RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 NISCHQ9Y2I1 1504 aa28.26■■■□□ 2.12
PHGDH-233ENST00000642021 SHROOM4Q9ULL8 1493 aa24.36■■□□□ 1.49
PHGDH-233ENST00000642021 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
PHGDH-233ENST00000642021 ZCCHC6Q5VYS8 1495 aaKnown RBP23.92■■□□□ 1.42
PHGDH-233ENST00000642021 CCDC180Q9P1Z9 1646 aa23.81■■□□□ 1.4
PHGDH-233ENST00000642021 DCAF8L2P0C7V8 631 aa23.55■■□□□ 1.36
PHGDH-233ENST00000642021 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
PHGDH-233ENST00000642021 MYO15BQ96JP2 1530 aa23.31■■□□□ 1.32
PHGDH-233ENST00000642021 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
PHGDH-233ENST00000642021 HRCP23327 699 aa22.89■■□□□ 1.25
PHGDH-233ENST00000642021 PCGF6Q9BYE7 350 aa22.83■■□□□ 1.24
PHGDH-233ENST00000642021 LOC105371045A0A1W2PR82 267 aa22.75■■□□□ 1.23
PHGDH-233ENST00000642021 ABCC9O60706 1549 aa22.57■■□□□ 1.2
PHGDH-233ENST00000642021 PPARGC1BQ86YN6 1023 aaKnown RBP22.5■■□□□ 1.19
PHGDH-233ENST00000642021 RSF1Q96T23 1441 aaPredicted RBP22.49■■□□□ 1.19
PHGDH-233ENST00000642021 SCRIBQ14160 1630 aa22.48■■□□□ 1.19
PHGDH-233ENST00000642021 TRIM26Q12899 539 aaPredicted RBP22.28■■□□□ 1.16
PHGDH-233ENST00000642021 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
PHGDH-233ENST00000642021 RB1CC1Q8TDY2 1594 aa22.23■■□□□ 1.15
PHGDH-233ENST00000642021 FAM9AQ8IZU1 332 aaPredicted RBP22.16■■□□□ 1.14
PHGDH-233ENST00000642021 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
PHGDH-233ENST00000642021 NACADO15069 1562 aa22.04■■□□□ 1.12
PHGDH-233ENST00000642021 MROH2BQ7Z745 1585 aa22.03■■□□□ 1.12
PHGDH-233ENST00000642021 EHMT2Q96KQ7 1210 aa22.02■■□□□ 1.12
PHGDH-233ENST00000642021 WIZO95785 1651 aa21.89■■□□□ 1.09
PHGDH-233ENST00000642021 ZEB1P37275 1124 aaPredicted RBP21.79■■□□□ 1.08
PHGDH-233ENST00000642021 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
PHGDH-233ENST00000642021 EIF4G1Q04637 1599 aaKnown RBP21.62■■□□□ 1.05
PHGDH-233ENST00000642021 PELP1Q8IZL8 1130 aaKnown RBP21.54■■□□□ 1.04
PHGDH-233ENST00000642021 ABCC8Q09428 1581 aa21.5■■□□□ 1.03
PHGDH-233ENST00000642021 CCDC88BA6NC98 1476 aa21.5■■□□□ 1.03
PHGDH-233ENST00000642021 TOP2AP11388 1531 aaKnown RBP21.49■■□□□ 1.03
PHGDH-233ENST00000642021 SMARCA4P51532 1647 aa21.46■■□□□ 1.03
PHGDH-233ENST00000642021 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.44■■□□□ 1.02
PHGDH-233ENST00000642021 SMARCA2P51531 1590 aa21.42■■□□□ 1.02
PHGDH-233ENST00000642021 SOGA1O94964 1423 aa21.37■■□□□ 1.01
PHGDH-233ENST00000642021 UNC13AQ9UPW8 1703 aa21.33■■□□□ 1.01
PHGDH-233ENST00000642021 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1
PHGDH-233ENST00000642021 TTBK1Q5TCY1 1321 aaPredicted RBP21.33■■□□□ 1
PHGDH-233ENST00000642021 CEP162Q5TB80 1403 aa21.29■■□□□ 1
PHGDH-233ENST00000642021 WRNQ14191 1432 aaPredicted RBP eCLIP21.28■■□□□ 1
PHGDH-233ENST00000642021 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 1
PHGDH-233ENST00000642021 RUSC2Q8N2Y8 1516 aa21.28■■□□□ 1
PHGDH-233ENST00000642021 CSRNP3Q8WYN3 585 aa21.25■□□□□ 0.99
PHGDH-233ENST00000642021 TNIKQ9UKE5 1360 aa21.24■□□□□ 0.99
PHGDH-233ENST00000642021 SCAF1Q9H7N4 1312 aaKnown RBP21.23■□□□□ 0.99
PHGDH-233ENST00000642021 UBTFP17480 764 aaKnown RBP21.19■□□□□ 0.98
PHGDH-233ENST00000642021 EEA1Q15075 1411 aa21.14■□□□□ 0.98
PHGDH-233ENST00000642021 BICRAQ9NZM4 1560 aa21.13■□□□□ 0.97
PHGDH-233ENST00000642021 MYT1Q01538 1121 aa21.1■□□□□ 0.97
PHGDH-233ENST00000642021 GOLGA3Q08378 1498 aa21.05■□□□□ 0.96
PHGDH-233ENST00000642021 PEG3Q9GZU2 1588 aa21.01■□□□□ 0.95
PHGDH-233ENST00000642021 DIEXFQ68CQ4 756 aaKnown RBP21.01■□□□□ 0.95
PHGDH-233ENST00000642021 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
PHGDH-233ENST00000642021 NEUROD1Q13562 356 aa20.95■□□□□ 0.94
PHGDH-233ENST00000642021 ACIN1Q9UKV3 1341 aaKnown RBP20.93■□□□□ 0.94
PHGDH-233ENST00000642021 ATAD2BQ9ULI0 1458 aa20.93■□□□□ 0.94
PHGDH-233ENST00000642021 CEP164Q9UPV0 1460 aa20.91■□□□□ 0.94
PHGDH-233ENST00000642021 CLIP1P30622 1438 aa20.86■□□□□ 0.93
PHGDH-233ENST00000642021 HNRNPUL2Q1KMD3 747 aaKnown RBP20.85■□□□□ 0.93
PHGDH-233ENST00000642021 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
PHGDH-233ENST00000642021 KIF21BO75037 1637 aa20.84■□□□□ 0.93
PHGDH-233ENST00000642021 RAPGEF2Q9Y4G8 1499 aa20.81■□□□□ 0.92
PHGDH-233ENST00000642021 ZNF316A6NFI3 1004 aaPredicted RBP20.8■□□□□ 0.92
PHGDH-233ENST00000642021 RANGAP1P46060 587 aaPredicted RBP20.8■□□□□ 0.92
PHGDH-233ENST00000642021 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
PHGDH-233ENST00000642021 GTF3C3Q9Y5Q9 886 aa20.72■□□□□ 0.91
PHGDH-233ENST00000642021 CENPBP07199 599 aaPredicted RBP20.71■□□□□ 0.91
PHGDH-233ENST00000642021 APLP2Q06481 763 aa20.69■□□□□ 0.9
PHGDH-233ENST00000642021 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
PHGDH-233ENST00000642021 MIER1Q8N108 512 aa20.58■□□□□ 0.88
PHGDH-233ENST00000642021 PRXQ9BXM0 1461 aa20.56■□□□□ 0.88
PHGDH-233ENST00000642021 YTHDC1Q96MU7 727 aaKnown RBP20.56■□□□□ 0.88
PHGDH-233ENST00000642021 BIVM-ERCC5R4GMW8 1640 aa20.54■□□□□ 0.88
PHGDH-233ENST00000642021 KANK4Q5T7N3 995 aaPredicted RBP20.52■□□□□ 0.88
PHGDH-233ENST00000642021 ARAP1Q96P48 1450 aa20.51■□□□□ 0.87
PHGDH-233ENST00000642021 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
PHGDH-233ENST00000642021 CUX1P39880 1505 aa20.47■□□□□ 0.87
PHGDH-233ENST00000642021 NCAPD3P42695 1498 aa20.47■□□□□ 0.87
PHGDH-233ENST00000642021 DHX57Q6P158 1386 aaKnown RBP20.42■□□□□ 0.86
PHGDH-233ENST00000642021 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
PHGDH-233ENST00000642021 KIF27Q86VH2 1401 aa20.4■□□□□ 0.86
PHGDH-233ENST00000642021 CFTRP13569 1480 aa20.36■□□□□ 0.85
PHGDH-233ENST00000642021 CLSPNQ9HAW4 1339 aa20.35■□□□□ 0.85
PHGDH-233ENST00000642021 RRBP1Q9P2E9 1410 aaKnown RBP20.32■□□□□ 0.84
PHGDH-233ENST00000642021 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
PHGDH-233ENST00000642021 CCNB3Q8WWL7 1395 aa20.25■□□□□ 0.83
PHGDH-233ENST00000642021 ITGAEP38570 1179 aa20.24■□□□□ 0.83
PHGDH-233ENST00000642021 IGF1RP08069 1367 aa20.24■□□□□ 0.83
PHGDH-233ENST00000642021 CUX2O14529 1486 aa20.2■□□□□ 0.82
PHGDH-233ENST00000642021 CARMIL1Q5VZK9 1371 aa20.13■□□□□ 0.81
PHGDH-233ENST00000642021 CADPSQ9ULU8 1353 aa20.12■□□□□ 0.81
PHGDH-233ENST00000642021 RAB3GAP2Q9H2M9 1393 aa20.11■□□□□ 0.81
PHGDH-233ENST00000642021 FGD5Q6ZNL6 1462 aa20.08■□□□□ 0.81
PHGDH-233ENST00000642021 TIAM1Q13009 1591 aa20.06■□□□□ 0.8
PHGDH-233ENST00000642021 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
PHGDH-233ENST00000642021 PHLDB1Q86UU1 1377 aa20.04■□□□□ 0.8
PHGDH-233ENST00000642021 MAPKBP1O60336 1514 aa20.03■□□□□ 0.8
PHGDH-233ENST00000642021 LRRC9Q6ZRR7 1453 aa20.02■□□□□ 0.8
PHGDH-233ENST00000642021 MAP3K1Q13233 1512 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms