Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SSUH2-203ENST00000413305 1874 ntTSL 1 (best)14.57□□□□□ -0.081e-6■□□□□ 9.7
DDX55Q8NHQ9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.966e-11■□□□□ 9.7
DDX55Q8NHQ9 ARID1A-212ENST00000636219 7058 ntAPPRIS ALT2 TSL 512.36□□□□□ -0.436e-11■□□□□ 9.7
DDX55Q8NHQ9 LRPPRC-206ENST00000463456 3549 ntTSL 25.32□□□□□ -1.563e-6■□□□□ 9.7
DDX55Q8NHQ9 LRPPRC-204ENST00000419884 888 ntTSL 54.95□□□□□ -1.623e-6■□□□□ 9.7
DDX55Q8NHQ9 COL18A1-206ENST00000459895 588 ntTSL 315.42■□□□□ 0.063e-12■□□□□ 9.7
DDX55Q8NHQ9 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.254e-9■□□□□ 9.7
DDX55Q8NHQ9 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.594e-9■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.093e-15■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-217ENST00000589228 4256 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.363e-15■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-201ENST00000358598 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.543e-15■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-214ENST00000588188 1209 ntTSL 3 BASIC9.84□□□□□ -0.833e-15■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-202ENST00000392710 3551 ntTSL 27.97□□□□□ -1.133e-15■□□□□ 9.7
DDX55Q8NHQ9 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.163e-15■□□□□ 9.7
DDX55Q8NHQ9 ERBB2-203ENST00000445658 3238 ntTSL 2 BASIC13.27□□□□□ -0.298e-10■□□□□ 9.7
DDX55Q8NHQ9 ERBB2-218ENST00000584450 3730 ntTSL 1 (best) BASIC12.36□□□□□ -0.438e-10■□□□□ 9.7
DDX55Q8NHQ9 NDUFAF8-202ENST00000573090 741 ntTSL 327.33■■□□□ 1.972e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-208ENST00000543465 1518 ntTSL 526.85■■□□□ 1.892e-7■□□□□ 9.7
DDX55Q8NHQ9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.852e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.19■■□□□ 1.622e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.52e-7■□□□□ 9.7
DDX55Q8NHQ9 GDF15-203ENST00000595973 890 ntTSL 523.44■■□□□ 1.342e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC23.06■■□□□ 1.282e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC22.61■■□□□ 1.212e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.8■■□□□ 1.082e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)20.18■□□□□ 0.822e-7■□□□□ 9.7
DDX55Q8NHQ9 PHB2-205ENST00000537646 874 ntTSL 519.15■□□□□ 0.662e-7■□□□□ 9.7
DDX55Q8NHQ9 NDUFAF8-205ENST00000576002 365 ntTSL 219.04■□□□□ 0.642e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-209ENST00000550482 832 ntTSL 218.38■□□□□ 0.532e-7■□□□□ 9.7
DDX55Q8NHQ9 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.482e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.02■□□□□ 0.482e-7■□□□□ 9.7
DDX55Q8NHQ9 PMM2-211ENST00000566540 1557 ntTSL 1 (best)17.73■□□□□ 0.432e-7■□□□□ 9.7
DDX55Q8NHQ9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.312e-7■□□□□ 9.7
DDX55Q8NHQ9 GDF15-204ENST00000597765 562 ntTSL 416.8■□□□□ 0.282e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.64■□□□□ 0.252e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.33■□□□□ 0.22e-7■□□□□ 9.7
DDX55Q8NHQ9 NDUFAF8-203ENST00000573173 709 ntTSL 216.05■□□□□ 0.162e-7■□□□□ 9.7
DDX55Q8NHQ9 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.142e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-201ENST00000223084 1295 ntTSL 215.38■□□□□ 0.052e-7■□□□□ 9.7
DDX55Q8NHQ9 KIAA0319L-202ENST00000373266 2377 ntTSL 5 BASIC14.37□□□□□ -0.112e-7■□□□□ 9.7
DDX55Q8NHQ9 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC14.16□□□□□ -0.142e-7■□□□□ 9.7
DDX55Q8NHQ9 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.262e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-206ENST00000547708 530 ntTSL 413.29□□□□□ -0.282e-7■□□□□ 9.7
DDX55Q8NHQ9 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.292e-7■□□□□ 9.7
DDX55Q8NHQ9 GDF15-205ENST00000604609 506 ntTSL 311.76□□□□□ -0.532e-7■□□□□ 9.7
DDX55Q8NHQ9 CDCA7-206ENST00000467411 3176 ntTSL 1 (best)11.53□□□□□ -0.562e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.572e-7■□□□□ 9.7
DDX55Q8NHQ9 CDCA7-201ENST00000306721 2789 ntTSL 2 BASIC11.44□□□□□ -0.582e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-202ENST00000409292 538 ntTSL 2 BASIC9.72□□□□□ -0.852e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC9.7□□□□□ -0.862e-7■□□□□ 9.7
DDX55Q8NHQ9 PMM2-217ENST00000570076 1002 ntTSL 29.21□□□□□ -0.942e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-210ENST00000480956 1736 ntTSL 38.7□□□□□ -1.022e-7■□□□□ 9.7
DDX55Q8NHQ9 HNRNPC-210ENST00000554417 691 ntTSL 28.66□□□□□ -1.022e-7■□□□□ 9.7
DDX55Q8NHQ9 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC8.33□□□□□ -1.082e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.15□□□□□ -1.262e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-206ENST00000409987 504 ntTSL 5 BASIC6.49□□□□□ -1.372e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-209ENST00000468872 636 ntTSL 26.49□□□□□ -1.372e-7■□□□□ 9.7
DDX55Q8NHQ9 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.64□□□□□ -1.512e-7■□□□□ 9.7
DDX55Q8NHQ9 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.015e-7■□□□□ 9.7
DDX55Q8NHQ9 RNF220-210ENST00000474394 810 ntTSL 313.06□□□□□ -0.326e-9■□□□□ 9.7
DDX55Q8NHQ9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.92■■■□□ 2.545e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-231ENST00000591097 1507 ntTSL 1 (best)28.23■■■□□ 2.117e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.12■■■□□ 2.097e-15■□□□□ 9.7
DDX55Q8NHQ9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.95■■■□□ 2.065e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.95■■■□□ 2.065e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.95■■■□□ 2.065e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.77■■■□□ 2.045e-8■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-206ENST00000468248 1181 ntTSL 526.65■■□□□ 1.865e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-207ENST00000557810 947 ntTSL 226.42■■□□□ 1.825e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-224ENST00000589686 532 ntTSL 225.73■■□□□ 1.717e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-229ENST00000590704 1456 ntTSL 225.37■■□□□ 1.657e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.37■■□□□ 1.657e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-226ENST00000590171 905 ntTSL 325.37■■□□□ 1.657e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC25.15■■□□□ 1.627e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-208ENST00000586548 1734 ntTSL 324.89■■□□□ 1.587e-15■□□□□ 9.7
DDX55Q8NHQ9 CDC37-207ENST00000589755 793 ntTSL 224.54■■□□□ 1.525e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.485e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC24.14■■□□□ 1.457e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC24■■□□□ 1.437e-15■□□□□ 9.7
DDX55Q8NHQ9 CDC37-210ENST00000593124 1389 ntTSL 523.48■■□□□ 1.355e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23.42■■□□□ 1.347e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-238ENST00000592412 532 ntTSL 423.12■■□□□ 1.297e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.88■■□□□ 1.257e-15■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.245e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.217e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.59■■□□□ 1.217e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-243ENST00000593128 796 ntTSL 322.29■■□□□ 1.167e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-244ENST00000593283 758 ntTSL 521.83■■□□□ 1.097e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.83■■□□□ 1.087e-15■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-207ENST00000498203 687 ntTSL 521.81■■□□□ 1.085e-8■□□□□ 9.7
DDX55Q8NHQ9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.035e-8■□□□□ 9.7
DDX55Q8NHQ9 CDC37-202ENST00000588498 690 ntTSL 321.48■■□□□ 1.035e-8■□□□□ 9.7
DDX55Q8NHQ9 CDC37-203ENST00000588869 966 ntTSL 520.86■□□□□ 0.935e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.875e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC20.41■□□□□ 0.865e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.847e-15■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-241ENST00000593048 650 ntTSL 320■□□□□ 0.797e-15■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-216ENST00000559017 849 ntTSL 519.84■□□□□ 0.775e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-237ENST00000561056 577 ntTSL 419.84■□□□□ 0.775e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-226ENST00000559796 476 ntTSL 419.79■□□□□ 0.765e-8■□□□□ 9.7
Retrieved 100 of 15,504 protein–RNA pairs in 84.4 ms