RNA–Protein interactions for RNA: ENST00000343304.10

LRRC41-201, Transcript of leucine rich repeat containing 41, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC41, Length 2,947 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC41-201ENST00000343304 NISCHQ9Y2I1 1504 aa31.46■■■□□ 2.63
LRRC41-201ENST00000343304 CCDC180Q9P1Z9 1646 aa27.69■■■□□ 2.02
LRRC41-201ENST00000343304 ZCCHC6Q5VYS8 1495 aaKnown RBP26.46■■□□□ 1.83
LRRC41-201ENST00000343304 DCAF1Q9Y4B6 1507 aa26.29■■□□□ 1.8
LRRC41-201ENST00000343304 MYO15BQ96JP2 1530 aa26.08■■□□□ 1.77
LRRC41-201ENST00000343304 SHROOM4Q9ULL8 1493 aa25.89■■□□□ 1.74
LRRC41-201ENST00000343304 NACADO15069 1562 aa25.74■■□□□ 1.71
LRRC41-201ENST00000343304 ABCC9O60706 1549 aa25.7■■□□□ 1.71
LRRC41-201ENST00000343304 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
LRRC41-201ENST00000343304 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.67
LRRC41-201ENST00000343304 DCAF8L2P0C7V8 631 aa25.4■■□□□ 1.66
LRRC41-201ENST00000343304 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
LRRC41-201ENST00000343304 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
LRRC41-201ENST00000343304 UNC13AQ9UPW8 1703 aa24.84■■□□□ 1.57
LRRC41-201ENST00000343304 BICRAQ9NZM4 1560 aa24.59■■□□□ 1.53
LRRC41-201ENST00000343304 BAZ1AQ9NRL2 1556 aaPredicted RBP24.36■■□□□ 1.49
LRRC41-201ENST00000343304 RSF1Q96T23 1441 aaPredicted RBP24.28■■□□□ 1.48
LRRC41-201ENST00000343304 CECR2Q9BXF3 1484 aa24.22■■□□□ 1.47
LRRC41-201ENST00000343304 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
LRRC41-201ENST00000343304 HRCP23327 699 aa24.19■■□□□ 1.46
LRRC41-201ENST00000343304 MROH2BQ7Z745 1585 aa24.16■■□□□ 1.46
LRRC41-201ENST00000343304 PEG3Q9GZU2 1588 aa24.1■■□□□ 1.45
LRRC41-201ENST00000343304 PABPN1Q86U42 306 aaKnown RBP eCLIP24.07■■□□□ 1.44
LRRC41-201ENST00000343304 PCGF6Q9BYE7 350 aa24.04■■□□□ 1.44
LRRC41-201ENST00000343304 LOC105371045A0A1W2PR82 267 aa24.03■■□□□ 1.44
LRRC41-201ENST00000343304 WIZO95785 1651 aa23.94■■□□□ 1.42
LRRC41-201ENST00000343304 SMARCA2P51531 1590 aa23.89■■□□□ 1.41
LRRC41-201ENST00000343304 TOP2AP11388 1531 aaKnown RBP23.88■■□□□ 1.41
LRRC41-201ENST00000343304 EIF4G1Q04637 1599 aaKnown RBP23.84■■□□□ 1.41
LRRC41-201ENST00000343304 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
LRRC41-201ENST00000343304 ATAD2BQ9ULI0 1458 aa23.77■■□□□ 1.4
LRRC41-201ENST00000343304 TRIM26Q12899 539 aaPredicted RBP23.74■■□□□ 1.39
LRRC41-201ENST00000343304 HMGXB3Q12766 1538 aa23.72■■□□□ 1.39
LRRC41-201ENST00000343304 NCAPD3P42695 1498 aa23.69■■□□□ 1.38
LRRC41-201ENST00000343304 BAZ1BQ9UIG0 1483 aaKnown RBP23.6■■□□□ 1.37
LRRC41-201ENST00000343304 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
LRRC41-201ENST00000343304 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
LRRC41-201ENST00000343304 FAM9AQ8IZU1 332 aaPredicted RBP23.46■■□□□ 1.35
LRRC41-201ENST00000343304 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.34
LRRC41-201ENST00000343304 ZEB1P37275 1124 aaPredicted RBP23.33■■□□□ 1.33
LRRC41-201ENST00000343304 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
LRRC41-201ENST00000343304 EHMT2Q96KQ7 1210 aa23.12■■□□□ 1.29
LRRC41-201ENST00000343304 CFTRP13569 1480 aa23.1■■□□□ 1.29
LRRC41-201ENST00000343304 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
LRRC41-201ENST00000343304 EEA1Q15075 1411 aa22.99■■□□□ 1.27
LRRC41-201ENST00000343304 CADPSQ9ULU8 1353 aa22.97■■□□□ 1.27
LRRC41-201ENST00000343304 WRNQ14191 1432 aaPredicted RBP eCLIP22.94■■□□□ 1.265e-7■□□□□ 10
LRRC41-201ENST00000343304 LAMC3Q9Y6N6 1575 aa22.93■■□□□ 1.26
LRRC41-201ENST00000343304 TNIKQ9UKE5 1360 aa22.89■■□□□ 1.26
LRRC41-201ENST00000343304 SOGA1O94964 1423 aa22.88■■□□□ 1.25
LRRC41-201ENST00000343304 CSRNP3Q8WYN3 585 aa22.84■■□□□ 1.25
LRRC41-201ENST00000343304 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
LRRC41-201ENST00000343304 BIVM-ERCC5R4GMW8 1640 aa22.84■■□□□ 1.25
LRRC41-201ENST00000343304 TOP2BQ02880 1626 aa22.81■■□□□ 1.24
LRRC41-201ENST00000343304 RUSC2Q8N2Y8 1516 aa22.74■■□□□ 1.23
LRRC41-201ENST00000343304 SYNJ1O43426 1573 aa22.74■■□□□ 1.23
LRRC41-201ENST00000343304 GOLGA3Q08378 1498 aa22.73■■□□□ 1.23
LRRC41-201ENST00000343304 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
LRRC41-201ENST00000343304 UBTFP17480 764 aaKnown RBP22.66■■□□□ 1.22
LRRC41-201ENST00000343304 PDS5BQ9NTI5 1447 aa22.66■■□□□ 1.22
LRRC41-201ENST00000343304 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.21
LRRC41-201ENST00000343304 CUX1P39880 1505 aa22.63■■□□□ 1.21
LRRC41-201ENST00000343304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.62■■□□□ 1.21
LRRC41-201ENST00000343304 CEP164Q9UPV0 1460 aa22.62■■□□□ 1.21
LRRC41-201ENST00000343304 KIF21BO75037 1637 aa22.61■■□□□ 1.21
LRRC41-201ENST00000343304 DNAJC5BQ9UF47 199 aa22.58■■□□□ 1.21
LRRC41-201ENST00000343304 DNMBPQ6XZF7 1577 aa22.58■■□□□ 1.2
LRRC41-201ENST00000343304 NESP48681 1621 aa22.55■■□□□ 1.2
LRRC41-201ENST00000343304 KIF21AQ7Z4S6 1674 aa22.45■■□□□ 1.18
LRRC41-201ENST00000343304 TOPBP1Q92547 1522 aa22.44■■□□□ 1.18
LRRC41-201ENST00000343304 CLIP1P30622 1438 aa22.43■■□□□ 1.18
LRRC41-201ENST00000343304 TTBK1Q5TCY1 1321 aaPredicted RBP22.41■■□□□ 1.18
LRRC41-201ENST00000343304 VPS8Q8N3P4 1428 aa22.37■■□□□ 1.17
LRRC41-201ENST00000343304 FGD5Q6ZNL6 1462 aa22.37■■□□□ 1.17
LRRC41-201ENST00000343304 URB2Q14146 1524 aaKnown RBP22.37■■□□□ 1.17
LRRC41-201ENST00000343304 MRC2Q9UBG0 1479 aa22.35■■□□□ 1.17
LRRC41-201ENST00000343304 RAPGEF2Q9Y4G8 1499 aa22.35■■□□□ 1.17
LRRC41-201ENST00000343304 KIF27Q86VH2 1401 aa22.34■■□□□ 1.17
LRRC41-201ENST00000343304 ABCA10Q8WWZ4 1543 aa22.33■■□□□ 1.16
LRRC41-201ENST00000343304 WDR62O43379 1518 aa22.31■■□□□ 1.16
LRRC41-201ENST00000343304 POLA1P09884 1462 aaPredicted RBP22.3■■□□□ 1.16
LRRC41-201ENST00000343304 WDR97A6NE52 1622 aa22.3■■□□□ 1.16
LRRC41-201ENST00000343304 ERICH3Q5RHP9 1530 aa22.27■■□□□ 1.16
LRRC41-201ENST00000343304 APLP2Q06481 763 aa22.23■■□□□ 1.15
LRRC41-201ENST00000343304 PRXQ9BXM0 1461 aa22.23■■□□□ 1.15
LRRC41-201ENST00000343304 DIEXFQ68CQ4 756 aaKnown RBP22.23■■□□□ 1.15
LRRC41-201ENST00000343304 THOC2Q8NI27 1593 aaKnown RBP22.2■■□□□ 1.14
LRRC41-201ENST00000343304 SCAF1Q9H7N4 1312 aaKnown RBP22.19■■□□□ 1.14
LRRC41-201ENST00000343304 TARBP1Q13395 1621 aaKnown RBP22.18■■□□□ 1.14
LRRC41-201ENST00000343304 CUX2O14529 1486 aa22.17■■□□□ 1.14
LRRC41-201ENST00000343304 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
LRRC41-201ENST00000343304 ERCC6Q03468 1493 aa22.14■■□□□ 1.13
LRRC41-201ENST00000343304 CUL7Q14999 1698 aa22.13■■□□□ 1.13
LRRC41-201ENST00000343304 IFT140Q96RY7 1462 aa22.12■■□□□ 1.13
LRRC41-201ENST00000343304 ZNF316A6NFI3 1004 aaPredicted RBP22.12■■□□□ 1.13
LRRC41-201ENST00000343304 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
LRRC41-201ENST00000343304 ACIN1Q9UKV3 1341 aaKnown RBP22.08■■□□□ 1.13
LRRC41-201ENST00000343304 IGF1RP08069 1367 aa22.08■■□□□ 1.13
LRRC41-201ENST00000343304 RAD54L2Q9Y4B4 1467 aa22.08■■□□□ 1.12
LRRC41-201ENST00000343304 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms