RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 NISCHQ9Y2I1 1504 aa30.88■■■□□ 2.53
SNHG1-216ENST00000541416 ABCC9O60706 1549 aa28■■■□□ 2.07
SNHG1-216ENST00000541416 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
SNHG1-216ENST00000541416 RB1CC1Q8TDY2 1594 aa26.63■■□□□ 1.85
SNHG1-216ENST00000541416 NACADO15069 1562 aa26.39■■□□□ 1.82
SNHG1-216ENST00000541416 DNAJC5BQ9UF47 199 aa26.37■■□□□ 1.81
SNHG1-216ENST00000541416 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
SNHG1-216ENST00000541416 PABPN1Q86U42 306 aaKnown RBP eCLIP26.02■■□□□ 1.76
SNHG1-216ENST00000541416 MYO15BQ96JP2 1530 aa25.96■■□□□ 1.75
SNHG1-216ENST00000541416 UNC13AQ9UPW8 1703 aa25.93■■□□□ 1.74
SNHG1-216ENST00000541416 BICRAQ9NZM4 1560 aa25.75■■□□□ 1.71
SNHG1-216ENST00000541416 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
SNHG1-216ENST00000541416 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
SNHG1-216ENST00000541416 DCAF1Q9Y4B6 1507 aa25.53■■□□□ 1.68
SNHG1-216ENST00000541416 SCRIBQ14160 1630 aa25.31■■□□□ 1.64
SNHG1-216ENST00000541416 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
SNHG1-216ENST00000541416 CECR2Q9BXF3 1484 aa25.28■■□□□ 1.64
SNHG1-216ENST00000541416 EIF4G1Q04637 1599 aaKnown RBP25.2■■□□□ 1.62
SNHG1-216ENST00000541416 DNAJC5Q9H3Z4 198 aa24.49■■□□□ 1.51
SNHG1-216ENST00000541416 NCAPD3P42695 1498 aa24.33■■□□□ 1.49
SNHG1-216ENST00000541416 CUX2O14529 1486 aa24.3■■□□□ 1.48
SNHG1-216ENST00000541416 ERCC6Q03468 1493 aa24.28■■□□□ 1.48
SNHG1-216ENST00000541416 ATAD2BQ9ULI0 1458 aa24.21■■□□□ 1.47
SNHG1-216ENST00000541416 SMARCA2P51531 1590 aa24.2■■□□□ 1.46
SNHG1-216ENST00000541416 HMGXB3Q12766 1538 aa24.15■■□□□ 1.46
SNHG1-216ENST00000541416 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
SNHG1-216ENST00000541416 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
SNHG1-216ENST00000541416 BAZ1BQ9UIG0 1483 aaKnown RBP24.01■■□□□ 1.43
SNHG1-216ENST00000541416 NESP48681 1621 aa23.95■■□□□ 1.42
SNHG1-216ENST00000541416 PEG3Q9GZU2 1588 aa23.91■■□□□ 1.42
SNHG1-216ENST00000541416 LAMC3Q9Y6N6 1575 aa23.86■■□□□ 1.41
SNHG1-216ENST00000541416 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
SNHG1-216ENST00000541416 PDS5BQ9NTI5 1447 aa23.76■■□□□ 1.39
SNHG1-216ENST00000541416 MROH2BQ7Z745 1585 aa23.74■■□□□ 1.39
SNHG1-216ENST00000541416 KIF21AQ7Z4S6 1674 aa23.67■■□□□ 1.38
SNHG1-216ENST00000541416 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
SNHG1-216ENST00000541416 MRC2Q9UBG0 1479 aa23.51■■□□□ 1.35
SNHG1-216ENST00000541416 WIZO95785 1651 aa23.45■■□□□ 1.34
SNHG1-216ENST00000541416 WDR62O43379 1518 aa23.44■■□□□ 1.34
SNHG1-216ENST00000541416 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
SNHG1-216ENST00000541416 TRIM41Q8WV44 630 aa23.34■■□□□ 1.33
SNHG1-216ENST00000541416 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
SNHG1-216ENST00000541416 CFTRP13569 1480 aa23.27■■□□□ 1.32
SNHG1-216ENST00000541416 RSF1Q96T23 1441 aaPredicted RBP23.2■■□□□ 1.3
SNHG1-216ENST00000541416 TOP2AP11388 1531 aaKnown RBP23.19■■□□□ 1.3
SNHG1-216ENST00000541416 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
SNHG1-216ENST00000541416 URB2Q14146 1524 aaKnown RBP23.09■■□□□ 1.29
SNHG1-216ENST00000541416 PRDM2Q13029 1718 aa23.04■■□□□ 1.28
SNHG1-216ENST00000541416 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
SNHG1-216ENST00000541416 CCDC88BA6NC98 1476 aa22.9■■□□□ 1.26
SNHG1-216ENST00000541416 ABCC8Q09428 1581 aa22.88■■□□□ 1.25
SNHG1-216ENST00000541416 TOPBP1Q92547 1522 aa22.83■■□□□ 1.25
SNHG1-216ENST00000541416 ZNF608Q9ULD9 1512 aaPredicted RBP22.83■■□□□ 1.25
SNHG1-216ENST00000541416 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
SNHG1-216ENST00000541416 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
SNHG1-216ENST00000541416 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
SNHG1-216ENST00000541416 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
SNHG1-216ENST00000541416 EIF4G3O43432 1585 aaKnown RBP22.74■■□□□ 1.23
SNHG1-216ENST00000541416 ARHGEF11O15085 1522 aa22.73■■□□□ 1.23
SNHG1-216ENST00000541416 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.21
SNHG1-216ENST00000541416 AQRO60306 1485 aaKnown RBP eCLIP22.62■■□□□ 1.214e-14■■■■■ 43.1
SNHG1-216ENST00000541416 CHD1O14646 1710 aa22.6■■□□□ 1.21
SNHG1-216ENST00000541416 FBLN2P98095 1184 aa22.6■■□□□ 1.21
SNHG1-216ENST00000541416 CYB5RLQ6IPT4 315 aa22.6■■□□□ 1.21
SNHG1-216ENST00000541416 POLA1P09884 1462 aaPredicted RBP22.59■■□□□ 1.21
SNHG1-216ENST00000541416 SOGA1O94964 1423 aa22.51■■□□□ 1.19
SNHG1-216ENST00000541416 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
SNHG1-216ENST00000541416 TRHP20396 242 aaPredicted RBP22.48■■□□□ 1.19
SNHG1-216ENST00000541416 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
SNHG1-216ENST00000541416 ARAP1Q96P48 1450 aa22.47■■□□□ 1.19
SNHG1-216ENST00000541416 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
SNHG1-216ENST00000541416 CHMP7Q8WUX9 453 aaPredicted RBP22.42■■□□□ 1.18
SNHG1-216ENST00000541416 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
SNHG1-216ENST00000541416 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
SNHG1-216ENST00000541416 MAGI1Q96QZ7 1491 aaPredicted RBP22.4■■□□□ 1.18
SNHG1-216ENST00000541416 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
SNHG1-216ENST00000541416 GRIN2BQ13224 1484 aa22.35■■□□□ 1.17
SNHG1-216ENST00000541416 CUX1P39880 1505 aa22.34■■□□□ 1.17
SNHG1-216ENST00000541416 CLASP1Q7Z460 1538 aa22.33■■□□□ 1.17
SNHG1-216ENST00000541416 SYNJ2O15056 1496 aa22.3■■□□□ 1.16
SNHG1-216ENST00000541416 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
SNHG1-216ENST00000541416 PBRM1Q86U86 1689 aa22.22■■□□□ 1.15
SNHG1-216ENST00000541416 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
SNHG1-216ENST00000541416 ABCA5Q8WWZ7 1642 aa22.13■■□□□ 1.13
SNHG1-216ENST00000541416 WRNQ14191 1432 aaPredicted RBP eCLIP22.08■■□□□ 1.13
SNHG1-216ENST00000541416 GRIN2AQ12879 1464 aa22.05■■□□□ 1.12
SNHG1-216ENST00000541416 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
SNHG1-216ENST00000541416 AEBP2Q6ZN18 517 aaPredicted RBP22.03■■□□□ 1.12
SNHG1-216ENST00000541416 ADAMTS12P58397 1594 aa21.99■■□□□ 1.11
SNHG1-216ENST00000541416 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
SNHG1-216ENST00000541416 NUP160Q12769 1436 aa21.97■■□□□ 1.11
SNHG1-216ENST00000541416 TOP2BQ02880 1626 aa21.96■■□□□ 1.11
SNHG1-216ENST00000541416 BIVM-ERCC5R4GMW8 1640 aa21.95■■□□□ 1.1
SNHG1-216ENST00000541416 CEP170Q5SW79 1584 aa21.94■■□□□ 1.1
SNHG1-216ENST00000541416 ERICH3Q5RHP9 1530 aa21.91■■□□□ 1.1
SNHG1-216ENST00000541416 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
SNHG1-216ENST00000541416 SHROOM2Q13796 1616 aa21.88■■□□□ 1.09
SNHG1-216ENST00000541416 PRG4Q92954 1404 aaPredicted RBP21.79■■□□□ 1.08
SNHG1-216ENST00000541416 JPH4Q96JJ6 628 aa21.78■■□□□ 1.08
SNHG1-216ENST00000541416 NPM1P06748 294 aaKnown RBP eCLIP21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms