RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, humanhuman

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-223ENST00000641597 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
PHGDH-223ENST00000641597 SHROOM4Q9ULL8 1493 aa30.19■■■□□ 2.42
PHGDH-223ENST00000641597 SUPT5HO00267 1087 aaKnown RBP29.55■■■□□ 2.32
PHGDH-223ENST00000641597 ZCCHC6Q5VYS8 1495 aaKnown RBP29.54■■■□□ 2.32
PHGDH-223ENST00000641597 CCDC180Q9P1Z9 1646 aa29.54■■■□□ 2.32
PHGDH-223ENST00000641597 DCAF8L2P0C7V8 631 aa29.39■■■□□ 2.29
PHGDH-223ENST00000641597 CHIC1Q5VXU3 224 aa28.57■■■□□ 2.16
PHGDH-223ENST00000641597 MYO15BQ96JP2 1530 aa28.56■■■□□ 2.16
PHGDH-223ENST00000641597 DCAF1Q9Y4B6 1507 aa28.46■■■□□ 2.15
PHGDH-223ENST00000641597 SCRIBQ14160 1630 aa28.01■■■□□ 2.08
PHGDH-223ENST00000641597 LOC105371045A0A1W2PR82 267 aa27.92■■■□□ 2.06
PHGDH-223ENST00000641597 ABCC9O60706 1549 aa27.86■■■□□ 2.05
PHGDH-223ENST00000641597 PCGF6Q9BYE7 350 aa27.79■■■□□ 2.04
PHGDH-223ENST00000641597 RSF1Q96T23 1441 aaPredicted RBP27.74■■■□□ 2.03
PHGDH-223ENST00000641597 HRCP23327 699 aa27.59■■■□□ 2.01
PHGDH-223ENST00000641597 RB1CC1Q8TDY2 1594 aa27.52■■■□□ 2
PHGDH-223ENST00000641597 CECR2Q9BXF3 1484 aa27.47■■□□□ 1.99
PHGDH-223ENST00000641597 FAM9AQ8IZU1 332 aaPredicted RBP27.38■■□□□ 1.97
PHGDH-223ENST00000641597 TRIM41Q8WV44 630 aa27.36■■□□□ 1.97
PHGDH-223ENST00000641597 NACADO15069 1562 aa27.36■■□□□ 1.97
PHGDH-223ENST00000641597 PPARGC1BQ86YN6 1023 aaKnown RBP27.34■■□□□ 1.97
PHGDH-223ENST00000641597 EHMT2Q96KQ7 1210 aa27.33■■□□□ 1.97
PHGDH-223ENST00000641597 MROH2BQ7Z745 1585 aa27.3■■□□□ 1.96
PHGDH-223ENST00000641597 WIZO95785 1651 aa27.17■■□□□ 1.94
PHGDH-223ENST00000641597 TRIM26Q12899 539 aaPredicted RBP27.04■■□□□ 1.92
PHGDH-223ENST00000641597 BAZ1AQ9NRL2 1556 aaPredicted RBP26.82■■□□□ 1.88
PHGDH-223ENST00000641597 UNC13AQ9UPW8 1703 aa26.72■■□□□ 1.87
PHGDH-223ENST00000641597 PABPN1Q86U42 306 aaKnown RBP eCLIP26.68■■□□□ 1.86
PHGDH-223ENST00000641597 EIF4G1Q04637 1599 aaKnown RBP26.66■■□□□ 1.86
PHGDH-223ENST00000641597 ABCC8Q09428 1581 aa26.64■■□□□ 1.85
PHGDH-223ENST00000641597 SMARCA4P51532 1647 aa26.63■■□□□ 1.85
PHGDH-223ENST00000641597 CCDC88BA6NC98 1476 aa26.59■■□□□ 1.85
PHGDH-223ENST00000641597 TOP2AP11388 1531 aaKnown RBP26.56■■□□□ 1.84
PHGDH-223ENST00000641597 SMARCA2P51531 1590 aa26.5■■□□□ 1.83
PHGDH-223ENST00000641597 TTBK1Q5TCY1 1321 aaPredicted RBP26.4■■□□□ 1.82
PHGDH-223ENST00000641597 BICRAQ9NZM4 1560 aa26.38■■□□□ 1.81
PHGDH-223ENST00000641597 SOGA1O94964 1423 aa26.37■■□□□ 1.81
PHGDH-223ENST00000641597 RUSC2Q8N2Y8 1516 aa26.3■■□□□ 1.8
PHGDH-223ENST00000641597 ZEB1P37275 1124 aaPredicted RBP26.24■■□□□ 1.79
PHGDH-223ENST00000641597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.21■■□□□ 1.79
PHGDH-223ENST00000641597 CEP162Q5TB80 1403 aa26.14■■□□□ 1.77
PHGDH-223ENST00000641597 UBTFP17480 764 aaKnown RBP26.11■■□□□ 1.77
PHGDH-223ENST00000641597 CSRNP3Q8WYN3 585 aa26.11■■□□□ 1.77
PHGDH-223ENST00000641597 WRNQ14191 1432 aaPredicted RBP eCLIP26.03■■□□□ 1.76
PHGDH-223ENST00000641597 CCER1Q8TC90 406 aaPredicted RBP26.01■■□□□ 1.75
PHGDH-223ENST00000641597 TNIKQ9UKE5 1360 aa25.99■■□□□ 1.75
PHGDH-223ENST00000641597 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
PHGDH-223ENST00000641597 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
PHGDH-223ENST00000641597 SYNJ1O43426 1573 aa25.97■■□□□ 1.75
PHGDH-223ENST00000641597 BAZ1BQ9UIG0 1483 aaKnown RBP25.91■■□□□ 1.74
PHGDH-223ENST00000641597 EEA1Q15075 1411 aa25.87■■□□□ 1.73
PHGDH-223ENST00000641597 RANGAP1P46060 587 aaPredicted RBP25.86■■□□□ 1.73
PHGDH-223ENST00000641597 GOLGA3Q08378 1498 aa25.85■■□□□ 1.73
PHGDH-223ENST00000641597 CEP164Q9UPV0 1460 aa25.68■■□□□ 1.7
PHGDH-223ENST00000641597 RAPGEF2Q9Y4G8 1499 aa25.68■■□□□ 1.7
PHGDH-223ENST00000641597 CLIP1P30622 1438 aa25.64■■□□□ 1.69
PHGDH-223ENST00000641597 HNRNPUL2Q1KMD3 747 aaKnown RBP25.61■■□□□ 1.69
PHGDH-223ENST00000641597 KIF21BO75037 1637 aa25.61■■□□□ 1.69
PHGDH-223ENST00000641597 SCAF1Q9H7N4 1312 aaKnown RBP25.54■■□□□ 1.68
PHGDH-223ENST00000641597 TOP2BQ02880 1626 aa25.51■■□□□ 1.67
PHGDH-223ENST00000641597 VPS8Q8N3P4 1428 aa25.47■■□□□ 1.67
PHGDH-223ENST00000641597 DIEXFQ68CQ4 756 aaKnown RBP25.45■■□□□ 1.66
PHGDH-223ENST00000641597 NCAPD3P42695 1498 aa25.39■■□□□ 1.66
PHGDH-223ENST00000641597 CUX1P39880 1505 aa25.38■■□□□ 1.65
PHGDH-223ENST00000641597 APLP2Q06481 763 aa25.38■■□□□ 1.65
PHGDH-223ENST00000641597 BIVM-ERCC5R4GMW8 1640 aa25.38■■□□□ 1.65
PHGDH-223ENST00000641597 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
PHGDH-223ENST00000641597 PRXQ9BXM0 1461 aa25.3■■□□□ 1.64
PHGDH-223ENST00000641597 NEUROD1Q13562 356 aa25.29■■□□□ 1.64
PHGDH-223ENST00000641597 KANK4Q5T7N3 995 aaPredicted RBP25.27■■□□□ 1.64
PHGDH-223ENST00000641597 ARAP1Q96P48 1450 aa25.24■■□□□ 1.63
PHGDH-223ENST00000641597 CFTRP13569 1480 aa25.23■■□□□ 1.63
PHGDH-223ENST00000641597 ZNF316A6NFI3 1004 aaPredicted RBP25.2■■□□□ 1.63
PHGDH-223ENST00000641597 ERICH3Q5RHP9 1530 aa25.18■■□□□ 1.62
PHGDH-223ENST00000641597 KIF27Q86VH2 1401 aa25.18■■□□□ 1.62
PHGDH-223ENST00000641597 ACIN1Q9UKV3 1341 aaKnown RBP25.18■■□□□ 1.62
PHGDH-223ENST00000641597 YTHDC1Q96MU7 727 aaKnown RBP25.05■■□□□ 1.6
PHGDH-223ENST00000641597 CUX2O14529 1486 aa25.04■■□□□ 1.6
PHGDH-223ENST00000641597 ARHGAP35Q9NRY4 1499 aa25.03■■□□□ 1.6
PHGDH-223ENST00000641597 ITGAEP38570 1179 aa25.01■■□□□ 1.59
PHGDH-223ENST00000641597 MIER1Q8N108 512 aa25■■□□□ 1.59
PHGDH-223ENST00000641597 IGF1RP08069 1367 aa24.99■■□□□ 1.59
PHGDH-223ENST00000641597 GTF3C3Q9Y5Q9 886 aa24.99■■□□□ 1.59
PHGDH-223ENST00000641597 CADPSQ9ULU8 1353 aa24.98■■□□□ 1.59
PHGDH-223ENST00000641597 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
PHGDH-223ENST00000641597 DHX57Q6P158 1386 aaKnown RBP24.94■■□□□ 1.58
PHGDH-223ENST00000641597 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
PHGDH-223ENST00000641597 P3H3Q8IVL6 736 aa24.9■■□□□ 1.58
PHGDH-223ENST00000641597 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
PHGDH-223ENST00000641597 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
PHGDH-223ENST00000641597 CARMIL1Q5VZK9 1371 aa24.87■■□□□ 1.57
PHGDH-223ENST00000641597 RRBP1Q9P2E9 1410 aaKnown RBP24.84■■□□□ 1.57
PHGDH-223ENST00000641597 CCNB3Q8WWL7 1395 aa24.81■■□□□ 1.56
PHGDH-223ENST00000641597 RAD54L2Q9Y4B4 1467 aa24.79■■□□□ 1.56
PHGDH-223ENST00000641597 NESP48681 1621 aa24.79■■□□□ 1.56
PHGDH-223ENST00000641597 ATP1B4Q9UN42 357 aaPredicted RBP24.78■■□□□ 1.56
PHGDH-223ENST00000641597 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
PHGDH-223ENST00000641597 TIAM1Q13009 1591 aa24.68■■□□□ 1.54
PHGDH-223ENST00000641597 PHLDB1Q86UU1 1377 aa24.66■■□□□ 1.54
PHGDH-223ENST00000641597 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms