RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 NISCHQ9Y2I1 1504 aa17.13■□□□□ 0.33
SNHG1-209ENST00000538654 SLC24A1O60721 1099 aa16.68■□□□□ 0.26
SNHG1-209ENST00000538654 EHMT2Q96KQ7 1210 aa15.86■□□□□ 0.13
SNHG1-209ENST00000538654 CHIC1Q5VXU3 224 aa15.57■□□□□ 0.08
SNHG1-209ENST00000538654 PLPPR3Q6T4P5 718 aa15.56■□□□□ 0.08
SNHG1-209ENST00000538654 AEBP2Q6ZN18 517 aaPredicted RBP15.34■□□□□ 0.05
SNHG1-209ENST00000538654 RTN4Q9NQC3 1192 aaKnown RBP15.22■□□□□ 0.03
SNHG1-209ENST00000538654 HRCP23327 699 aa15.12■□□□□ 0.01
SNHG1-209ENST00000538654 DAXXQ9UER7 740 aaPredicted RBP14.92□□□□□ -0.02
SNHG1-209ENST00000538654 SHROOM4Q9ULL8 1493 aa14.85□□□□□ -0.03
SNHG1-209ENST00000538654 PRKCSHP14314 528 aaPredicted RBP14.84□□□□□ -0.03
SNHG1-209ENST00000538654 SUPT5HO00267 1087 aaKnown RBP14.82□□□□□ -0.04
SNHG1-209ENST00000538654 PELP1Q8IZL8 1130 aaKnown RBP14.73□□□□□ -0.05
SNHG1-209ENST00000538654 MYO15BQ96JP2 1530 aa14.71□□□□□ -0.05
SNHG1-209ENST00000538654 PCGF6Q9BYE7 350 aa14.71□□□□□ -0.05
SNHG1-209ENST00000538654 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
SNHG1-209ENST00000538654 KCNA4P22459 653 aa14.63□□□□□ -0.07
SNHG1-209ENST00000538654 DCAF1Q9Y4B6 1507 aa14.62□□□□□ -0.07
SNHG1-209ENST00000538654 ZCCHC6Q5VYS8 1495 aaKnown RBP14.59□□□□□ -0.07
SNHG1-209ENST00000538654 PPARGC1BQ86YN6 1023 aaKnown RBP14.59□□□□□ -0.07
SNHG1-209ENST00000538654 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
SNHG1-209ENST00000538654 CCDC180Q9P1Z9 1646 aa14.46□□□□□ -0.09
SNHG1-209ENST00000538654 TRIM26Q12899 539 aaPredicted RBP14.4□□□□□ -0.1
SNHG1-209ENST00000538654 ZEB1P37275 1124 aaPredicted RBP14.39□□□□□ -0.11
SNHG1-209ENST00000538654 PHF23Q9BUL5 403 aaPredicted RBP14.38□□□□□ -0.11
SNHG1-209ENST00000538654 TIMELESSQ9UNS1 1208 aa14.36□□□□□ -0.11
SNHG1-209ENST00000538654 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
SNHG1-209ENST00000538654 MYT1Q01538 1121 aa14.24□□□□□ -0.13
SNHG1-209ENST00000538654 APLP2Q06481 763 aa14.23□□□□□ -0.13
SNHG1-209ENST00000538654 LOC105371045A0A1W2PR82 267 aa14.21□□□□□ -0.14
SNHG1-209ENST00000538654 SCAF1Q9H7N4 1312 aaKnown RBP14.19□□□□□ -0.14
SNHG1-209ENST00000538654 TULP1O00294 542 aaPredicted RBP14.14□□□□□ -0.15
SNHG1-209ENST00000538654 ERICH6Q7L0X2 663 aa13.99□□□□□ -0.17
SNHG1-209ENST00000538654 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
SNHG1-209ENST00000538654 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
SNHG1-209ENST00000538654 ARXQ96QS3 562 aa13.94□□□□□ -0.18
SNHG1-209ENST00000538654 ACIN1Q9UKV3 1341 aaKnown RBP13.94□□□□□ -0.18
SNHG1-209ENST00000538654 TAOK2Q9UL54 1235 aa13.94□□□□□ -0.18
SNHG1-209ENST00000538654 ABCC9O60706 1549 aa13.88□□□□□ -0.19
SNHG1-209ENST00000538654 TTBK1Q5TCY1 1321 aaPredicted RBP13.88□□□□□ -0.19
SNHG1-209ENST00000538654 CENPBP07199 599 aaPredicted RBP13.87□□□□□ -0.19
SNHG1-209ENST00000538654 TPRNQ4KMQ1 711 aa13.86□□□□□ -0.19
SNHG1-209ENST00000538654 TRIM41Q8WV44 630 aa13.83□□□□□ -0.2
SNHG1-209ENST00000538654 NEUROD1Q13562 356 aa13.82□□□□□ -0.2
SNHG1-209ENST00000538654 GTF3C3Q9Y5Q9 886 aa13.77□□□□□ -0.21
SNHG1-209ENST00000538654 DIEXFQ68CQ4 756 aaKnown RBP13.71□□□□□ -0.21
SNHG1-209ENST00000538654 PODXL2Q9NZ53 605 aa13.71□□□□□ -0.21
SNHG1-209ENST00000538654 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.21
SNHG1-209ENST00000538654 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.21
SNHG1-209ENST00000538654 CCER1Q8TC90 406 aaPredicted RBP13.7□□□□□ -0.22
SNHG1-209ENST00000538654 RANGAP1P46060 587 aaPredicted RBP13.69□□□□□ -0.22
SNHG1-209ENST00000538654 FAM9AQ8IZU1 332 aaPredicted RBP13.66□□□□□ -0.22
SNHG1-209ENST00000538654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.63□□□□□ -0.23
SNHG1-209ENST00000538654 HOMEZQ8IX15 550 aa13.62□□□□□ -0.23
SNHG1-209ENST00000538654 EIF5BO60841 1220 aaKnown RBP13.61□□□□□ -0.23
SNHG1-209ENST00000538654 SLC4A1APQ9BWU0 796 aaKnown RBP13.57□□□□□ -0.24
SNHG1-209ENST00000538654 BCANQ96GW7 911 aa13.55□□□□□ -0.24
SNHG1-209ENST00000538654 PLEKHG5O94827 1062 aa13.54□□□□□ -0.24
SNHG1-209ENST00000538654 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
SNHG1-209ENST00000538654 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
SNHG1-209ENST00000538654 WRNQ14191 1432 aaPredicted RBP eCLIP13.49□□□□□ -0.25
SNHG1-209ENST00000538654 HAP1P54257 671 aaPredicted RBP13.48□□□□□ -0.25
SNHG1-209ENST00000538654 PLCB2Q00722 1185 aa13.42□□□□□ -0.26
SNHG1-209ENST00000538654 CLSPNQ9HAW4 1339 aa13.39□□□□□ -0.27
SNHG1-209ENST00000538654 ZBTB22O15209 634 aa13.35□□□□□ -0.27
SNHG1-209ENST00000538654 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
SNHG1-209ENST00000538654 EIF4G1Q04637 1599 aaKnown RBP13.33□□□□□ -0.28
SNHG1-209ENST00000538654 CEP162Q5TB80 1403 aa13.32□□□□□ -0.28
SNHG1-209ENST00000538654 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
SNHG1-209ENST00000538654 MIER1Q8N108 512 aa13.3□□□□□ -0.28
SNHG1-209ENST00000538654 BAZ1AQ9NRL2 1556 aaPredicted RBP13.29□□□□□ -0.28
SNHG1-209ENST00000538654 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
SNHG1-209ENST00000538654 NPM2Q86SE8 214 aaKnown RBP13.28□□□□□ -0.28
SNHG1-209ENST00000538654 WIZO95785 1651 aa13.28□□□□□ -0.28
SNHG1-209ENST00000538654 ADRA2BP18089 450 aa13.27□□□□□ -0.29
SNHG1-209ENST00000538654 CECR2Q9BXF3 1484 aa13.26□□□□□ -0.29
SNHG1-209ENST00000538654 C14orf37Q86TY3 774 aa13.25□□□□□ -0.29
SNHG1-209ENST00000538654 EEA1Q15075 1411 aa13.25□□□□□ -0.29
SNHG1-209ENST00000538654 NACADO15069 1562 aa13.19□□□□□ -0.3
SNHG1-209ENST00000538654 CCDC88BA6NC98 1476 aa13.16□□□□□ -0.3
SNHG1-209ENST00000538654 ANP32EQ9BTT0 268 aa13.15□□□□□ -0.3
SNHG1-209ENST00000538654 SUPT16HQ9Y5B9 1047 aaKnown RBP13.15□□□□□ -0.31
SNHG1-209ENST00000538654 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
SNHG1-209ENST00000538654 ABCC8Q09428 1581 aa13.13□□□□□ -0.31
SNHG1-209ENST00000538654 TMEM132AQ24JP5 1023 aa13.12□□□□□ -0.31
SNHG1-209ENST00000538654 TOP2AP11388 1531 aaKnown RBP13.11□□□□□ -0.31
SNHG1-209ENST00000538654 UBTFP17480 764 aaKnown RBP13.1□□□□□ -0.31
SNHG1-209ENST00000538654 SOGA1O94964 1423 aa13.09□□□□□ -0.31
SNHG1-209ENST00000538654 FBLN2P98095 1184 aa13.08□□□□□ -0.32
SNHG1-209ENST00000538654 KDM2AQ9Y2K7 1162 aa13.07□□□□□ -0.32
SNHG1-209ENST00000538654 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
SNHG1-209ENST00000538654 HNRNPUL2Q1KMD3 747 aaKnown RBP13.06□□□□□ -0.32
SNHG1-209ENST00000538654 SMARCA2P51531 1590 aa13.04□□□□□ -0.32
SNHG1-209ENST00000538654 BCL11AQ9H165 835 aa13.03□□□□□ -0.32
SNHG1-209ENST00000538654 KIF21BO75037 1637 aa13.02□□□□□ -0.32
SNHG1-209ENST00000538654 CEP164Q9UPV0 1460 aa13.01□□□□□ -0.33
SNHG1-209ENST00000538654 VPS8Q8N3P4 1428 aa13□□□□□ -0.33
SNHG1-209ENST00000538654 FKBP8Q14318 412 aa13□□□□□ -0.33
SNHG1-209ENST00000538654 RUSC2Q8N2Y8 1516 aa12.98□□□□□ -0.33
SNHG1-209ENST00000538654 CLIP1P30622 1438 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms