RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 NISCHQ9Y2I1 1504 aa36.57■■■■□ 3.45
PHGDH-229ENST00000641891 CCDC180Q9P1Z9 1646 aa31.38■■■□□ 2.61
PHGDH-229ENST00000641891 ZCCHC6Q5VYS8 1495 aaKnown RBP30.86■■■□□ 2.53
PHGDH-229ENST00000641891 SHROOM4Q9ULL8 1493 aa30.74■■■□□ 2.51
PHGDH-229ENST00000641891 DCAF8L2P0C7V8 631 aa30.27■■■□□ 2.44
PHGDH-229ENST00000641891 DCAF1Q9Y4B6 1507 aa30.05■■■□□ 2.4
PHGDH-229ENST00000641891 SUPT5HO00267 1087 aaKnown RBP29.89■■■□□ 2.38
PHGDH-229ENST00000641891 MYO15BQ96JP2 1530 aa29.35■■■□□ 2.29
PHGDH-229ENST00000641891 ABCC9O60706 1549 aa29.34■■■□□ 2.29
PHGDH-229ENST00000641891 SCRIBQ14160 1630 aa29.28■■■□□ 2.28
PHGDH-229ENST00000641891 NACADO15069 1562 aa29.07■■■□□ 2.24
PHGDH-229ENST00000641891 CHIC1Q5VXU3 224 aa28.89■■■□□ 2.22
PHGDH-229ENST00000641891 RSF1Q96T23 1441 aaPredicted RBP28.73■■■□□ 2.19
PHGDH-229ENST00000641891 RB1CC1Q8TDY2 1594 aa28.69■■■□□ 2.18
PHGDH-229ENST00000641891 CECR2Q9BXF3 1484 aa28.53■■■□□ 2.16
PHGDH-229ENST00000641891 MROH2BQ7Z745 1585 aa28.4■■■□□ 2.14
PHGDH-229ENST00000641891 UNC13AQ9UPW8 1703 aa28.3■■■□□ 2.12
PHGDH-229ENST00000641891 WIZO95785 1651 aa28.24■■■□□ 2.11
PHGDH-229ENST00000641891 BAZ1AQ9NRL2 1556 aaPredicted RBP28.13■■■□□ 2.09
PHGDH-229ENST00000641891 LOC105371045A0A1W2PR82 267 aa27.98■■■□□ 2.07
PHGDH-229ENST00000641891 SMARCA4P51532 1647 aa27.97■■■□□ 2.07
PHGDH-229ENST00000641891 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.06
PHGDH-229ENST00000641891 PABPN1Q86U42 306 aaKnown RBP eCLIP27.92■■■□□ 2.06
PHGDH-229ENST00000641891 TRIM41Q8WV44 630 aa27.89■■■□□ 2.06
PHGDH-229ENST00000641891 TOP2AP11388 1531 aaKnown RBP27.81■■■□□ 2.04
PHGDH-229ENST00000641891 EIF4G1Q04637 1599 aaKnown RBP27.71■■■□□ 2.03
PHGDH-229ENST00000641891 SMARCA2P51531 1590 aa27.64■■■□□ 2.01
PHGDH-229ENST00000641891 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.01
PHGDH-229ENST00000641891 FAM9AQ8IZU1 332 aaPredicted RBP27.63■■■□□ 2.01
PHGDH-229ENST00000641891 PEG3Q9GZU2 1588 aa27.47■■□□□ 1.99
PHGDH-229ENST00000641891 PCGF6Q9BYE7 350 aa27.47■■□□□ 1.99
PHGDH-229ENST00000641891 ABCC8Q09428 1581 aa27.42■■□□□ 1.98
PHGDH-229ENST00000641891 EHMT2Q96KQ7 1210 aa27.38■■□□□ 1.97
PHGDH-229ENST00000641891 ATAD2BQ9ULI0 1458 aa27.33■■□□□ 1.97
PHGDH-229ENST00000641891 BAZ1BQ9UIG0 1483 aaKnown RBP27.23■■□□□ 1.95
PHGDH-229ENST00000641891 HRCP23327 699 aa27.18■■□□□ 1.94
PHGDH-229ENST00000641891 TRIM26Q12899 539 aaPredicted RBP27.08■■□□□ 1.93
PHGDH-229ENST00000641891 SOGA1O94964 1423 aa27.04■■□□□ 1.92
PHGDH-229ENST00000641891 WRNQ14191 1432 aaPredicted RBP eCLIP27■■□□□ 1.91
PHGDH-229ENST00000641891 RUSC2Q8N2Y8 1516 aa26.95■■□□□ 1.9
PHGDH-229ENST00000641891 SYNJ1O43426 1573 aa26.94■■□□□ 1.9
PHGDH-229ENST00000641891 HMGXB3Q12766 1538 aa26.88■■□□□ 1.89
PHGDH-229ENST00000641891 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
PHGDH-229ENST00000641891 EEA1Q15075 1411 aa26.84■■□□□ 1.89
PHGDH-229ENST00000641891 CSRNP3Q8WYN3 585 aa26.81■■□□□ 1.88
PHGDH-229ENST00000641891 PPARGC1BQ86YN6 1023 aaKnown RBP26.73■■□□□ 1.87
PHGDH-229ENST00000641891 CEP162Q5TB80 1403 aa26.71■■□□□ 1.87
PHGDH-229ENST00000641891 TNIKQ9UKE5 1360 aa26.69■■□□□ 1.86
PHGDH-229ENST00000641891 TOP2BQ02880 1626 aa26.64■■□□□ 1.86
PHGDH-229ENST00000641891 GOLGA3Q08378 1498 aa26.64■■□□□ 1.86
PHGDH-229ENST00000641891 UBTFP17480 764 aaKnown RBP26.63■■□□□ 1.85
PHGDH-229ENST00000641891 BIVM-ERCC5R4GMW8 1640 aa26.58■■□□□ 1.85
PHGDH-229ENST00000641891 KIF21BO75037 1637 aa26.55■■□□□ 1.84
PHGDH-229ENST00000641891 CEP164Q9UPV0 1460 aa26.54■■□□□ 1.84
PHGDH-229ENST00000641891 CFTRP13569 1480 aa26.54■■□□□ 1.84
PHGDH-229ENST00000641891 CUX1P39880 1505 aa26.49■■□□□ 1.83
PHGDH-229ENST00000641891 CC2D2AQ9P2K1 1620 aa26.47■■□□□ 1.83
PHGDH-229ENST00000641891 RAPGEF2Q9Y4G8 1499 aa26.42■■□□□ 1.82
PHGDH-229ENST00000641891 TTBK1Q5TCY1 1321 aaPredicted RBP26.39■■□□□ 1.81
PHGDH-229ENST00000641891 PRDM2Q13029 1718 aa26.38■■□□□ 1.81
PHGDH-229ENST00000641891 CADPSQ9ULU8 1353 aa26.3■■□□□ 1.8
PHGDH-229ENST00000641891 CLIP1P30622 1438 aa26.3■■□□□ 1.8
PHGDH-229ENST00000641891 ZEB1P37275 1124 aaPredicted RBP26.26■■□□□ 1.79
PHGDH-229ENST00000641891 PRXQ9BXM0 1461 aa26.23■■□□□ 1.79
PHGDH-229ENST00000641891 RANGAP1P46060 587 aaPredicted RBP26.2■■□□□ 1.79
PHGDH-229ENST00000641891 KIF27Q86VH2 1401 aa26.2■■□□□ 1.78
PHGDH-229ENST00000641891 ERICH3Q5RHP9 1530 aa26.2■■□□□ 1.78
PHGDH-229ENST00000641891 VPS8Q8N3P4 1428 aa26.14■■□□□ 1.78
PHGDH-229ENST00000641891 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.09■■□□□ 1.77
PHGDH-229ENST00000641891 FANCD2Q9BXW9 1451 aa26.07■■□□□ 1.76
PHGDH-229ENST00000641891 FGD5Q6ZNL6 1462 aa26.07■■□□□ 1.76
PHGDH-229ENST00000641891 CUX2O14529 1486 aa26.06■■□□□ 1.76
PHGDH-229ENST00000641891 NESP48681 1621 aa26.03■■□□□ 1.76
PHGDH-229ENST00000641891 CCER1Q8TC90 406 aaPredicted RBP25.98■■□□□ 1.75
PHGDH-229ENST00000641891 ARAP1Q96P48 1450 aa25.98■■□□□ 1.75
PHGDH-229ENST00000641891 IGF1RP08069 1367 aa25.95■■□□□ 1.74
PHGDH-229ENST00000641891 DNMBPQ6XZF7 1577 aa25.91■■□□□ 1.74
PHGDH-229ENST00000641891 APLP2Q06481 763 aa25.9■■□□□ 1.74
PHGDH-229ENST00000641891 TOPBP1Q92547 1522 aa25.87■■□□□ 1.73
PHGDH-229ENST00000641891 DNAJC5BQ9UF47 199 aa25.86■■□□□ 1.73
PHGDH-229ENST00000641891 RAD54L2Q9Y4B4 1467 aa25.84■■□□□ 1.73
PHGDH-229ENST00000641891 CARMIL1Q5VZK9 1371 aa25.83■■□□□ 1.72
PHGDH-229ENST00000641891 LAMC3Q9Y6N6 1575 aa25.82■■□□□ 1.72
PHGDH-229ENST00000641891 ARHGAP35Q9NRY4 1499 aa25.82■■□□□ 1.72
PHGDH-229ENST00000641891 POLA1P09884 1462 aaPredicted RBP25.82■■□□□ 1.72
PHGDH-229ENST00000641891 HNRNPUL2Q1KMD3 747 aaKnown RBP25.76■■□□□ 1.71
PHGDH-229ENST00000641891 ABCA10Q8WWZ4 1543 aa25.76■■□□□ 1.71
PHGDH-229ENST00000641891 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
PHGDH-229ENST00000641891 KANK4Q5T7N3 995 aaPredicted RBP25.71■■□□□ 1.71
PHGDH-229ENST00000641891 WDR97A6NE52 1622 aa25.63■■□□□ 1.69
PHGDH-229ENST00000641891 PDS5BQ9NTI5 1447 aa25.63■■□□□ 1.69
PHGDH-229ENST00000641891 KIF21AQ7Z4S6 1674 aa25.63■■□□□ 1.69
PHGDH-229ENST00000641891 CUL7Q14999 1698 aa25.57■■□□□ 1.68
PHGDH-229ENST00000641891 TDRD9Q8NDG6 1382 aaKnown RBP25.52■■□□□ 1.68
PHGDH-229ENST00000641891 ABCA5Q8WWZ7 1642 aa25.51■■□□□ 1.67
PHGDH-229ENST00000641891 P3H3Q8IVL6 736 aa25.49■■□□□ 1.67
PHGDH-229ENST00000641891 TIAM1Q13009 1591 aa25.47■■□□□ 1.67
PHGDH-229ENST00000641891 RRBP1Q9P2E9 1410 aaKnown RBP25.46■■□□□ 1.67
PHGDH-229ENST00000641891 CTTNBP2Q8WZ74 1663 aa25.46■■□□□ 1.67
PHGDH-229ENST00000641891 GAPVD1Q14C86 1478 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms