RNA–Protein interactions for RNA: ENST00000466425.1

PSMB4-202, Transcript of proteasome subunit beta 4, humanhuman

TSL 2

Gene PSMB4, Length 665 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMB4-202ENST00000466425 AEBP2Q6ZN18 517 aaPredicted RBP21.84■■□□□ 1.09
PSMB4-202ENST00000466425 CHIC1Q5VXU3 224 aa20.41■□□□□ 0.86
PSMB4-202ENST00000466425 SENP3Q9H4L4 574 aaPredicted RBP18.82■□□□□ 0.6
PSMB4-202ENST00000466425 POTEDQ86YR6 584 aa18.47■□□□□ 0.55
PSMB4-202ENST00000466425 PHF23Q9BUL5 403 aaPredicted RBP18.44■□□□□ 0.54
PSMB4-202ENST00000466425 FOXD1Q16676 465 aa17.68■□□□□ 0.42
PSMB4-202ENST00000466425 MSH5O43196 834 aa16.98■□□□□ 0.31
PSMB4-202ENST00000466425 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
PSMB4-202ENST00000466425 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
PSMB4-202ENST00000466425 ADRA2BP18089 450 aa15.59■□□□□ 0.09
PSMB4-202ENST00000466425 CACNB1Q02641 598 aaPredicted RBP15.3■□□□□ 0.04
PSMB4-202ENST00000466425 PLPPR3Q6T4P5 718 aa15.22■□□□□ 0.03
PSMB4-202ENST00000466425 DMRT2Q9Y5R5 561 aa14.73□□□□□ -0.05
PSMB4-202ENST00000466425 MAPK8IP2Q13387 824 aaPredicted RBP14.67□□□□□ -0.06
PSMB4-202ENST00000466425 RNF39Q9H2S5 420 aa14.37□□□□□ -0.11
PSMB4-202ENST00000466425 DCAF8L1A6NGE4 600 aa14.3□□□□□ -0.12
PSMB4-202ENST00000466425 SCAF1Q9H7N4 1312 aaKnown RBP14.28□□□□□ -0.12
PSMB4-202ENST00000466425 POTEHQ6S545 545 aa14.27□□□□□ -0.13
PSMB4-202ENST00000466425 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
PSMB4-202ENST00000466425 NISCHQ9Y2I1 1504 aa14.07□□□□□ -0.16
PSMB4-202ENST00000466425 HOXD11P31277 338 aaPredicted RBP13.74□□□□□ -0.21
PSMB4-202ENST00000466425 DNAJC5BQ9UF47 199 aa13.45□□□□□ -0.26
PSMB4-202ENST00000466425 RNF216Q9NWF9 866 aaPredicted RBP13.36□□□□□ -0.27
PSMB4-202ENST00000466425 PPP4R3CPQ6ZMV5 832 aa13.2□□□□□ -0.3
PSMB4-202ENST00000466425 CNKSR2Q8WXI2 1034 aa13.2□□□□□ -0.3
PSMB4-202ENST00000466425 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.17□□□□□ -0.3
PSMB4-202ENST00000466425 DSG3P32926 999 aa13.09□□□□□ -0.31
PSMB4-202ENST00000466425 CAPN15O75808 1086 aa12.96□□□□□ -0.33
PSMB4-202ENST00000466425 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.34
PSMB4-202ENST00000466425 SP7Q8TDD2 431 aaPredicted RBP12.84□□□□□ -0.35
PSMB4-202ENST00000466425 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
PSMB4-202ENST00000466425 CHRDL2Q6WN34 429 aa12.71□□□□□ -0.37
PSMB4-202ENST00000466425 U3KPZ7 1027 aaPredicted RBP12.71□□□□□ -0.37
PSMB4-202ENST00000466425 KCNA4P22459 653 aa12.6□□□□□ -0.39
PSMB4-202ENST00000466425 ABCB7O75027 752 aa12.55□□□□□ -0.4
PSMB4-202ENST00000466425 NPM3O75607 178 aaKnown RBP12.54□□□□□ -0.4
PSMB4-202ENST00000466425 RBM42Q9BTD8 480 aaKnown RBP12.52□□□□□ -0.41
PSMB4-202ENST00000466425 TRHP20396 242 aaPredicted RBP12.49□□□□□ -0.41
PSMB4-202ENST00000466425 CCDC180Q9P1Z9 1646 aa12.38□□□□□ -0.43
PSMB4-202ENST00000466425 ZNF219Q9P2Y4 722 aaPredicted RBP12.37□□□□□ -0.43
PSMB4-202ENST00000466425 HAX1O00165 279 aa12.3□□□□□ -0.44
PSMB4-202ENST00000466425 PLSCR2Q9NRY7 297 aa12.29□□□□□ -0.44
PSMB4-202ENST00000466425 APLP2Q06481 763 aa12.25□□□□□ -0.45
PSMB4-202ENST00000466425 PIP4P2Q8N4L2 257 aa12.15□□□□□ -0.46
PSMB4-202ENST00000466425 LHX8Q68G74 356 aa12.05□□□□□ -0.48
PSMB4-202ENST00000466425 EVX2Q03828 476 aa12.02□□□□□ -0.49
PSMB4-202ENST00000466425 AKT1S1Q96B36 256 aa12□□□□□ -0.49
PSMB4-202ENST00000466425 SLC4A1APQ9BWU0 796 aaKnown RBP12□□□□□ -0.49
PSMB4-202ENST00000466425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.98□□□□□ -0.49
PSMB4-202ENST00000466425 HNRNPUL2Q1KMD3 747 aaKnown RBP11.98□□□□□ -0.49
PSMB4-202ENST00000466425 SLC4A2P04920 1241 aa11.9□□□□□ -0.5
PSMB4-202ENST00000466425 REM2Q8IYK8 340 aaPredicted RBP11.9□□□□□ -0.5
PSMB4-202ENST00000466425 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
PSMB4-202ENST00000466425 POLA2Q14181 598 aa11.88□□□□□ -0.51
PSMB4-202ENST00000466425 ZCCHC6Q5VYS8 1495 aaKnown RBP11.86□□□□□ -0.51
PSMB4-202ENST00000466425 SAMD1Q6SPF0 538 aaPredicted RBP11.85□□□□□ -0.51
PSMB4-202ENST00000466425 ABCC9O60706 1549 aa11.85□□□□□ -0.51
PSMB4-202ENST00000466425 PITPNM1O00562 1244 aa11.78□□□□□ -0.52
PSMB4-202ENST00000466425 GABBR2O75899 941 aa11.69□□□□□ -0.54
PSMB4-202ENST00000466425 DCAF1Q9Y4B6 1507 aa11.68□□□□□ -0.54
PSMB4-202ENST00000466425 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
PSMB4-202ENST00000466425 SHROOM4Q9ULL8 1493 aa11.63□□□□□ -0.55
PSMB4-202ENST00000466425 MYCNP04198 464 aaPredicted RBP11.61□□□□□ -0.55
PSMB4-202ENST00000466425 DCAF8L2P0C7V8 631 aa11.61□□□□□ -0.55
PSMB4-202ENST00000466425 RB1CC1Q8TDY2 1594 aa11.55□□□□□ -0.56
PSMB4-202ENST00000466425 C19orf67A6NJJ6 358 aa11.55□□□□□ -0.56
PSMB4-202ENST00000466425 ZBTB22O15209 634 aa11.54□□□□□ -0.56
PSMB4-202ENST00000466425 NACADO15069 1562 aa11.54□□□□□ -0.56
PSMB4-202ENST00000466425 OSCARQ8IYS5 282 aa11.52□□□□□ -0.57
PSMB4-202ENST00000466425 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
PSMB4-202ENST00000466425 MYO15BQ96JP2 1530 aa11.5□□□□□ -0.57
PSMB4-202ENST00000466425 PRKAR2AP13861 404 aaKnown RBP11.48□□□□□ -0.57
PSMB4-202ENST00000466425 EHMT2Q96KQ7 1210 aa11.48□□□□□ -0.57
PSMB4-202ENST00000466425 UNC13AQ9UPW8 1703 aa11.44□□□□□ -0.58
PSMB4-202ENST00000466425 POTEMA6NI47 508 aa11.41□□□□□ -0.58
PSMB4-202ENST00000466425 POTEIP0CG38 1075 aa11.41□□□□□ -0.58
PSMB4-202ENST00000466425 SUPT5HO00267 1087 aaKnown RBP11.37□□□□□ -0.59
PSMB4-202ENST00000466425 POTEGQ6S5H5 508 aa11.34□□□□□ -0.59
PSMB4-202ENST00000466425 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
PSMB4-202ENST00000466425 ATF5Q9Y2D1 282 aaPredicted RBP11.3□□□□□ -0.6
PSMB4-202ENST00000466425 PCDH10Q9P2E7 1040 aa11.27□□□□□ -0.61
PSMB4-202ENST00000466425 CLEC11AQ9Y240 323 aa11.26□□□□□ -0.61
PSMB4-202ENST00000466425 ATXN8OSP0DMR3 200 aa11.22□□□□□ -0.61
PSMB4-202ENST00000466425 OTUD5Q96G74 571 aa11.21□□□□□ -0.61
PSMB4-202ENST00000466425 DCBLD2Q96PD2 775 aa11.17□□□□□ -0.62
PSMB4-202ENST00000466425 BICRAQ9NZM4 1560 aa11.16□□□□□ -0.62
PSMB4-202ENST00000466425 SPDYE1Q8NFV5 336 aaPredicted RBP11.16□□□□□ -0.62
PSMB4-202ENST00000466425 SCRIBQ14160 1630 aa11.15□□□□□ -0.62
PSMB4-202ENST00000466425 CHADLQ6NUI6 762 aa11.14□□□□□ -0.63
PSMB4-202ENST00000466425 CLCN6P51797 869 aa11.09□□□□□ -0.63
PSMB4-202ENST00000466425 SPDYE2BA6NHP3 402 aa11.06□□□□□ -0.64
PSMB4-202ENST00000466425 SPDYE6P0CI01 402 aa11.06□□□□□ -0.64
PSMB4-202ENST00000466425 CD44P16070 742 aaKnown RBP11.06□□□□□ -0.64
PSMB4-202ENST00000466425 SPDYE2Q495Y8 402 aa11.06□□□□□ -0.64
PSMB4-202ENST00000466425 RSF1Q96T23 1441 aaPredicted RBP11.02□□□□□ -0.64
PSMB4-202ENST00000466425 POTEB2H3BUK9 544 aa11.02□□□□□ -0.65
PSMB4-202ENST00000466425 PABPN1Q86U42 306 aaKnown RBP eCLIP10.97□□□□□ -0.65
PSMB4-202ENST00000466425 FBLN2P98095 1184 aa10.93□□□□□ -0.66
PSMB4-202ENST00000466425 PRR29P0C7W0 189 aa10.89□□□□□ -0.67
PSMB4-202ENST00000466425 CECR2Q9BXF3 1484 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms