RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
TRAF4-212ENST00000498540 ABCC9O60706 1549 aa33.94■■■■□ 3.02
TRAF4-212ENST00000498540 CCDC180Q9P1Z9 1646 aa33.71■■■□□ 2.99
TRAF4-212ENST00000498540 RB1CC1Q8TDY2 1594 aa32.19■■■□□ 2.74
TRAF4-212ENST00000498540 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
TRAF4-212ENST00000498540 NACADO15069 1562 aa31.9■■■□□ 2.7
TRAF4-212ENST00000498540 DCAF8L2P0C7V8 631 aa31.62■■■□□ 2.65
TRAF4-212ENST00000498540 UNC13AQ9UPW8 1703 aa31.55■■■□□ 2.64
TRAF4-212ENST00000498540 PABPN1Q86U42 306 aaKnown RBP eCLIP31.53■■■□□ 2.64
TRAF4-212ENST00000498540 MYO15BQ96JP2 1530 aa31.36■■■□□ 2.61
TRAF4-212ENST00000498540 BICRAQ9NZM4 1560 aa31.31■■■□□ 2.6
TRAF4-212ENST00000498540 ZCCHC6Q5VYS8 1495 aaKnown RBP30.97■■■□□ 2.55
TRAF4-212ENST00000498540 DCAF1Q9Y4B6 1507 aa30.87■■■□□ 2.53
TRAF4-212ENST00000498540 SHROOM4Q9ULL8 1493 aa30.79■■■□□ 2.52
TRAF4-212ENST00000498540 SCRIBQ14160 1630 aa30.72■■■□□ 2.51
TRAF4-212ENST00000498540 CC2D2AQ9P2K1 1620 aa30.67■■■□□ 2.5
TRAF4-212ENST00000498540 CECR2Q9BXF3 1484 aa30.59■■■□□ 2.49
TRAF4-212ENST00000498540 EIF4G1Q04637 1599 aaKnown RBP30.54■■■□□ 2.48
TRAF4-212ENST00000498540 DNAJC5Q9H3Z4 198 aa29.58■■■□□ 2.33
TRAF4-212ENST00000498540 NCAPD3P42695 1498 aa29.43■■■□□ 2.3
TRAF4-212ENST00000498540 CUX2O14529 1486 aa29.34■■■□□ 2.29
TRAF4-212ENST00000498540 ATAD2BQ9ULI0 1458 aa29.33■■■□□ 2.29
TRAF4-212ENST00000498540 ERCC6Q03468 1493 aa29.3■■■□□ 2.28
TRAF4-212ENST00000498540 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
TRAF4-212ENST00000498540 SMARCA2P51531 1590 aa29.23■■■□□ 2.27
TRAF4-212ENST00000498540 HMGXB3Q12766 1538 aa29.23■■■□□ 2.27
TRAF4-212ENST00000498540 NESP48681 1621 aa29.11■■■□□ 2.25
TRAF4-212ENST00000498540 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
TRAF4-212ENST00000498540 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
TRAF4-212ENST00000498540 PEG3Q9GZU2 1588 aa28.97■■■□□ 2.23
TRAF4-212ENST00000498540 THOC2Q8NI27 1593 aaKnown RBP28.89■■■□□ 2.22
TRAF4-212ENST00000498540 MROH2BQ7Z745 1585 aa28.84■■■□□ 2.21
TRAF4-212ENST00000498540 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
TRAF4-212ENST00000498540 KIF21AQ7Z4S6 1674 aa28.76■■■□□ 2.19
TRAF4-212ENST00000498540 PDS5BQ9NTI5 1447 aa28.63■■■□□ 2.17
TRAF4-212ENST00000498540 CADPSQ9ULU8 1353 aa28.51■■■□□ 2.16
TRAF4-212ENST00000498540 WIZO95785 1651 aa28.51■■■□□ 2.15
TRAF4-212ENST00000498540 MRC2Q9UBG0 1479 aa28.45■■■□□ 2.14
TRAF4-212ENST00000498540 WDR62O43379 1518 aa28.41■■■□□ 2.14
TRAF4-212ENST00000498540 CEP164Q9UPV0 1460 aa28.28■■■□□ 2.12
TRAF4-212ENST00000498540 FANCD2Q9BXW9 1451 aa28.22■■■□□ 2.11
TRAF4-212ENST00000498540 TRIM41Q8WV44 630 aa28.2■■■□□ 2.1
TRAF4-212ENST00000498540 CFTRP13569 1480 aa28.16■■■□□ 2.1
TRAF4-212ENST00000498540 RSF1Q96T23 1441 aaPredicted RBP28.12■■■□□ 2.09
TRAF4-212ENST00000498540 TOP2AP11388 1531 aaKnown RBP28.11■■■□□ 2.09
TRAF4-212ENST00000498540 URB2Q14146 1524 aaKnown RBP28.03■■■□□ 2.08
TRAF4-212ENST00000498540 PRDM2Q13029 1718 aa27.93■■■□□ 2.06
TRAF4-212ENST00000498540 OSCARQ8IYS5 282 aa27.9■■■□□ 2.06
TRAF4-212ENST00000498540 CCDC88BA6NC98 1476 aa27.77■■■□□ 2.04
TRAF4-212ENST00000498540 ZNF608Q9ULD9 1512 aaPredicted RBP27.73■■■□□ 2.03
TRAF4-212ENST00000498540 IFT140Q96RY7 1462 aa27.7■■■□□ 2.03
TRAF4-212ENST00000498540 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
TRAF4-212ENST00000498540 RIMBP3CA6NJZ7 1639 aa27.67■■■□□ 2.02
TRAF4-212ENST00000498540 RIMBP3BA6NNM3 1639 aa27.67■■■□□ 2.02
TRAF4-212ENST00000498540 RIMBP3Q9UFD9 1639 aa27.67■■■□□ 2.02
TRAF4-212ENST00000498540 EIF4G3O43432 1585 aaKnown RBP27.59■■■□□ 2.01
TRAF4-212ENST00000498540 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
TRAF4-212ENST00000498540 ARHGEF11O15085 1522 aa27.54■■■□□ 2
TRAF4-212ENST00000498540 ABCC8Q09428 1581 aa27.53■■■□□ 2
TRAF4-212ENST00000498540 TARBP1Q13395 1621 aaKnown RBP27.47■■□□□ 1.99
TRAF4-212ENST00000498540 CHD1O14646 1710 aa27.45■■□□□ 1.99
TRAF4-212ENST00000498540 AQRO60306 1485 aaKnown RBP eCLIP27.42■■□□□ 1.983e-10■■■■□ 22
TRAF4-212ENST00000498540 POLA1P09884 1462 aaPredicted RBP27.38■■□□□ 1.97
TRAF4-212ENST00000498540 CYB5RLQ6IPT4 315 aa27.29■■□□□ 1.96
TRAF4-212ENST00000498540 RAD54L2Q9Y4B4 1467 aa27.29■■□□□ 1.96
TRAF4-212ENST00000498540 ARAP1Q96P48 1450 aa27.26■■□□□ 1.95
TRAF4-212ENST00000498540 FBLN2P98095 1184 aa27.25■■□□□ 1.95
TRAF4-212ENST00000498540 SOGA1O94964 1423 aa27.21■■□□□ 1.95
TRAF4-212ENST00000498540 TDRD9Q8NDG6 1382 aaKnown RBP27.21■■□□□ 1.95
TRAF4-212ENST00000498540 FGD5Q6ZNL6 1462 aa27.17■■□□□ 1.94
TRAF4-212ENST00000498540 SNAPC4Q5SXM2 1469 aa27.15■■□□□ 1.94
TRAF4-212ENST00000498540 WDR97A6NE52 1622 aa27.13■■□□□ 1.93
TRAF4-212ENST00000498540 CUX1P39880 1505 aa27.12■■□□□ 1.93
TRAF4-212ENST00000498540 CLASP1Q7Z460 1538 aa27.1■■□□□ 1.93
TRAF4-212ENST00000498540 TRHP20396 242 aaPredicted RBP27.06■■□□□ 1.92
TRAF4-212ENST00000498540 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
TRAF4-212ENST00000498540 SYNJ1O43426 1573 aa27.03■■□□□ 1.92
TRAF4-212ENST00000498540 GRIN2BQ13224 1484 aa27.01■■□□□ 1.91
TRAF4-212ENST00000498540 CHMP7Q8WUX9 453 aaPredicted RBP26.99■■□□□ 1.91
TRAF4-212ENST00000498540 PBRM1Q86U86 1689 aa26.96■■□□□ 1.91
TRAF4-212ENST00000498540 SYNJ2O15056 1496 aa26.96■■□□□ 1.91
TRAF4-212ENST00000498540 GAPVD1Q14C86 1478 aa26.89■■□□□ 1.9
TRAF4-212ENST00000498540 ABCA5Q8WWZ7 1642 aa26.86■■□□□ 1.89
TRAF4-212ENST00000498540 ABCA10Q8WWZ4 1543 aa26.84■■□□□ 1.89
TRAF4-212ENST00000498540 GRIN2AQ12879 1464 aa26.69■■□□□ 1.86
TRAF4-212ENST00000498540 ERCC6L2Q5T890 1561 aa26.68■■□□□ 1.86
TRAF4-212ENST00000498540 ADAMTS12P58397 1594 aa26.67■■□□□ 1.86
TRAF4-212ENST00000498540 SUPT5HO00267 1087 aaKnown RBP26.65■■□□□ 1.86
TRAF4-212ENST00000498540 WRNQ14191 1432 aaPredicted RBP eCLIP26.65■■□□□ 1.86
TRAF4-212ENST00000498540 CEP170Q5SW79 1584 aa26.64■■□□□ 1.86
TRAF4-212ENST00000498540 BIVM-ERCC5R4GMW8 1640 aa26.63■■□□□ 1.85
TRAF4-212ENST00000498540 TOP2BQ02880 1626 aa26.61■■□□□ 1.85
TRAF4-212ENST00000498540 NUP160Q12769 1436 aa26.6■■□□□ 1.85
TRAF4-212ENST00000498540 SHROOM2Q13796 1616 aa26.55■■□□□ 1.84
TRAF4-212ENST00000498540 FHAD1B1AJZ9 1412 aa26.53■■□□□ 1.84
TRAF4-212ENST00000498540 ERICH3Q5RHP9 1530 aa26.49■■□□□ 1.83
TRAF4-212ENST00000498540 AEBP2Q6ZN18 517 aaPredicted RBP26.44■■□□□ 1.82
TRAF4-212ENST00000498540 KIF13AQ9H1H9 1805 aa26.35■■□□□ 1.81
TRAF4-212ENST00000498540 PRG4Q92954 1404 aaPredicted RBP26.35■■□□□ 1.81
TRAF4-212ENST00000498540 RUSC2Q8N2Y8 1516 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms