RNA–Protein interactions for RNA: ENST00000540865.5

SNHG1-214, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 784 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-214ENST00000540865 AEBP2Q6ZN18 517 aaPredicted RBP17.68■□□□□ 0.42
SNHG1-214ENST00000540865 CHIC1Q5VXU3 224 aa16.47■□□□□ 0.23
SNHG1-214ENST00000540865 SENP3Q9H4L4 574 aaPredicted RBP15.08■□□□□ 0
SNHG1-214ENST00000540865 PHF23Q9BUL5 403 aaPredicted RBP14.84□□□□□ -0.03
SNHG1-214ENST00000540865 FOXD1Q16676 465 aa14.13□□□□□ -0.15
SNHG1-214ENST00000540865 POTEDQ86YR6 584 aa13.58□□□□□ -0.24
SNHG1-214ENST00000540865 MSH5O43196 834 aa13.3□□□□□ -0.28
SNHG1-214ENST00000540865 PIAS4Q8N2W9 510 aaPredicted RBP13.14□□□□□ -0.31
SNHG1-214ENST00000540865 PLPPR3Q6T4P5 718 aa12.97□□□□□ -0.33
SNHG1-214ENST00000540865 PPP6R1Q9UPN7 881 aa12.97□□□□□ -0.33
SNHG1-214ENST00000540865 ADRA2BP18089 450 aa12.91□□□□□ -0.34
SNHG1-214ENST00000540865 MAPK8IP2Q13387 824 aaPredicted RBP11.96□□□□□ -0.49
SNHG1-214ENST00000540865 DMRT2Q9Y5R5 561 aa11.92□□□□□ -0.5
SNHG1-214ENST00000540865 NISCHQ9Y2I1 1504 aa11.81□□□□□ -0.52
SNHG1-214ENST00000540865 SCAF1Q9H7N4 1312 aaKnown RBP11.73□□□□□ -0.53
SNHG1-214ENST00000540865 CACNB1Q02641 598 aaPredicted RBP11.64□□□□□ -0.55
SNHG1-214ENST00000540865 DCAF8L1A6NGE4 600 aa11.5□□□□□ -0.57
SNHG1-214ENST00000540865 PPP4R3CPQ6ZMV5 832 aa11.34□□□□□ -0.59
SNHG1-214ENST00000540865 RNF39Q9H2S5 420 aa11.34□□□□□ -0.59
SNHG1-214ENST00000540865 HOXD11P31277 338 aaPredicted RBP11.33□□□□□ -0.6
SNHG1-214ENST00000540865 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
SNHG1-214ENST00000540865 RNF216Q9NWF9 866 aaPredicted RBP11.16□□□□□ -0.62
SNHG1-214ENST00000540865 C1QBPQ07021 282 aaKnown RBP11.13□□□□□ -0.63
SNHG1-214ENST00000540865 ABCC9O60706 1549 aa11□□□□□ -0.65
SNHG1-214ENST00000540865 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
SNHG1-214ENST00000540865 KCNA4P22459 653 aa10.93□□□□□ -0.66
SNHG1-214ENST00000540865 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.83□□□□□ -0.68
SNHG1-214ENST00000540865 NCBP3Q53F19 620 aaKnown RBP10.77□□□□□ -0.69
SNHG1-214ENST00000540865 NPM3O75607 178 aaKnown RBP10.68□□□□□ -0.7
SNHG1-214ENST00000540865 CCDC180Q9P1Z9 1646 aa10.66□□□□□ -0.7
SNHG1-214ENST00000540865 U3KPZ7 1027 aaPredicted RBP10.58□□□□□ -0.72
SNHG1-214ENST00000540865 POTEHQ6S545 545 aa10.57□□□□□ -0.72
SNHG1-214ENST00000540865 SPINK5Q9NQ38 1064 aaPredicted RBP10.54□□□□□ -0.72
SNHG1-214ENST00000540865 CAPN15O75808 1086 aa10.52□□□□□ -0.73
SNHG1-214ENST00000540865 DSG3P32926 999 aa10.52□□□□□ -0.73
SNHG1-214ENST00000540865 SLC4A1APQ9BWU0 796 aaKnown RBP10.39□□□□□ -0.75
SNHG1-214ENST00000540865 RB1CC1Q8TDY2 1594 aa10.34□□□□□ -0.75
SNHG1-214ENST00000540865 ABCB7O75027 752 aa10.29□□□□□ -0.76
SNHG1-214ENST00000540865 TRHP20396 242 aaPredicted RBP10.28□□□□□ -0.76
SNHG1-214ENST00000540865 SLC4A2P04920 1241 aa10.27□□□□□ -0.77
SNHG1-214ENST00000540865 EHMT2Q96KQ7 1210 aa10.25□□□□□ -0.77
SNHG1-214ENST00000540865 PABPN1Q86U42 306 aaKnown RBP eCLIP10.23□□□□□ -0.77
SNHG1-214ENST00000540865 ZNF219Q9P2Y4 722 aaPredicted RBP10.21□□□□□ -0.77
SNHG1-214ENST00000540865 NACADO15069 1562 aa10.21□□□□□ -0.78
SNHG1-214ENST00000540865 APLP2Q06481 763 aa10.17□□□□□ -0.78
SNHG1-214ENST00000540865 DCAF8L2P0C7V8 631 aa10.12□□□□□ -0.79
SNHG1-214ENST00000540865 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.1□□□□□ -0.79
SNHG1-214ENST00000540865 HNRNPUL2Q1KMD3 747 aaKnown RBP10.1□□□□□ -0.79
SNHG1-214ENST00000540865 ZBTB22O15209 634 aa10.09□□□□□ -0.79
SNHG1-214ENST00000540865 CSRNP3Q8WYN3 585 aa10.06□□□□□ -0.8
SNHG1-214ENST00000540865 SAMD1Q6SPF0 538 aaPredicted RBP10.05□□□□□ -0.8
SNHG1-214ENST00000540865 BICRAQ9NZM4 1560 aa10.02□□□□□ -0.81
SNHG1-214ENST00000540865 RBM42Q9BTD8 480 aaKnown RBP10.02□□□□□ -0.81
SNHG1-214ENST00000540865 DNAJC5Q9H3Z4 198 aa10.02□□□□□ -0.81
SNHG1-214ENST00000540865 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
SNHG1-214ENST00000540865 FOXD4L1Q9NU39 408 aa9.98□□□□□ -0.81
SNHG1-214ENST00000540865 CECR2Q9BXF3 1484 aa9.97□□□□□ -0.81
SNHG1-214ENST00000540865 CHRDL2Q6WN34 429 aa9.96□□□□□ -0.82
SNHG1-214ENST00000540865 UNC13AQ9UPW8 1703 aa9.96□□□□□ -0.82
SNHG1-214ENST00000540865 SHROOM4Q9ULL8 1493 aa9.94□□□□□ -0.82
SNHG1-214ENST00000540865 POLA2Q14181 598 aa9.91□□□□□ -0.82
SNHG1-214ENST00000540865 CC2D2AQ9P2K1 1620 aa9.89□□□□□ -0.83
SNHG1-214ENST00000540865 MYCNP04198 464 aaPredicted RBP9.86□□□□□ -0.83
SNHG1-214ENST00000540865 EIF4G1Q04637 1599 aaKnown RBP9.82□□□□□ -0.84
SNHG1-214ENST00000540865 SP7Q8TDD2 431 aaPredicted RBP9.76□□□□□ -0.85
SNHG1-214ENST00000540865 DCAF1Q9Y4B6 1507 aa9.76□□□□□ -0.85
SNHG1-214ENST00000540865 ZCCHC6Q5VYS8 1495 aaKnown RBP9.72□□□□□ -0.85
SNHG1-214ENST00000540865 AKT1S1Q96B36 256 aa9.71□□□□□ -0.86
SNHG1-214ENST00000540865 ATF5Q9Y2D1 282 aaPredicted RBP9.71□□□□□ -0.86
SNHG1-214ENST00000540865 SCRIBQ14160 1630 aa9.7□□□□□ -0.86
SNHG1-214ENST00000540865 OSCARQ8IYS5 282 aa9.67□□□□□ -0.86
SNHG1-214ENST00000540865 PIP4P2Q8N4L2 257 aa9.67□□□□□ -0.86
SNHG1-214ENST00000540865 REM2Q8IYK8 340 aaPredicted RBP9.65□□□□□ -0.86
SNHG1-214ENST00000540865 ZBTB12Q9Y330 459 aaPredicted RBP9.65□□□□□ -0.86
SNHG1-214ENST00000540865 CUX2O14529 1486 aa9.64□□□□□ -0.87
SNHG1-214ENST00000540865 PITPNM1O00562 1244 aa9.59□□□□□ -0.87
SNHG1-214ENST00000540865 ATXN8OSP0DMR3 200 aa9.58□□□□□ -0.88
SNHG1-214ENST00000540865 HAX1O00165 279 aa9.56□□□□□ -0.88
SNHG1-214ENST00000540865 ERCC6Q03468 1493 aa9.53□□□□□ -0.88
SNHG1-214ENST00000540865 FXR2P51116 673 aaKnown RBP eCLIP9.52□□□□□ -0.89
SNHG1-214ENST00000540865 NCAPD3P42695 1498 aa9.47□□□□□ -0.89
SNHG1-214ENST00000540865 EVX2Q03828 476 aa9.44□□□□□ -0.9
SNHG1-214ENST00000540865 TRIM41Q8WV44 630 aa9.41□□□□□ -0.9
SNHG1-214ENST00000540865 ATAD2BQ9ULI0 1458 aa9.38□□□□□ -0.91
SNHG1-214ENST00000540865 NESP48681 1621 aa9.35□□□□□ -0.91
SNHG1-214ENST00000540865 SPDYE2BA6NHP3 402 aa9.34□□□□□ -0.91
SNHG1-214ENST00000540865 SPDYE6P0CI01 402 aa9.34□□□□□ -0.91
SNHG1-214ENST00000540865 SPDYE2Q495Y8 402 aa9.34□□□□□ -0.91
SNHG1-214ENST00000540865 HMGXB3Q12766 1538 aa9.32□□□□□ -0.92
SNHG1-214ENST00000540865 PRKAR2AP13861 404 aaKnown RBP9.32□□□□□ -0.92
SNHG1-214ENST00000540865 SMARCA2P51531 1590 aa9.31□□□□□ -0.92
SNHG1-214ENST00000540865 FBLN2P98095 1184 aa9.3□□□□□ -0.92
SNHG1-214ENST00000540865 CLEC11AQ9Y240 323 aa9.3□□□□□ -0.92
SNHG1-214ENST00000540865 THOC2Q8NI27 1593 aaKnown RBP9.29□□□□□ -0.92
SNHG1-214ENST00000540865 PDS5BQ9NTI5 1447 aa9.27□□□□□ -0.93
SNHG1-214ENST00000540865 SPDYE1Q8NFV5 336 aaPredicted RBP9.25□□□□□ -0.93
SNHG1-214ENST00000540865 BAZ1BQ9UIG0 1483 aaKnown RBP9.25□□□□□ -0.93
SNHG1-214ENST00000540865 LAMC3Q9Y6N6 1575 aa9.24□□□□□ -0.93
SNHG1-214ENST00000540865 C19orf67A6NJJ6 358 aa9.23□□□□□ -0.93
SNHG1-214ENST00000540865 MKRN4PQ13434 485 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms