
SNHG1-211ENST00000539921 PPP4R3CPQ6ZMV5 832 aa9.86□□□□□ -0.83
SNHG1-211ENST00000539921 EHMT2Q96KQ7 1210 aa9.86□□□□□ -0.83
SNHG1-211ENST00000539921 ZEB1P37275 1124 aaPredicted RBP9.8□□□□□ -0.84
SNHG1-211ENST00000539921 APLP2Q06481 763 aa9.76□□□□□ -0.85
SNHG1-211ENST00000539921 DCAF1Q9Y4B6 1507 aa9.76□□□□□ -0.85
SNHG1-211ENST00000539921 CCDC180Q9P1Z9 1646 aa9.71□□□□□ -0.85
SNHG1-211ENST00000539921 CENPBP07199 599 aaPredicted RBP9.71□□□□□ -0.86
SNHG1-211ENST00000539921 PRKCSHP14314 528 aaPredicted RBP9.69□□□□□ -0.86
SNHG1-211ENST00000539921 BCL11AQ9H165 835 aa9.65□□□□□ -0.86
SNHG1-211ENST00000539921 ACIN1Q9UKV3 1341 aaKnown RBP9.64□□□□□ -0.87
SNHG1-211ENST00000539921 NCBP3Q53F19 620 aaKnown RBP9.63□□□□□ -0.87
SNHG1-211ENST00000539921 PPARGC1BQ86YN6 1023 aaKnown RBP9.61□□□□□ -0.87
SNHG1-211ENST00000539921 SLC4A1APQ9BWU0 796 aaKnown RBP9.59□□□□□ -0.87
SNHG1-211ENST00000539921 MSH5O43196 834 aa9.57□□□□□ -0.88
SNHG1-211ENST00000539921 NPM3O75607 178 aaKnown RBP9.56□□□□□ -0.88
SNHG1-211ENST00000539921 PCGF6Q9BYE7 350 aa9.56□□□□□ -0.88
SNHG1-211ENST00000539921 CLSPNQ9HAW4 1339 aa9.51□□□□□ -0.89
SNHG1-211ENST00000539921 MYO15BQ96JP2 1530 aa9.51□□□□□ -0.89
SNHG1-211ENST00000539921 TRIM26Q12899 539 aaPredicted RBP9.47□□□□□ -0.89
SNHG1-211ENST00000539921 CNKSR2Q8WXI2 1034 aa9.47□□□□□ -0.89
SNHG1-211ENST00000539921 FAM9AQ8IZU1 332 aaPredicted RBP9.45□□□□□ -0.9
SNHG1-211ENST00000539921 CSRNP3Q8WYN3 585 aa9.45□□□□□ -0.9
SNHG1-211ENST00000539921 MAPK8IP2Q13387 824 aaPredicted RBP9.43□□□□□ -0.9
SNHG1-211ENST00000539921 ANP32EQ9BTT0 268 aa9.43□□□□□ -0.9
SNHG1-211ENST00000539921 GTF3C3Q9Y5Q9 886 aa9.41□□□□□ -0.9
SNHG1-211ENST00000539921 NEUROD1Q13562 356 aa9.4□□□□□ -0.9
SNHG1-211ENST00000539921 SLC24A1O60721 1099 aa9.39□□□□□ -0.91
SNHG1-211ENST00000539921 MYT1LQ9UL68 1186 aa9.3□□□□□ -0.92
SNHG1-211ENST00000539921 DAXXQ9UER7 740 aaPredicted RBP9.27□□□□□ -0.93
SNHG1-211ENST00000539921 ZBTB22O15209 634 aa9.26□□□□□ -0.93
SNHG1-211ENST00000539921 RNF216Q9NWF9 866 aaPredicted RBP9.2□□□□□ -0.94
SNHG1-211ENST00000539921 ERICH6BQ5W0A0 696 aa9.16□□□□□ -0.94
SNHG1-211ENST00000539921 DMRT2Q9Y5R5 561 aa9.15□□□□□ -0.94
SNHG1-211ENST00000539921 UBE2Q2Q8WVN8 375 aa9.13□□□□□ -0.95
SNHG1-211ENST00000539921 DIEXFQ68CQ4 756 aaKnown RBP9.12□□□□□ -0.95
SNHG1-211ENST00000539921 DNAJC5BQ9UF47 199 aa9.1□□□□□ -0.95
SNHG1-211ENST00000539921 FOXD4L1Q9NU39 408 aa9.09□□□□□ -0.95
SNHG1-211ENST00000539921 HOXD11P31277 338 aaPredicted RBP9.08□□□□□ -0.96
SNHG1-211ENST00000539921 TRIM41Q8WV44 630 aa9.07□□□□□ -0.96
SNHG1-211ENST00000539921 EIF5BO60841 1220 aaKnown RBP9.04□□□□□ -0.96
SNHG1-211ENST00000539921 TSHZ2Q9NRE2 1034 aa9.04□□□□□ -0.96
SNHG1-211ENST00000539921 SLC4A2P04920 1241 aa8.96□□□□□ -0.98
SNHG1-211ENST00000539921 SUPT16HQ9Y5B9 1047 aaKnown RBP8.95□□□□□ -0.98
SNHG1-211ENST00000539921 FANCIQ9NVI1 1328 aa8.91□□□□□ -0.98
SNHG1-211ENST00000539921 ZNF316A6NFI3 1004 aaPredicted RBP8.91□□□□□ -0.98
SNHG1-211ENST00000539921 SUPT5HO00267 1087 aaKnown RBP8.89□□□□□ -0.99
SNHG1-211ENST00000539921 DCAF8L1A6NGE4 600 aa8.82□□□□□ -1
SNHG1-211ENST00000539921 ANO8Q9HCE9 1232 aaPredicted RBP8.81□□□□□ -1
SNHG1-211ENST00000539921 CCER1Q8TC90 406 aaPredicted RBP8.8□□□□□ -1
SNHG1-211ENST00000539921 MYCNP04198 464 aaPredicted RBP8.79□□□□□ -1
SNHG1-211ENST00000539921 PKNOX2Q96KN3 472 aa8.79□□□□□ -1
SNHG1-211ENST00000539921 RBM19Q9Y4C8 960 aaKnown RBP8.77□□□□□ -1.01
SNHG1-211ENST00000539921 ZCCHC6Q5VYS8 1495 aaKnown RBP8.77□□□□□ -1.01
SNHG1-211ENST00000539921 LOC105371045A0A1W2PR82 267 aa8.74□□□□□ -1.01
SNHG1-211ENST00000539921 DEKP35659 375 aaKnown RBP8.74□□□□□ -1.01
SNHG1-211ENST00000539921 WRNQ14191 1432 aaPredicted RBP eCLIP8.73□□□□□ -1.01
SNHG1-211ENST00000539921 GLIPR1L2Q4G1C9 344 aa8.72□□□□□ -1.01
SNHG1-211ENST00000539921 MIER1Q8N108 512 aa8.72□□□□□ -1.01
SNHG1-211ENST00000539921 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.69□□□□□ -1.02
SNHG1-211ENST00000539921 SALL2Q9Y467 1007 aaPredicted RBP8.69□□□□□ -1.02
SNHG1-211ENST00000539921 C11orf95C9JLR9 678 aaPredicted RBP8.68□□□□□ -1.02
SNHG1-211ENST00000539921 ATXN8OSP0DMR3 200 aa8.68□□□□□ -1.02
SNHG1-211ENST00000539921 YTHDC1Q96MU7 727 aaKnown RBP8.68□□□□□ -1.02
SNHG1-211ENST00000539921 PODXL2Q9NZ53 605 aa8.67□□□□□ -1.02
SNHG1-211ENST00000539921 SHROOM4Q9ULL8 1493 aa8.67□□□□□ -1.02
SNHG1-211ENST00000539921 NEFLP07196 543 aa8.66□□□□□ -1.02
SNHG1-211ENST00000539921 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.64□□□□□ -1.03
SNHG1-211ENST00000539921 ATF5Q9Y2D1 282 aaPredicted RBP8.62□□□□□ -1.03
SNHG1-211ENST00000539921 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
SNHG1-211ENST00000539921 RSPH6AQ9H0K4 717 aa8.61□□□□□ -1.03
SNHG1-211ENST00000539921 U3KPZ7 1027 aaPredicted RBP8.6□□□□□ -1.03
SNHG1-211ENST00000539921 USP35Q9P2H5 1018 aa8.59□□□□□ -1.03
SNHG1-211ENST00000539921 FKBP8Q14318 412 aa8.57□□□□□ -1.04
SNHG1-211ENST00000539921 CDK11AQ9UQ88 783 aaPredicted RBP8.54□□□□□ -1.04
SNHG1-211ENST00000539921 WASHC2CQ9Y4E1 1318 aa8.54□□□□□ -1.04
SNHG1-211ENST00000539921 RTL5Q5HYW3 569 aaPredicted RBP8.53□□□□□ -1.04
SNHG1-211ENST00000539921 RTN4Q9NQC3 1192 aaKnown RBP8.53□□□□□ -1.04
SNHG1-211ENST00000539921 WASHC2AQ641Q2 1341 aa8.53□□□□□ -1.04
SNHG1-211ENST00000539921 HNRNPUL2Q1KMD3 747 aaKnown RBP8.52□□□□□ -1.05
SNHG1-211ENST00000539921 SAMD1Q6SPF0 538 aaPredicted RBP8.52□□□□□ -1.05
SNHG1-211ENST00000539921 NOP58Q9Y2X3 529 aaKnown RBP8.52□□□□□ -1.05
SNHG1-211ENST00000539921 CCDC136Q96JN2 1154 aa8.5□□□□□ -1.05
SNHG1-211ENST00000539921 PLEKHG5O94827 1062 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms