RNA–Protein interactions for RNA: ENST00000541578.5

SNHG1-217, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 588 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-217ENST00000541578 AEBP2Q6ZN18 517 aaPredicted RBP22.69■■□□□ 1.22
SNHG1-217ENST00000541578 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
SNHG1-217ENST00000541578 PHF23Q9BUL5 403 aaPredicted RBP19.32■□□□□ 0.68
SNHG1-217ENST00000541578 SENP3Q9H4L4 574 aaPredicted RBP19.32■□□□□ 0.68
SNHG1-217ENST00000541578 FOXD1Q16676 465 aa17.94■□□□□ 0.46
SNHG1-217ENST00000541578 PLPPR3Q6T4P5 718 aa17.81■□□□□ 0.44
SNHG1-217ENST00000541578 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
SNHG1-217ENST00000541578 ADRA2BP18089 450 aa17.11■□□□□ 0.33
SNHG1-217ENST00000541578 PIAS4Q8N2W9 510 aaPredicted RBP16.88■□□□□ 0.29
SNHG1-217ENST00000541578 MSH5O43196 834 aa16.63■□□□□ 0.25
SNHG1-217ENST00000541578 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
SNHG1-217ENST00000541578 PPP4R3CPQ6ZMV5 832 aa15.67■□□□□ 0.1
SNHG1-217ENST00000541578 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
SNHG1-217ENST00000541578 POTEDQ86YR6 584 aa15.43■□□□□ 0.06
SNHG1-217ENST00000541578 DMRT2Q9Y5R5 561 aa15.38■□□□□ 0.05
SNHG1-217ENST00000541578 CNKSR2Q8WXI2 1034 aa15.28■□□□□ 0.04
SNHG1-217ENST00000541578 NCBP3Q53F19 620 aaKnown RBP15.24■□□□□ 0.03
SNHG1-217ENST00000541578 KCNA4P22459 653 aa15.09■□□□□ 0.01
SNHG1-217ENST00000541578 RNF216Q9NWF9 866 aaPredicted RBP15.02■□□□□ -0
SNHG1-217ENST00000541578 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
SNHG1-217ENST00000541578 NPM3O75607 178 aaKnown RBP14.96□□□□□ -0.01
SNHG1-217ENST00000541578 DCAF8L1A6NGE4 600 aa14.76□□□□□ -0.05
SNHG1-217ENST00000541578 DNAJC5BQ9UF47 199 aa14.57□□□□□ -0.08
SNHG1-217ENST00000541578 SLC4A1APQ9BWU0 796 aaKnown RBP14.36□□□□□ -0.11
SNHG1-217ENST00000541578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.33□□□□□ -0.12
SNHG1-217ENST00000541578 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
SNHG1-217ENST00000541578 SLC4A2P04920 1241 aa14.17□□□□□ -0.14
SNHG1-217ENST00000541578 C1QBPQ07021 282 aaKnown RBP14.06□□□□□ -0.16
SNHG1-217ENST00000541578 U3KPZ7 1027 aaPredicted RBP14.03□□□□□ -0.16
SNHG1-217ENST00000541578 CACNB1Q02641 598 aaPredicted RBP14.01□□□□□ -0.17
SNHG1-217ENST00000541578 FOXD4L1Q9NU39 408 aa13.94□□□□□ -0.18
SNHG1-217ENST00000541578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-217ENST00000541578 ZBTB22O15209 634 aa13.85□□□□□ -0.19
SNHG1-217ENST00000541578 MYCNP04198 464 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-217ENST00000541578 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
SNHG1-217ENST00000541578 SAMD1Q6SPF0 538 aaPredicted RBP13.78□□□□□ -0.2
SNHG1-217ENST00000541578 APLP2Q06481 763 aa13.75□□□□□ -0.21
SNHG1-217ENST00000541578 EHMT2Q96KQ7 1210 aa13.74□□□□□ -0.21
SNHG1-217ENST00000541578 SPINK5Q9NQ38 1064 aaPredicted RBP13.69□□□□□ -0.22
SNHG1-217ENST00000541578 CAPN15O75808 1086 aa13.68□□□□□ -0.22
SNHG1-217ENST00000541578 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
SNHG1-217ENST00000541578 TRHP20396 242 aaPredicted RBP13.57□□□□□ -0.24
SNHG1-217ENST00000541578 ZNF219Q9P2Y4 722 aaPredicted RBP13.56□□□□□ -0.24
SNHG1-217ENST00000541578 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
SNHG1-217ENST00000541578 DSG3P32926 999 aa13.47□□□□□ -0.25
SNHG1-217ENST00000541578 ATF5Q9Y2D1 282 aaPredicted RBP13.47□□□□□ -0.25
SNHG1-217ENST00000541578 ABCB7O75027 752 aa13.38□□□□□ -0.27
SNHG1-217ENST00000541578 POLA2Q14181 598 aa13.31□□□□□ -0.28
SNHG1-217ENST00000541578 ZBTB12Q9Y330 459 aaPredicted RBP13.1□□□□□ -0.31
SNHG1-217ENST00000541578 FBLN2P98095 1184 aa12.97□□□□□ -0.33
SNHG1-217ENST00000541578 MKRN4PQ13434 485 aaPredicted RBP12.87□□□□□ -0.35
SNHG1-217ENST00000541578 RBM42Q9BTD8 480 aaKnown RBP12.87□□□□□ -0.35
SNHG1-217ENST00000541578 OSCARQ8IYS5 282 aa12.83□□□□□ -0.36
SNHG1-217ENST00000541578 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.37
SNHG1-217ENST00000541578 SPDYE6P0CI01 402 aa12.71□□□□□ -0.37
SNHG1-217ENST00000541578 SPDYE2Q495Y8 402 aa12.71□□□□□ -0.37
SNHG1-217ENST00000541578 AKT1S1Q96B36 256 aa12.67□□□□□ -0.38
SNHG1-217ENST00000541578 ZNF692Q9BU19 519 aaPredicted RBP12.65□□□□□ -0.38
SNHG1-217ENST00000541578 SSUH2Q9Y2M2 353 aa12.57□□□□□ -0.4
SNHG1-217ENST00000541578 REM2Q8IYK8 340 aaPredicted RBP12.54□□□□□ -0.4
SNHG1-217ENST00000541578 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
SNHG1-217ENST00000541578 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
SNHG1-217ENST00000541578 CHRDL2Q6WN34 429 aa12.39□□□□□ -0.43
SNHG1-217ENST00000541578 SPDYE1Q8NFV5 336 aaPredicted RBP12.39□□□□□ -0.43
SNHG1-217ENST00000541578 PITPNM1O00562 1244 aa12.38□□□□□ -0.43
SNHG1-217ENST00000541578 FKBP8Q14318 412 aa12.37□□□□□ -0.43
SNHG1-217ENST00000541578 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
SNHG1-217ENST00000541578 PROM2Q8N271 834 aa12.27□□□□□ -0.45
SNHG1-217ENST00000541578 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
SNHG1-217ENST00000541578 PRR29P0C7W0 189 aa12.21□□□□□ -0.45
SNHG1-217ENST00000541578 POTEHQ6S545 545 aa12.2□□□□□ -0.46
SNHG1-217ENST00000541578 FXR2P51116 673 aaKnown RBP eCLIP12.19□□□□□ -0.46
SNHG1-217ENST00000541578 PIP4P2Q8N4L2 257 aa12.19□□□□□ -0.46
SNHG1-217ENST00000541578 PRKAR2AP13861 404 aaKnown RBP12.08□□□□□ -0.48
SNHG1-217ENST00000541578 CHADLQ6NUI6 762 aa12.03□□□□□ -0.48
SNHG1-217ENST00000541578 FBXO3Q9UK99 471 aa12.01□□□□□ -0.49
SNHG1-217ENST00000541578 CREBZFQ9NS37 354 aa11.98□□□□□ -0.49
SNHG1-217ENST00000541578 MIER1Q8N108 512 aa11.93□□□□□ -0.5
SNHG1-217ENST00000541578 FARP1Q9Y4F1 1045 aaPredicted RBP11.92□□□□□ -0.5
SNHG1-217ENST00000541578 PLEKHG5O94827 1062 aa11.9□□□□□ -0.5
SNHG1-217ENST00000541578 PLCD3Q8N3E9 789 aa11.89□□□□□ -0.51
SNHG1-217ENST00000541578 HAX1O00165 279 aa11.88□□□□□ -0.51
SNHG1-217ENST00000541578 NPM1P06748 294 aaKnown RBP eCLIP11.82□□□□□ -0.52
SNHG1-217ENST00000541578 MNX1P50219 401 aaPredicted RBP11.82□□□□□ -0.52
SNHG1-217ENST00000541578 VASPP50552 380 aaPredicted RBP11.82□□□□□ -0.52
SNHG1-217ENST00000541578 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
SNHG1-217ENST00000541578 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
SNHG1-217ENST00000541578 CD44P16070 742 aaKnown RBP11.73□□□□□ -0.53
SNHG1-217ENST00000541578 EVX2Q03828 476 aa11.72□□□□□ -0.53
SNHG1-217ENST00000541578 KLHL34Q8N239 644 aa11.7□□□□□ -0.54
SNHG1-217ENST00000541578 PAK3O75914 559 aaPredicted RBP11.66□□□□□ -0.54
SNHG1-217ENST00000541578 IFNLR1Q8IU57 520 aaPredicted RBP11.64□□□□□ -0.55
SNHG1-217ENST00000541578 SP7Q8TDD2 431 aaPredicted RBP11.64□□□□□ -0.55
SNHG1-217ENST00000541578 ZRANB1Q9UGI0 708 aa11.64□□□□□ -0.55
SNHG1-217ENST00000541578 NUBP1P53384 320 aa11.61□□□□□ -0.55
SNHG1-217ENST00000541578 RASEFQ8IZ41 740 aa11.6□□□□□ -0.55
SNHG1-217ENST00000541578 TSPYL2Q9H2G4 693 aaPredicted RBP11.6□□□□□ -0.55
SNHG1-217ENST00000541578 ZNF579Q8NAF0 562 aaKnown RBP11.56□□□□□ -0.56
SNHG1-217ENST00000541578 SPOCK2Q92563 424 aa11.56□□□□□ -0.56
SNHG1-217ENST00000541578 FAM212AQ96EL1 285 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms