RNA–Protein interactions for RNA: ENST00000369409.9

PHGDH-202, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 1 (best) BASIC

Gene PHGDH, Length 1,882 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-202ENST00000369409 NISCHQ9Y2I1 1504 aa38.3■■■■□ 3.72
PHGDH-202ENST00000369409 CCDC180Q9P1Z9 1646 aa33.5■■■□□ 2.95
PHGDH-202ENST00000369409 ZCCHC6Q5VYS8 1495 aaKnown RBP32.19■■■□□ 2.74
PHGDH-202ENST00000369409 ABCC9O60706 1549 aa31.67■■■□□ 2.66
PHGDH-202ENST00000369409 DCAF1Q9Y4B6 1507 aa31.65■■■□□ 2.66
PHGDH-202ENST00000369409 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
PHGDH-202ENST00000369409 MYO15BQ96JP2 1530 aa31.27■■■□□ 2.6
PHGDH-202ENST00000369409 SHROOM4Q9ULL8 1493 aa31.24■■■□□ 2.59
PHGDH-202ENST00000369409 NACADO15069 1562 aa31.13■■■□□ 2.57
PHGDH-202ENST00000369409 RB1CC1Q8TDY2 1594 aa30.91■■■□□ 2.54
PHGDH-202ENST00000369409 SCRIBQ14160 1630 aa30.82■■■□□ 2.52
PHGDH-202ENST00000369409 UNC13AQ9UPW8 1703 aa30.42■■■□□ 2.46
PHGDH-202ENST00000369409 BICRAQ9NZM4 1560 aa30■■■□□ 2.39
PHGDH-202ENST00000369409 SUPT5HO00267 1087 aaKnown RBP29.98■■■□□ 2.39
PHGDH-202ENST00000369409 PABPN1Q86U42 306 aaKnown RBP eCLIP29.79■■■□□ 2.36
PHGDH-202ENST00000369409 CECR2Q9BXF3 1484 aa29.77■■■□□ 2.36
PHGDH-202ENST00000369409 RSF1Q96T23 1441 aaPredicted RBP29.67■■■□□ 2.34
PHGDH-202ENST00000369409 MROH2BQ7Z745 1585 aa29.62■■■□□ 2.33
PHGDH-202ENST00000369409 BAZ1AQ9NRL2 1556 aaPredicted RBP29.59■■■□□ 2.33
PHGDH-202ENST00000369409 SMARCA4P51532 1647 aa29.52■■■□□ 2.32
PHGDH-202ENST00000369409 WIZO95785 1651 aa29.43■■■□□ 2.3
PHGDH-202ENST00000369409 PEG3Q9GZU2 1588 aa29.11■■■□□ 2.25
PHGDH-202ENST00000369409 EIF4G1Q04637 1599 aaKnown RBP29.09■■■□□ 2.25
PHGDH-202ENST00000369409 TOP2AP11388 1531 aaKnown RBP29.08■■■□□ 2.25
PHGDH-202ENST00000369409 SMARCA2P51531 1590 aa28.98■■■□□ 2.23
PHGDH-202ENST00000369409 ATAD2BQ9ULI0 1458 aa28.97■■■□□ 2.23
PHGDH-202ENST00000369409 BAZ1BQ9UIG0 1483 aaKnown RBP28.83■■■□□ 2.21
PHGDH-202ENST00000369409 CCDC88BA6NC98 1476 aa28.74■■■□□ 2.19
PHGDH-202ENST00000369409 HMGXB3Q12766 1538 aa28.72■■■□□ 2.19
PHGDH-202ENST00000369409 NCAPD3P42695 1498 aa28.69■■■□□ 2.18
PHGDH-202ENST00000369409 CC2D2AQ9P2K1 1620 aa28.69■■■□□ 2.18
PHGDH-202ENST00000369409 CHIC1Q5VXU3 224 aa28.64■■■□□ 2.18
PHGDH-202ENST00000369409 ABCC8Q09428 1581 aa28.2■■■□□ 2.1
PHGDH-202ENST00000369409 TRIM41Q8WV44 630 aa28.16■■■□□ 2.1
PHGDH-202ENST00000369409 PRDM2Q13029 1718 aa28.1■■■□□ 2.09
PHGDH-202ENST00000369409 CFTRP13569 1480 aa28.07■■■□□ 2.08
PHGDH-202ENST00000369409 CADPSQ9ULU8 1353 aa27.95■■■□□ 2.06
PHGDH-202ENST00000369409 WRNQ14191 1432 aaPredicted RBP eCLIP27.94■■■□□ 2.06
PHGDH-202ENST00000369409 SYNJ1O43426 1573 aa27.91■■■□□ 2.06
PHGDH-202ENST00000369409 DNAJC5BQ9UF47 199 aa27.89■■■□□ 2.06
PHGDH-202ENST00000369409 NESP48681 1621 aa27.8■■■□□ 2.04
PHGDH-202ENST00000369409 LAMC3Q9Y6N6 1575 aa27.79■■■□□ 2.04
PHGDH-202ENST00000369409 BIVM-ERCC5R4GMW8 1640 aa27.78■■■□□ 2.04
PHGDH-202ENST00000369409 TOP2BQ02880 1626 aa27.78■■■□□ 2.04
PHGDH-202ENST00000369409 CUX1P39880 1505 aa27.7■■■□□ 2.03
PHGDH-202ENST00000369409 FANCD2Q9BXW9 1451 aa27.7■■■□□ 2.02
PHGDH-202ENST00000369409 FAM9AQ8IZU1 332 aaPredicted RBP27.69■■■□□ 2.02
PHGDH-202ENST00000369409 SOGA1O94964 1423 aa27.59■■■□□ 2.01
PHGDH-202ENST00000369409 KIF21AQ7Z4S6 1674 aa27.56■■■□□ 2
PHGDH-202ENST00000369409 LOC105371045A0A1W2PR82 267 aa27.55■■■□□ 2
PHGDH-202ENST00000369409 CEP164Q9UPV0 1460 aa27.54■■■□□ 2
PHGDH-202ENST00000369409 PDS5BQ9NTI5 1447 aa27.51■■□□□ 1.99
PHGDH-202ENST00000369409 RUSC2Q8N2Y8 1516 aa27.51■■□□□ 1.99
PHGDH-202ENST00000369409 EEA1Q15075 1411 aa27.49■■□□□ 1.99
PHGDH-202ENST00000369409 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
PHGDH-202ENST00000369409 TOPBP1Q92547 1522 aa27.4■■□□□ 1.98
PHGDH-202ENST00000369409 FGD5Q6ZNL6 1462 aa27.4■■□□□ 1.98
PHGDH-202ENST00000369409 URB2Q14146 1524 aaKnown RBP27.37■■□□□ 1.97
PHGDH-202ENST00000369409 EHMT2Q96KQ7 1210 aa27.34■■□□□ 1.97
PHGDH-202ENST00000369409 CSRNP3Q8WYN3 585 aa27.3■■□□□ 1.96
PHGDH-202ENST00000369409 POLA1P09884 1462 aaPredicted RBP27.27■■□□□ 1.96
PHGDH-202ENST00000369409 KIF27Q86VH2 1401 aa27.23■■□□□ 1.95
PHGDH-202ENST00000369409 KIF21BO75037 1637 aa27.23■■□□□ 1.95
PHGDH-202ENST00000369409 MRC2Q9UBG0 1479 aa27.22■■□□□ 1.95
PHGDH-202ENST00000369409 CUX2O14529 1486 aa27.2■■□□□ 1.95
PHGDH-202ENST00000369409 RAD54L2Q9Y4B4 1467 aa27.17■■□□□ 1.94
PHGDH-202ENST00000369409 WDR97A6NE52 1622 aa27.16■■□□□ 1.94
PHGDH-202ENST00000369409 GOLGA3Q08378 1498 aa27.16■■□□□ 1.94
PHGDH-202ENST00000369409 ERCC6Q03468 1493 aa27.16■■□□□ 1.94
PHGDH-202ENST00000369409 ABCA10Q8WWZ4 1543 aa27.13■■□□□ 1.93
PHGDH-202ENST00000369409 WDR62O43379 1518 aa27.1■■□□□ 1.93
PHGDH-202ENST00000369409 THOC2Q8NI27 1593 aaKnown RBP27.08■■□□□ 1.93
PHGDH-202ENST00000369409 RAPGEF2Q9Y4G8 1499 aa27.04■■□□□ 1.92
PHGDH-202ENST00000369409 PRXQ9BXM0 1461 aa27.04■■□□□ 1.92
PHGDH-202ENST00000369409 TARBP1Q13395 1621 aaKnown RBP27.03■■□□□ 1.92
PHGDH-202ENST00000369409 ERICH3Q5RHP9 1530 aa27.03■■□□□ 1.92
PHGDH-202ENST00000369409 TNIKQ9UKE5 1360 aa27.01■■□□□ 1.91
PHGDH-202ENST00000369409 ABCA5Q8WWZ7 1642 aa26.99■■□□□ 1.91
PHGDH-202ENST00000369409 UBTFP17480 764 aaKnown RBP26.98■■□□□ 1.91
PHGDH-202ENST00000369409 IGF1RP08069 1367 aa26.95■■□□□ 1.9
PHGDH-202ENST00000369409 CEP162Q5TB80 1403 aa26.92■■□□□ 1.9
PHGDH-202ENST00000369409 TDRD9Q8NDG6 1382 aaKnown RBP26.88■■□□□ 1.89
PHGDH-202ENST00000369409 CUL7Q14999 1698 aa26.87■■□□□ 1.89
PHGDH-202ENST00000369409 GAPVD1Q14C86 1478 aa26.86■■□□□ 1.89
PHGDH-202ENST00000369409 IFT140Q96RY7 1462 aa26.85■■□□□ 1.89
PHGDH-202ENST00000369409 PBRM1Q86U86 1689 aa26.84■■□□□ 1.89
PHGDH-202ENST00000369409 CARMIL1Q5VZK9 1371 aa26.83■■□□□ 1.89
PHGDH-202ENST00000369409 ZNF608Q9ULD9 1512 aaPredicted RBP26.74■■□□□ 1.87
PHGDH-202ENST00000369409 AQRO60306 1485 aaKnown RBP eCLIP26.73■■□□□ 1.871e-6■■□□□ 14.4
PHGDH-202ENST00000369409 EIF4G3O43432 1585 aaKnown RBP26.72■■□□□ 1.87
PHGDH-202ENST00000369409 CLIP1P30622 1438 aa26.7■■□□□ 1.87
PHGDH-202ENST00000369409 GRIN2BQ13224 1484 aa26.65■■□□□ 1.86
PHGDH-202ENST00000369409 ADAMTS12P58397 1594 aa26.64■■□□□ 1.86
PHGDH-202ENST00000369409 CTTNBP2Q8WZ74 1663 aa26.64■■□□□ 1.85
PHGDH-202ENST00000369409 RANGAP1P46060 587 aaPredicted RBP26.6■■□□□ 1.85
PHGDH-202ENST00000369409 FHAD1B1AJZ9 1412 aa26.55■■□□□ 1.84
PHGDH-202ENST00000369409 SNAPC4Q5SXM2 1469 aa26.52■■□□□ 1.84
PHGDH-202ENST00000369409 ARAP1Q96P48 1450 aa26.49■■□□□ 1.83
PHGDH-202ENST00000369409 ARHGAP35Q9NRY4 1499 aa26.47■■□□□ 1.83
PHGDH-202ENST00000369409 VPS8Q8N3P4 1428 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms