RNA–Protein interactions for RNA: ENST00000641947.1

PHGDH-232, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,774 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-232ENST00000641947 NISCHQ9Y2I1 1504 aa40.33■■■■■ 4.05
PHGDH-232ENST00000641947 CCDC180Q9P1Z9 1646 aa35.25■■■■□ 3.23
PHGDH-232ENST00000641947 ZCCHC6Q5VYS8 1495 aaKnown RBP33.88■■■■□ 3.01
PHGDH-232ENST00000641947 ABCC9O60706 1549 aa33.37■■■□□ 2.93
PHGDH-232ENST00000641947 DCAF1Q9Y4B6 1507 aa33.31■■■□□ 2.92
PHGDH-232ENST00000641947 DCAF8L2P0C7V8 631 aa33.21■■■□□ 2.91
PHGDH-232ENST00000641947 MYO15BQ96JP2 1530 aa32.92■■■□□ 2.86
PHGDH-232ENST00000641947 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
PHGDH-232ENST00000641947 NACADO15069 1562 aa32.77■■■□□ 2.84
PHGDH-232ENST00000641947 RB1CC1Q8TDY2 1594 aa32.52■■■□□ 2.8
PHGDH-232ENST00000641947 SCRIBQ14160 1630 aa32.44■■■□□ 2.78
PHGDH-232ENST00000641947 UNC13AQ9UPW8 1703 aa32.09■■■□□ 2.73
PHGDH-232ENST00000641947 BICRAQ9NZM4 1560 aa31.66■■■□□ 2.66
PHGDH-232ENST00000641947 SUPT5HO00267 1087 aaKnown RBP31.48■■■□□ 2.63
PHGDH-232ENST00000641947 PABPN1Q86U42 306 aaKnown RBP eCLIP31.41■■■□□ 2.62
PHGDH-232ENST00000641947 CECR2Q9BXF3 1484 aa31.39■■■□□ 2.62
PHGDH-232ENST00000641947 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
PHGDH-232ENST00000641947 MROH2BQ7Z745 1585 aa31.2■■■□□ 2.59
PHGDH-232ENST00000641947 BAZ1AQ9NRL2 1556 aaPredicted RBP31.12■■■□□ 2.57
PHGDH-232ENST00000641947 SMARCA4P51532 1647 aa31.07■■■□□ 2.56
PHGDH-232ENST00000641947 WIZO95785 1651 aa30.99■■■□□ 2.55
PHGDH-232ENST00000641947 PEG3Q9GZU2 1588 aa30.67■■■□□ 2.5
PHGDH-232ENST00000641947 EIF4G1Q04637 1599 aaKnown RBP30.66■■■□□ 2.5
PHGDH-232ENST00000641947 TOP2AP11388 1531 aaKnown RBP30.59■■■□□ 2.49
PHGDH-232ENST00000641947 ATAD2BQ9ULI0 1458 aa30.52■■■□□ 2.48
PHGDH-232ENST00000641947 SMARCA2P51531 1590 aa30.47■■■□□ 2.47
PHGDH-232ENST00000641947 BAZ1BQ9UIG0 1483 aaKnown RBP30.32■■■□□ 2.44
PHGDH-232ENST00000641947 CCDC88BA6NC98 1476 aa30.26■■■□□ 2.44
PHGDH-232ENST00000641947 CC2D2AQ9P2K1 1620 aa30.24■■■□□ 2.43
PHGDH-232ENST00000641947 NCAPD3P42695 1498 aa30.23■■■□□ 2.43
PHGDH-232ENST00000641947 HMGXB3Q12766 1538 aa30.23■■■□□ 2.43
PHGDH-232ENST00000641947 CHIC1Q5VXU3 224 aa30.11■■■□□ 2.41
PHGDH-232ENST00000641947 ABCC8Q09428 1581 aa29.68■■■□□ 2.34
PHGDH-232ENST00000641947 CFTRP13569 1480 aa29.56■■■□□ 2.32
PHGDH-232ENST00000641947 PRDM2Q13029 1718 aa29.56■■■□□ 2.32
PHGDH-232ENST00000641947 TRIM41Q8WV44 630 aa29.55■■■□□ 2.32
PHGDH-232ENST00000641947 DNAJC5BQ9UF47 199 aa29.54■■■□□ 2.32
PHGDH-232ENST00000641947 CADPSQ9ULU8 1353 aa29.43■■■□□ 2.3
PHGDH-232ENST00000641947 SYNJ1O43426 1573 aa29.38■■■□□ 2.29
PHGDH-232ENST00000641947 WRNQ14191 1432 aaPredicted RBP eCLIP29.37■■■□□ 2.29
PHGDH-232ENST00000641947 NESP48681 1621 aa29.33■■■□□ 2.29
PHGDH-232ENST00000641947 LAMC3Q9Y6N6 1575 aa29.25■■■□□ 2.27
PHGDH-232ENST00000641947 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
PHGDH-232ENST00000641947 TOP2BQ02880 1626 aa29.22■■■□□ 2.27
PHGDH-232ENST00000641947 CUX1P39880 1505 aa29.18■■■□□ 2.26
PHGDH-232ENST00000641947 FANCD2Q9BXW9 1451 aa29.15■■■□□ 2.26
PHGDH-232ENST00000641947 FAM9AQ8IZU1 332 aaPredicted RBP29.08■■■□□ 2.25
PHGDH-232ENST00000641947 KIF21AQ7Z4S6 1674 aa29.04■■■□□ 2.24
PHGDH-232ENST00000641947 SOGA1O94964 1423 aa29.04■■■□□ 2.24
PHGDH-232ENST00000641947 LOC105371045A0A1W2PR82 267 aa28.99■■■□□ 2.23
PHGDH-232ENST00000641947 RUSC2Q8N2Y8 1516 aa28.99■■■□□ 2.23
PHGDH-232ENST00000641947 CEP164Q9UPV0 1460 aa28.96■■■□□ 2.23
PHGDH-232ENST00000641947 PDS5BQ9NTI5 1447 aa28.93■■■□□ 2.22
PHGDH-232ENST00000641947 DNMBPQ6XZF7 1577 aa28.91■■■□□ 2.22
PHGDH-232ENST00000641947 TOPBP1Q92547 1522 aa28.86■■■□□ 2.21
PHGDH-232ENST00000641947 URB2Q14146 1524 aaKnown RBP28.85■■■□□ 2.21
PHGDH-232ENST00000641947 EEA1Q15075 1411 aa28.84■■■□□ 2.21
PHGDH-232ENST00000641947 FGD5Q6ZNL6 1462 aa28.84■■■□□ 2.21
PHGDH-232ENST00000641947 POLA1P09884 1462 aaPredicted RBP28.71■■■□□ 2.19
PHGDH-232ENST00000641947 EHMT2Q96KQ7 1210 aa28.71■■■□□ 2.19
PHGDH-232ENST00000641947 CSRNP3Q8WYN3 585 aa28.7■■■□□ 2.18
PHGDH-232ENST00000641947 MRC2Q9UBG0 1479 aa28.64■■■□□ 2.18
PHGDH-232ENST00000641947 RAD54L2Q9Y4B4 1467 aa28.63■■■□□ 2.17
PHGDH-232ENST00000641947 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
PHGDH-232ENST00000641947 KIF21BO75037 1637 aa28.6■■■□□ 2.17
PHGDH-232ENST00000641947 CUX2O14529 1486 aa28.6■■■□□ 2.17
PHGDH-232ENST00000641947 KIF27Q86VH2 1401 aa28.59■■■□□ 2.17
PHGDH-232ENST00000641947 ABCA10Q8WWZ4 1543 aa28.56■■■□□ 2.16
PHGDH-232ENST00000641947 THOC2Q8NI27 1593 aaKnown RBP28.55■■■□□ 2.16
PHGDH-232ENST00000641947 WDR62O43379 1518 aa28.54■■■□□ 2.16
PHGDH-232ENST00000641947 ERCC6Q03468 1493 aa28.54■■■□□ 2.16
PHGDH-232ENST00000641947 GOLGA3Q08378 1498 aa28.5■■■□□ 2.15
PHGDH-232ENST00000641947 TARBP1Q13395 1621 aaKnown RBP28.49■■■□□ 2.15
PHGDH-232ENST00000641947 PRXQ9BXM0 1461 aa28.46■■■□□ 2.15
PHGDH-232ENST00000641947 RAPGEF2Q9Y4G8 1499 aa28.46■■■□□ 2.15
PHGDH-232ENST00000641947 ABCA5Q8WWZ7 1642 aa28.42■■■□□ 2.14
PHGDH-232ENST00000641947 ERICH3Q5RHP9 1530 aa28.39■■■□□ 2.14
PHGDH-232ENST00000641947 IGF1RP08069 1367 aa28.39■■■□□ 2.13
PHGDH-232ENST00000641947 TNIKQ9UKE5 1360 aa28.37■■■□□ 2.13
PHGDH-232ENST00000641947 TDRD9Q8NDG6 1382 aaKnown RBP28.31■■■□□ 2.12
PHGDH-232ENST00000641947 UBTFP17480 764 aaKnown RBP28.3■■■□□ 2.12
PHGDH-232ENST00000641947 CEP162Q5TB80 1403 aa28.27■■■□□ 2.12
PHGDH-232ENST00000641947 GAPVD1Q14C86 1478 aa28.26■■■□□ 2.11
PHGDH-232ENST00000641947 IFT140Q96RY7 1462 aa28.25■■■□□ 2.11
PHGDH-232ENST00000641947 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
PHGDH-232ENST00000641947 CUL7Q14999 1698 aa28.24■■■□□ 2.11
PHGDH-232ENST00000641947 CARMIL1Q5VZK9 1371 aa28.21■■■□□ 2.11
PHGDH-232ENST00000641947 ZNF608Q9ULD9 1512 aaPredicted RBP28.2■■■□□ 2.11
PHGDH-232ENST00000641947 AQRO60306 1485 aaKnown RBP eCLIP28.17■■■□□ 2.11e-6■■□□□ 14.4
PHGDH-232ENST00000641947 EIF4G3O43432 1585 aaKnown RBP28.13■■■□□ 2.09
PHGDH-232ENST00000641947 ADAMTS12P58397 1594 aa28.04■■■□□ 2.08
PHGDH-232ENST00000641947 CLIP1P30622 1438 aa28.03■■■□□ 2.08
PHGDH-232ENST00000641947 GRIN2BQ13224 1484 aa28.03■■■□□ 2.08
PHGDH-232ENST00000641947 CTTNBP2Q8WZ74 1663 aa27.99■■■□□ 2.07
PHGDH-232ENST00000641947 RANGAP1P46060 587 aaPredicted RBP27.94■■■□□ 2.06
PHGDH-232ENST00000641947 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
PHGDH-232ENST00000641947 SNAPC4Q5SXM2 1469 aa27.92■■■□□ 2.06
PHGDH-232ENST00000641947 ARAP1Q96P48 1450 aa27.87■■■□□ 2.05
PHGDH-232ENST00000641947 ARHGAP35Q9NRY4 1499 aa27.85■■■□□ 2.05
PHGDH-232ENST00000641947 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms