RNA–Protein interactions for RNA: ENST00000641213.1

PHGDH-211, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,053 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-211ENST00000641213 NISCHQ9Y2I1 1504 aa36.81■■■■□ 3.48
PHGDH-211ENST00000641213 CCDC180Q9P1Z9 1646 aa31.7■■■□□ 2.67
PHGDH-211ENST00000641213 ZCCHC6Q5VYS8 1495 aaKnown RBP31.07■■■□□ 2.56
PHGDH-211ENST00000641213 SHROOM4Q9ULL8 1493 aa30.75■■■□□ 2.51
PHGDH-211ENST00000641213 DCAF1Q9Y4B6 1507 aa30.34■■■□□ 2.45
PHGDH-211ENST00000641213 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
PHGDH-211ENST00000641213 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.38
PHGDH-211ENST00000641213 MYO15BQ96JP2 1530 aa29.65■■■□□ 2.34
PHGDH-211ENST00000641213 ABCC9O60706 1549 aa29.41■■■□□ 2.3
PHGDH-211ENST00000641213 SCRIBQ14160 1630 aa29.4■■■□□ 2.3
PHGDH-211ENST00000641213 NACADO15069 1562 aa29.32■■■□□ 2.28
PHGDH-211ENST00000641213 CHIC1Q5VXU3 224 aa29.01■■■□□ 2.24
PHGDH-211ENST00000641213 RB1CC1Q8TDY2 1594 aa28.91■■■□□ 2.22
PHGDH-211ENST00000641213 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
PHGDH-211ENST00000641213 CECR2Q9BXF3 1484 aa28.63■■■□□ 2.17
PHGDH-211ENST00000641213 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
PHGDH-211ENST00000641213 MROH2BQ7Z745 1585 aa28.54■■■□□ 2.16
PHGDH-211ENST00000641213 WIZO95785 1651 aa28.41■■■□□ 2.14
PHGDH-211ENST00000641213 BAZ1AQ9NRL2 1556 aaPredicted RBP28.33■■■□□ 2.13
PHGDH-211ENST00000641213 SMARCA4P51532 1647 aa28.17■■■□□ 2.1
PHGDH-211ENST00000641213 BICRAQ9NZM4 1560 aa28.12■■■□□ 2.09
PHGDH-211ENST00000641213 LOC105371045A0A1W2PR82 267 aa28.03■■■□□ 2.08
PHGDH-211ENST00000641213 TRIM41Q8WV44 630 aa28.01■■■□□ 2.07
PHGDH-211ENST00000641213 TOP2AP11388 1531 aaKnown RBP28■■■□□ 2.07
PHGDH-211ENST00000641213 PABPN1Q86U42 306 aaKnown RBP eCLIP27.93■■■□□ 2.06
PHGDH-211ENST00000641213 EIF4G1Q04637 1599 aaKnown RBP27.91■■■□□ 2.06
PHGDH-211ENST00000641213 SMARCA2P51531 1590 aa27.82■■■□□ 2.04
PHGDH-211ENST00000641213 CCDC88BA6NC98 1476 aa27.78■■■□□ 2.04
PHGDH-211ENST00000641213 PEG3Q9GZU2 1588 aa27.72■■■□□ 2.03
PHGDH-211ENST00000641213 FAM9AQ8IZU1 332 aaPredicted RBP27.64■■■□□ 2.01
PHGDH-211ENST00000641213 PCGF6Q9BYE7 350 aa27.55■■■□□ 2
PHGDH-211ENST00000641213 ABCC8Q09428 1581 aa27.53■■■□□ 2
PHGDH-211ENST00000641213 ATAD2BQ9ULI0 1458 aa27.48■■□□□ 1.99
PHGDH-211ENST00000641213 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
PHGDH-211ENST00000641213 HRCP23327 699 aa27.34■■□□□ 1.97
PHGDH-211ENST00000641213 EHMT2Q96KQ7 1210 aa27.31■■□□□ 1.96
PHGDH-211ENST00000641213 TRIM26Q12899 539 aaPredicted RBP27.26■■□□□ 1.95
PHGDH-211ENST00000641213 WRNQ14191 1432 aaPredicted RBP eCLIP27.14■■□□□ 1.94
PHGDH-211ENST00000641213 SOGA1O94964 1423 aa27.14■■□□□ 1.93
PHGDH-211ENST00000641213 HMGXB3Q12766 1538 aa27.09■■□□□ 1.93
PHGDH-211ENST00000641213 SYNJ1O43426 1573 aa27.08■■□□□ 1.93
PHGDH-211ENST00000641213 EEA1Q15075 1411 aa27.08■■□□□ 1.93
PHGDH-211ENST00000641213 NCAPD3P42695 1498 aa27.06■■□□□ 1.92
PHGDH-211ENST00000641213 RUSC2Q8N2Y8 1516 aa27.03■■□□□ 1.92
PHGDH-211ENST00000641213 CSRNP3Q8WYN3 585 aa26.95■■□□□ 1.9
PHGDH-211ENST00000641213 TNIKQ9UKE5 1360 aa26.87■■□□□ 1.89
PHGDH-211ENST00000641213 TOP2BQ02880 1626 aa26.85■■□□□ 1.89
PHGDH-211ENST00000641213 CEP162Q5TB80 1403 aa26.83■■□□□ 1.89
PHGDH-211ENST00000641213 BIVM-ERCC5R4GMW8 1640 aa26.82■■□□□ 1.88
PHGDH-211ENST00000641213 GOLGA3Q08378 1498 aa26.81■■□□□ 1.88
PHGDH-211ENST00000641213 KIF21BO75037 1637 aa26.78■■□□□ 1.88
PHGDH-211ENST00000641213 UBTFP17480 764 aaKnown RBP26.72■■□□□ 1.87
PHGDH-211ENST00000641213 CEP164Q9UPV0 1460 aa26.72■■□□□ 1.87
PHGDH-211ENST00000641213 PPARGC1BQ86YN6 1023 aaKnown RBP26.71■■□□□ 1.87
PHGDH-211ENST00000641213 PRDM2Q13029 1718 aa26.71■■□□□ 1.87
PHGDH-211ENST00000641213 CFTRP13569 1480 aa26.71■■□□□ 1.87
PHGDH-211ENST00000641213 CC2D2AQ9P2K1 1620 aa26.62■■□□□ 1.85
PHGDH-211ENST00000641213 CUX1P39880 1505 aa26.62■■□□□ 1.85
PHGDH-211ENST00000641213 RAPGEF2Q9Y4G8 1499 aa26.53■■□□□ 1.84
PHGDH-211ENST00000641213 ZEB1P37275 1124 aaPredicted RBP26.5■■□□□ 1.83
PHGDH-211ENST00000641213 CADPSQ9ULU8 1353 aa26.45■■□□□ 1.82
PHGDH-211ENST00000641213 CLIP1P30622 1438 aa26.44■■□□□ 1.82
PHGDH-211ENST00000641213 ERICH3Q5RHP9 1530 aa26.42■■□□□ 1.82
PHGDH-211ENST00000641213 PRXQ9BXM0 1461 aa26.39■■□□□ 1.82
PHGDH-211ENST00000641213 KIF27Q86VH2 1401 aa26.36■■□□□ 1.81
PHGDH-211ENST00000641213 TTBK1Q5TCY1 1321 aaPredicted RBP26.34■■□□□ 1.81
PHGDH-211ENST00000641213 VPS8Q8N3P4 1428 aa26.3■■□□□ 1.8
PHGDH-211ENST00000641213 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.78
PHGDH-211ENST00000641213 FGD5Q6ZNL6 1462 aa26.19■■□□□ 1.78
PHGDH-211ENST00000641213 RANGAP1P46060 587 aaPredicted RBP26.17■■□□□ 1.78
PHGDH-211ENST00000641213 CUX2O14529 1486 aa26.16■■□□□ 1.78
PHGDH-211ENST00000641213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.16■■□□□ 1.78
PHGDH-211ENST00000641213 ARAP1Q96P48 1450 aa26.11■■□□□ 1.77
PHGDH-211ENST00000641213 NESP48681 1621 aa26.1■■□□□ 1.77
PHGDH-211ENST00000641213 DNMBPQ6XZF7 1577 aa26.09■■□□□ 1.77
PHGDH-211ENST00000641213 CCER1Q8TC90 406 aaPredicted RBP26.08■■□□□ 1.77
PHGDH-211ENST00000641213 IGF1RP08069 1367 aa26.08■■□□□ 1.77
PHGDH-211ENST00000641213 APLP2Q06481 763 aa26.06■■□□□ 1.76
PHGDH-211ENST00000641213 LAMC3Q9Y6N6 1575 aa26.03■■□□□ 1.76
PHGDH-211ENST00000641213 TOPBP1Q92547 1522 aa26.01■■□□□ 1.75
PHGDH-211ENST00000641213 CARMIL1Q5VZK9 1371 aa25.96■■□□□ 1.75
PHGDH-211ENST00000641213 ARHGAP35Q9NRY4 1499 aa25.95■■□□□ 1.74
PHGDH-211ENST00000641213 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
PHGDH-211ENST00000641213 ABCA10Q8WWZ4 1543 aa25.93■■□□□ 1.74
PHGDH-211ENST00000641213 RAD54L2Q9Y4B4 1467 aa25.93■■□□□ 1.74
PHGDH-211ENST00000641213 URB2Q14146 1524 aaKnown RBP25.86■■□□□ 1.73
PHGDH-211ENST00000641213 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
PHGDH-211ENST00000641213 HNRNPUL2Q1KMD3 747 aaKnown RBP25.82■■□□□ 1.72
PHGDH-211ENST00000641213 DNAJC5BQ9UF47 199 aa25.82■■□□□ 1.72
PHGDH-211ENST00000641213 KIF21AQ7Z4S6 1674 aa25.81■■□□□ 1.72
PHGDH-211ENST00000641213 CUL7Q14999 1698 aa25.8■■□□□ 1.72
PHGDH-211ENST00000641213 PDS5BQ9NTI5 1447 aa25.78■■□□□ 1.72
PHGDH-211ENST00000641213 KANK4Q5T7N3 995 aaPredicted RBP25.78■■□□□ 1.72
PHGDH-211ENST00000641213 CTTNBP2Q8WZ74 1663 aa25.71■■□□□ 1.71
PHGDH-211ENST00000641213 ABCA5Q8WWZ7 1642 aa25.7■■□□□ 1.7
PHGDH-211ENST00000641213 MAP3K1Q13233 1512 aa25.66■■□□□ 1.7
PHGDH-211ENST00000641213 TIAM1Q13009 1591 aa25.65■■□□□ 1.7
PHGDH-211ENST00000641213 RRBP1Q9P2E9 1410 aaKnown RBP25.64■■□□□ 1.7
PHGDH-211ENST00000641213 EFCAB5A4FU69 1503 aa25.59■■□□□ 1.69
PHGDH-211ENST00000641213 TDRD9Q8NDG6 1382 aaKnown RBP25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms