RNA–Protein interactions for RNA: ENST00000641927.1

PHGDH-230, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,678 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-230ENST00000641927 NISCHQ9Y2I1 1504 aa40.83■■■■■ 4.13
PHGDH-230ENST00000641927 CCDC180Q9P1Z9 1646 aa35.92■■■■□ 3.34
PHGDH-230ENST00000641927 ABCC9O60706 1549 aa34.56■■■■□ 3.12
PHGDH-230ENST00000641927 ZCCHC6Q5VYS8 1495 aaKnown RBP34.16■■■■□ 3.06
PHGDH-230ENST00000641927 DCAF8L2P0C7V8 631 aa34.03■■■■□ 3.04
PHGDH-230ENST00000641927 DCAF1Q9Y4B6 1507 aa33.74■■■□□ 2.99
PHGDH-230ENST00000641927 NACADO15069 1562 aa33.61■■■□□ 2.97
PHGDH-230ENST00000641927 MYO15BQ96JP2 1530 aa33.58■■■□□ 2.97
PHGDH-230ENST00000641927 RB1CC1Q8TDY2 1594 aa33.5■■■□□ 2.95
PHGDH-230ENST00000641927 SCRIBQ14160 1630 aa32.97■■■□□ 2.87
PHGDH-230ENST00000641927 SHROOM4Q9ULL8 1493 aa32.91■■■□□ 2.86
PHGDH-230ENST00000641927 UNC13AQ9UPW8 1703 aa32.74■■■□□ 2.83
PHGDH-230ENST00000641927 PABPN1Q86U42 306 aaKnown RBP eCLIP32.48■■■□□ 2.79
PHGDH-230ENST00000641927 BICRAQ9NZM4 1560 aa32.43■■■□□ 2.78
PHGDH-230ENST00000641927 CECR2Q9BXF3 1484 aa31.77■■■□□ 2.68
PHGDH-230ENST00000641927 BAZ1AQ9NRL2 1556 aaPredicted RBP31.61■■■□□ 2.65
PHGDH-230ENST00000641927 EIF4G1Q04637 1599 aaKnown RBP31.55■■■□□ 2.64
PHGDH-230ENST00000641927 SMARCA4P51532 1647 aa31.53■■■□□ 2.64
PHGDH-230ENST00000641927 MROH2BQ7Z745 1585 aa31.52■■■□□ 2.64
PHGDH-230ENST00000641927 RSF1Q96T23 1441 aaPredicted RBP31.42■■■□□ 2.62
PHGDH-230ENST00000641927 SUPT5HO00267 1087 aaKnown RBP31.36■■■□□ 2.61
PHGDH-230ENST00000641927 CC2D2AQ9P2K1 1620 aa31.25■■■□□ 2.59
PHGDH-230ENST00000641927 WIZO95785 1651 aa31.24■■■□□ 2.59
PHGDH-230ENST00000641927 ATAD2BQ9ULI0 1458 aa31.17■■■□□ 2.58
PHGDH-230ENST00000641927 SMARCA2P51531 1590 aa31.16■■■□□ 2.58
PHGDH-230ENST00000641927 PEG3Q9GZU2 1588 aa31.15■■■□□ 2.58
PHGDH-230ENST00000641927 DNAJC5BQ9UF47 199 aa31.02■■■□□ 2.56
PHGDH-230ENST00000641927 NCAPD3P42695 1498 aa31■■■□□ 2.55
PHGDH-230ENST00000641927 BAZ1BQ9UIG0 1483 aaKnown RBP31■■■□□ 2.55
PHGDH-230ENST00000641927 HMGXB3Q12766 1538 aa30.92■■■□□ 2.54
PHGDH-230ENST00000641927 TOP2AP11388 1531 aaKnown RBP30.9■■■□□ 2.54
PHGDH-230ENST00000641927 CCDC88BA6NC98 1476 aa30.57■■■□□ 2.48
PHGDH-230ENST00000641927 CADPSQ9ULU8 1353 aa30.19■■■□□ 2.42
PHGDH-230ENST00000641927 CFTRP13569 1480 aa30.14■■■□□ 2.42
PHGDH-230ENST00000641927 NESP48681 1621 aa30.12■■■□□ 2.41
PHGDH-230ENST00000641927 LAMC3Q9Y6N6 1575 aa30.08■■■□□ 2.41
PHGDH-230ENST00000641927 PRDM2Q13029 1718 aa29.95■■■□□ 2.39
PHGDH-230ENST00000641927 PDS5BQ9NTI5 1447 aa29.89■■■□□ 2.38
PHGDH-230ENST00000641927 FANCD2Q9BXW9 1451 aa29.86■■■□□ 2.37
PHGDH-230ENST00000641927 KIF21AQ7Z4S6 1674 aa29.76■■■□□ 2.35
PHGDH-230ENST00000641927 CEP164Q9UPV0 1460 aa29.75■■■□□ 2.35
PHGDH-230ENST00000641927 ERCC6Q03468 1493 aa29.75■■■□□ 2.35
PHGDH-230ENST00000641927 ABCC8Q09428 1581 aa29.73■■■□□ 2.35
PHGDH-230ENST00000641927 WRNQ14191 1432 aaPredicted RBP eCLIP29.63■■■□□ 2.33
PHGDH-230ENST00000641927 CHIC1Q5VXU3 224 aa29.63■■■□□ 2.33
PHGDH-230ENST00000641927 TRIM41Q8WV44 630 aa29.54■■■□□ 2.32
PHGDH-230ENST00000641927 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
PHGDH-230ENST00000641927 CUX1P39880 1505 aa29.52■■■□□ 2.32
PHGDH-230ENST00000641927 SYNJ1O43426 1573 aa29.51■■■□□ 2.31
PHGDH-230ENST00000641927 URB2Q14146 1524 aaKnown RBP29.5■■■□□ 2.31
PHGDH-230ENST00000641927 DNMBPQ6XZF7 1577 aa29.47■■■□□ 2.31
PHGDH-230ENST00000641927 TOPBP1Q92547 1522 aa29.45■■■□□ 2.31
PHGDH-230ENST00000641927 TOP2BQ02880 1626 aa29.44■■■□□ 2.3
PHGDH-230ENST00000641927 THOC2Q8NI27 1593 aaKnown RBP29.43■■■□□ 2.3
PHGDH-230ENST00000641927 BIVM-ERCC5R4GMW8 1640 aa29.41■■■□□ 2.3
PHGDH-230ENST00000641927 WDR62O43379 1518 aa29.38■■■□□ 2.29
PHGDH-230ENST00000641927 FGD5Q6ZNL6 1462 aa29.32■■■□□ 2.28
PHGDH-230ENST00000641927 POLA1P09884 1462 aaPredicted RBP29.26■■■□□ 2.27
PHGDH-230ENST00000641927 SOGA1O94964 1423 aa29.18■■■□□ 2.26
PHGDH-230ENST00000641927 RAD54L2Q9Y4B4 1467 aa29.16■■■□□ 2.26
PHGDH-230ENST00000641927 CUX2O14529 1486 aa29.13■■■□□ 2.25
PHGDH-230ENST00000641927 IFT140Q96RY7 1462 aa29.07■■■□□ 2.24
PHGDH-230ENST00000641927 TARBP1Q13395 1621 aaKnown RBP29.04■■■□□ 2.24
PHGDH-230ENST00000641927 ABCA10Q8WWZ4 1543 aa29.03■■■□□ 2.24
PHGDH-230ENST00000641927 FAM9AQ8IZU1 332 aaPredicted RBP28.99■■■□□ 2.23
PHGDH-230ENST00000641927 WDR97A6NE52 1622 aa28.97■■■□□ 2.23
PHGDH-230ENST00000641927 RUSC2Q8N2Y8 1516 aa28.96■■■□□ 2.23
PHGDH-230ENST00000641927 TDRD9Q8NDG6 1382 aaKnown RBP28.95■■■□□ 2.23
PHGDH-230ENST00000641927 KIF27Q86VH2 1401 aa28.95■■■□□ 2.23
PHGDH-230ENST00000641927 ZNF608Q9ULD9 1512 aaPredicted RBP28.91■■■□□ 2.22
PHGDH-230ENST00000641927 AQRO60306 1485 aaKnown RBP eCLIP28.87■■■□□ 2.211e-6■■□□□ 14.4
PHGDH-230ENST00000641927 EEA1Q15075 1411 aa28.86■■■□□ 2.21
PHGDH-230ENST00000641927 GAPVD1Q14C86 1478 aa28.85■■■□□ 2.21
PHGDH-230ENST00000641927 ABCA5Q8WWZ7 1642 aa28.84■■■□□ 2.21
PHGDH-230ENST00000641927 EIF4G3O43432 1585 aaKnown RBP28.81■■■□□ 2.2
PHGDH-230ENST00000641927 CSRNP3Q8WYN3 585 aa28.78■■■□□ 2.2
PHGDH-230ENST00000641927 GRIN2BQ13224 1484 aa28.72■■■□□ 2.19
PHGDH-230ENST00000641927 IGF1RP08069 1367 aa28.72■■■□□ 2.19
PHGDH-230ENST00000641927 PBRM1Q86U86 1689 aa28.72■■■□□ 2.19
PHGDH-230ENST00000641927 ERICH3Q5RHP9 1530 aa28.69■■■□□ 2.18
PHGDH-230ENST00000641927 EHMT2Q96KQ7 1210 aa28.63■■■□□ 2.17
PHGDH-230ENST00000641927 SNAPC4Q5SXM2 1469 aa28.61■■■□□ 2.17
PHGDH-230ENST00000641927 CARMIL1Q5VZK9 1371 aa28.59■■■□□ 2.17
PHGDH-230ENST00000641927 CUL7Q14999 1698 aa28.59■■■□□ 2.17
PHGDH-230ENST00000641927 MAGI1Q96QZ7 1491 aaPredicted RBP28.55■■■□□ 2.16
PHGDH-230ENST00000641927 PRXQ9BXM0 1461 aa28.55■■■□□ 2.16
PHGDH-230ENST00000641927 ADAMTS12P58397 1594 aa28.52■■■□□ 2.16
PHGDH-230ENST00000641927 FHAD1B1AJZ9 1412 aa28.52■■■□□ 2.16
PHGDH-230ENST00000641927 KIF21BO75037 1637 aa28.51■■■□□ 2.15
PHGDH-230ENST00000641927 RAPGEF2Q9Y4G8 1499 aa28.5■■■□□ 2.15
PHGDH-230ENST00000641927 LOC105371045A0A1W2PR82 267 aa28.49■■■□□ 2.15
PHGDH-230ENST00000641927 FBLN2P98095 1184 aa28.48■■■□□ 2.15
PHGDH-230ENST00000641927 CHMP7Q8WUX9 453 aaPredicted RBP28.45■■■□□ 2.15
PHGDH-230ENST00000641927 GOLGA3Q08378 1498 aa28.45■■■□□ 2.15
PHGDH-230ENST00000641927 SYNJ2O15056 1496 aa28.44■■■□□ 2.14
PHGDH-230ENST00000641927 UBTFP17480 764 aaKnown RBP28.41■■■□□ 2.14
PHGDH-230ENST00000641927 GRIN2AQ12879 1464 aa28.36■■■□□ 2.13
PHGDH-230ENST00000641927 CHD1O14646 1710 aa28.32■■■□□ 2.12
PHGDH-230ENST00000641927 TNIKQ9UKE5 1360 aa28.21■■■□□ 2.11
PHGDH-230ENST00000641927 CEP170Q5SW79 1584 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms