RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	NISCH	Q9Y2I1	1504 aa		17.13	■□□□□ 0.33
SNHG1-209	ENST00000538654	SLC24A1	O60721	1099 aa		16.68	■□□□□ 0.26
SNHG1-209	ENST00000538654	EHMT2	Q96KQ7	1210 aa		15.86	■□□□□ 0.13
SNHG1-209	ENST00000538654	CHIC1	Q5VXU3	224 aa		15.57	■□□□□ 0.08
SNHG1-209	ENST00000538654	PLPPR3	Q6T4P5	718 aa		15.56	■□□□□ 0.08
SNHG1-209	ENST00000538654	AEBP2	Q6ZN18	517 aa	Predicted RBP	15.34	■□□□□ 0.05
SNHG1-209	ENST00000538654	RTN4	Q9NQC3	1192 aa	Known RBP	15.22	■□□□□ 0.03
SNHG1-209	ENST00000538654	HRC	P23327	699 aa		15.12	■□□□□ 0.01
SNHG1-209	ENST00000538654	DAXX	Q9UER7	740 aa	Predicted RBP	14.92	□□□□□ -0.02
SNHG1-209	ENST00000538654	SHROOM4	Q9ULL8	1493 aa		14.85	□□□□□ -0.03
SNHG1-209	ENST00000538654	PRKCSH	P14314	528 aa	Predicted RBP	14.84	□□□□□ -0.03
SNHG1-209	ENST00000538654	SUPT5H	O00267	1087 aa	Known RBP	14.82	□□□□□ -0.04
SNHG1-209	ENST00000538654	PELP1	Q8IZL8	1130 aa	Known RBP	14.73	□□□□□ -0.05
SNHG1-209	ENST00000538654	MYO15B	Q96JP2	1530 aa		14.71	□□□□□ -0.05
SNHG1-209	ENST00000538654	PCGF6	Q9BYE7	350 aa		14.71	□□□□□ -0.05
SNHG1-209	ENST00000538654	NCBP3	Q53F19	620 aa	Known RBP	14.68	□□□□□ -0.06
SNHG1-209	ENST00000538654	KCNA4	P22459	653 aa		14.63	□□□□□ -0.07
SNHG1-209	ENST00000538654	DCAF1	Q9Y4B6	1507 aa		14.62	□□□□□ -0.07
SNHG1-209	ENST00000538654	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.59	□□□□□ -0.07
SNHG1-209	ENST00000538654	PPARGC1B	Q86YN6	1023 aa	Known RBP	14.59	□□□□□ -0.07
SNHG1-209	ENST00000538654	CSRNP3	Q8WYN3	585 aa		14.48	□□□□□ -0.09
SNHG1-209	ENST00000538654	CCDC180	Q9P1Z9	1646 aa		14.46	□□□□□ -0.09
SNHG1-209	ENST00000538654	TRIM26	Q12899	539 aa	Predicted RBP	14.4	□□□□□ -0.1
SNHG1-209	ENST00000538654	ZEB1	P37275	1124 aa	Predicted RBP	14.39	□□□□□ -0.11
SNHG1-209	ENST00000538654	PHF23	Q9BUL5	403 aa	Predicted RBP	14.38	□□□□□ -0.11
SNHG1-209	ENST00000538654	TIMELESS	Q9UNS1	1208 aa		14.36	□□□□□ -0.11
SNHG1-209	ENST00000538654	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.36	□□□□□ -0.11
SNHG1-209	ENST00000538654	MYT1	Q01538	1121 aa		14.24	□□□□□ -0.13
SNHG1-209	ENST00000538654	APLP2	Q06481	763 aa		14.23	□□□□□ -0.13
SNHG1-209	ENST00000538654	LOC105371045	A0A1W2PR82	267 aa		14.21	□□□□□ -0.14
SNHG1-209	ENST00000538654	SCAF1	Q9H7N4	1312 aa	Known RBP	14.19	□□□□□ -0.14
SNHG1-209	ENST00000538654	TULP1	O00294	542 aa	Predicted RBP	14.14	□□□□□ -0.15
SNHG1-209	ENST00000538654	ERICH6	Q7L0X2	663 aa		13.99	□□□□□ -0.17
SNHG1-209	ENST00000538654	DCAF8L2	P0C7V8	631 aa		13.98	□□□□□ -0.17
SNHG1-209	ENST00000538654	KLHL34	Q8N239	644 aa		13.94	□□□□□ -0.18
SNHG1-209	ENST00000538654	ARX	Q96QS3	562 aa		13.94	□□□□□ -0.18
SNHG1-209	ENST00000538654	ACIN1	Q9UKV3	1341 aa	Known RBP	13.94	□□□□□ -0.18
SNHG1-209	ENST00000538654	TAOK2	Q9UL54	1235 aa		13.94	□□□□□ -0.18
SNHG1-209	ENST00000538654	ABCC9	O60706	1549 aa		13.88	□□□□□ -0.19
SNHG1-209	ENST00000538654	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.88	□□□□□ -0.19
SNHG1-209	ENST00000538654	CENPB	P07199	599 aa	Predicted RBP	13.87	□□□□□ -0.19
SNHG1-209	ENST00000538654	TPRN	Q4KMQ1	711 aa		13.86	□□□□□ -0.19
SNHG1-209	ENST00000538654	TRIM41	Q8WV44	630 aa		13.83	□□□□□ -0.2
SNHG1-209	ENST00000538654	NEUROD1	Q13562	356 aa		13.82	□□□□□ -0.2
SNHG1-209	ENST00000538654	GTF3C3	Q9Y5Q9	886 aa		13.77	□□□□□ -0.21
SNHG1-209	ENST00000538654	DIEXF	Q68CQ4	756 aa	Known RBP	13.71	□□□□□ -0.21
SNHG1-209	ENST00000538654	PODXL2	Q9NZ53	605 aa		13.71	□□□□□ -0.21
SNHG1-209	ENST00000538654	RSF1	Q96T23	1441 aa	Predicted RBP	13.71	□□□□□ -0.21
SNHG1-209	ENST00000538654	RB1CC1	Q8TDY2	1594 aa		13.71	□□□□□ -0.21
SNHG1-209	ENST00000538654	CCER1	Q8TC90	406 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG1-209	ENST00000538654	RANGAP1	P46060	587 aa	Predicted RBP	13.69	□□□□□ -0.22
SNHG1-209	ENST00000538654	FAM9A	Q8IZU1	332 aa	Predicted RBP	13.66	□□□□□ -0.22
SNHG1-209	ENST00000538654	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.63	□□□□□ -0.23
SNHG1-209	ENST00000538654	HOMEZ	Q8IX15	550 aa		13.62	□□□□□ -0.23
SNHG1-209	ENST00000538654	EIF5B	O60841	1220 aa	Known RBP	13.61	□□□□□ -0.23
SNHG1-209	ENST00000538654	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.57	□□□□□ -0.24
SNHG1-209	ENST00000538654	BCAN	Q96GW7	911 aa		13.55	□□□□□ -0.24
SNHG1-209	ENST00000538654	PLEKHG5	O94827	1062 aa		13.54	□□□□□ -0.24
SNHG1-209	ENST00000538654	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.5	□□□□□ -0.25
SNHG1-209	ENST00000538654	SCRIB	Q14160	1630 aa		13.5	□□□□□ -0.25
SNHG1-209	ENST00000538654	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.49	□□□□□ -0.25
SNHG1-209	ENST00000538654	HAP1	P54257	671 aa	Predicted RBP	13.48	□□□□□ -0.25
SNHG1-209	ENST00000538654	PLCB2	Q00722	1185 aa		13.42	□□□□□ -0.26
SNHG1-209	ENST00000538654	CLSPN	Q9HAW4	1339 aa		13.39	□□□□□ -0.27
SNHG1-209	ENST00000538654	ZBTB22	O15209	634 aa		13.35	□□□□□ -0.27
SNHG1-209	ENST00000538654	YTHDC1	Q96MU7	727 aa	Known RBP	13.35	□□□□□ -0.27
SNHG1-209	ENST00000538654	EIF4G1	Q04637	1599 aa	Known RBP	13.33	□□□□□ -0.28
SNHG1-209	ENST00000538654	CEP162	Q5TB80	1403 aa		13.32	□□□□□ -0.28
SNHG1-209	ENST00000538654	MROH2B	Q7Z745	1585 aa		13.3	□□□□□ -0.28
SNHG1-209	ENST00000538654	MIER1	Q8N108	512 aa		13.3	□□□□□ -0.28
SNHG1-209	ENST00000538654	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.29	□□□□□ -0.28
SNHG1-209	ENST00000538654	TNIK	Q9UKE5	1360 aa		13.29	□□□□□ -0.28
SNHG1-209	ENST00000538654	NPM2	Q86SE8	214 aa	Known RBP	13.28	□□□□□ -0.28
SNHG1-209	ENST00000538654	WIZ	O95785	1651 aa		13.28	□□□□□ -0.28
SNHG1-209	ENST00000538654	ADRA2B	P18089	450 aa		13.27	□□□□□ -0.29
SNHG1-209	ENST00000538654	CECR2	Q9BXF3	1484 aa		13.26	□□□□□ -0.29
SNHG1-209	ENST00000538654	C14orf37	Q86TY3	774 aa		13.25	□□□□□ -0.29
SNHG1-209	ENST00000538654	EEA1	Q15075	1411 aa		13.25	□□□□□ -0.29
SNHG1-209	ENST00000538654	NACAD	O15069	1562 aa		13.19	□□□□□ -0.3
SNHG1-209	ENST00000538654	CCDC88B	A6NC98	1476 aa		13.16	□□□□□ -0.3
SNHG1-209	ENST00000538654	ANP32E	Q9BTT0	268 aa		13.15	□□□□□ -0.3
SNHG1-209	ENST00000538654	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.15	□□□□□ -0.31
SNHG1-209	ENST00000538654	GOLGA3	Q08378	1498 aa		13.14	□□□□□ -0.31
SNHG1-209	ENST00000538654	ABCC8	Q09428	1581 aa		13.13	□□□□□ -0.31
SNHG1-209	ENST00000538654	TMEM132A	Q24JP5	1023 aa		13.12	□□□□□ -0.31
SNHG1-209	ENST00000538654	TOP2A	P11388	1531 aa	Known RBP	13.11	□□□□□ -0.31
SNHG1-209	ENST00000538654	UBTF	P17480	764 aa	Known RBP	13.1	□□□□□ -0.31
SNHG1-209	ENST00000538654	SOGA1	O94964	1423 aa		13.09	□□□□□ -0.31
SNHG1-209	ENST00000538654	FBLN2	P98095	1184 aa		13.08	□□□□□ -0.32
SNHG1-209	ENST00000538654	KDM2A	Q9Y2K7	1162 aa		13.07	□□□□□ -0.32
SNHG1-209	ENST00000538654	TSHZ2	Q9NRE2	1034 aa		13.07	□□□□□ -0.32
SNHG1-209	ENST00000538654	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.06	□□□□□ -0.32
SNHG1-209	ENST00000538654	SMARCA2	P51531	1590 aa		13.04	□□□□□ -0.32
SNHG1-209	ENST00000538654	BCL11A	Q9H165	835 aa		13.03	□□□□□ -0.32
SNHG1-209	ENST00000538654	KIF21B	O75037	1637 aa		13.02	□□□□□ -0.32
SNHG1-209	ENST00000538654	CEP164	Q9UPV0	1460 aa		13.01	□□□□□ -0.33
SNHG1-209	ENST00000538654	VPS8	Q8N3P4	1428 aa		13	□□□□□ -0.33
SNHG1-209	ENST00000538654	FKBP8	Q14318	412 aa		13	□□□□□ -0.33
SNHG1-209	ENST00000538654	RUSC2	Q8N2Y8	1516 aa		12.98	□□□□□ -0.33
SNHG1-209	ENST00000538654	CLIP1	P30622	1438 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms