RNA–Protein interactions for RNA: ENST00000459895.1

COL18A1-206, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 3

Gene COL18A1, Length 588 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-206ENST00000459895 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
COL18A1-206ENST00000459895 CCDC180Q9P1Z9 1646 aa27.8■■■□□ 2.04
COL18A1-206ENST00000459895 ABCC9O60706 1549 aa26.84■■□□□ 1.89
COL18A1-206ENST00000459895 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
COL18A1-206ENST00000459895 RB1CC1Q8TDY2 1594 aa25.95■■□□□ 1.75
COL18A1-206ENST00000459895 NACADO15069 1562 aa25.94■■□□□ 1.74
COL18A1-206ENST00000459895 MYO15BQ96JP2 1530 aa25.84■■□□□ 1.73
COL18A1-206ENST00000459895 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.73
COL18A1-206ENST00000459895 DCAF8L2P0C7V8 631 aa25.68■■□□□ 1.7
COL18A1-206ENST00000459895 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
COL18A1-206ENST00000459895 SCRIBQ14160 1630 aa25.36■■□□□ 1.65
COL18A1-206ENST00000459895 BICRAQ9NZM4 1560 aa25.22■■□□□ 1.63
COL18A1-206ENST00000459895 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.594e-12■■■■□ 20.8
COL18A1-206ENST00000459895 SHROOM4Q9ULL8 1493 aa24.93■■□□□ 1.58
COL18A1-206ENST00000459895 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
COL18A1-206ENST00000459895 CC2D2AQ9P2K1 1620 aa24.35■■□□□ 1.49
COL18A1-206ENST00000459895 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
COL18A1-206ENST00000459895 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
COL18A1-206ENST00000459895 SMARCA4P51532 1647 aa24.25■■□□□ 1.47
COL18A1-206ENST00000459895 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
COL18A1-206ENST00000459895 MROH2BQ7Z745 1585 aa24.07■■□□□ 1.44
COL18A1-206ENST00000459895 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
COL18A1-206ENST00000459895 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
COL18A1-206ENST00000459895 ATAD2BQ9ULI0 1458 aa23.95■■□□□ 1.42
COL18A1-206ENST00000459895 HMGXB3Q12766 1538 aa23.91■■□□□ 1.42
COL18A1-206ENST00000459895 WIZO95785 1651 aa23.88■■□□□ 1.41
COL18A1-206ENST00000459895 NCAPD3P42695 1498 aa23.85■■□□□ 1.41
COL18A1-206ENST00000459895 BAZ1BQ9UIG0 1483 aaKnown RBP23.8■■□□□ 1.4
COL18A1-206ENST00000459895 RSF1Q96T23 1441 aaPredicted RBP23.78■■□□□ 1.4
COL18A1-206ENST00000459895 TOP2AP11388 1531 aaKnown RBP23.63■■□□□ 1.37
COL18A1-206ENST00000459895 NESP48681 1621 aa23.31■■□□□ 1.32
COL18A1-206ENST00000459895 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
COL18A1-206ENST00000459895 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
COL18A1-206ENST00000459895 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
COL18A1-206ENST00000459895 SUPT5HO00267 1087 aaKnown RBP23.19■■□□□ 1.3
COL18A1-206ENST00000459895 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
COL18A1-206ENST00000459895 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
COL18A1-206ENST00000459895 CFTRP13569 1480 aa23.11■■□□□ 1.29
COL18A1-206ENST00000459895 ERCC6Q03468 1493 aa23.1■■□□□ 1.29
COL18A1-206ENST00000459895 THOC2Q8NI27 1593 aaKnown RBP23.06■■□□□ 1.28
COL18A1-206ENST00000459895 PDS5BQ9NTI5 1447 aa23■■□□□ 1.27
COL18A1-206ENST00000459895 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
COL18A1-206ENST00000459895 CEP164Q9UPV0 1460 aa22.95■■□□□ 1.26
COL18A1-206ENST00000459895 MRC2Q9UBG0 1479 aa22.87■■□□□ 1.25
COL18A1-206ENST00000459895 WDR62O43379 1518 aa22.85■■□□□ 1.25
COL18A1-206ENST00000459895 CUX2O14529 1486 aa22.79■■□□□ 1.24
COL18A1-206ENST00000459895 URB2Q14146 1524 aaKnown RBP22.77■■□□□ 1.24
COL18A1-206ENST00000459895 DNMBPQ6XZF7 1577 aa22.7■■□□□ 1.22
COL18A1-206ENST00000459895 TOPBP1Q92547 1522 aa22.65■■□□□ 1.22
COL18A1-206ENST00000459895 CUX1P39880 1505 aa22.59■■□□□ 1.21
COL18A1-206ENST00000459895 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
COL18A1-206ENST00000459895 BIVM-ERCC5R4GMW8 1640 aa22.53■■□□□ 1.2
COL18A1-206ENST00000459895 SYNJ1O43426 1573 aa22.52■■□□□ 1.2
COL18A1-206ENST00000459895 POLA1P09884 1462 aaPredicted RBP22.47■■□□□ 1.19
COL18A1-206ENST00000459895 TOP2BQ02880 1626 aa22.47■■□□□ 1.19
COL18A1-206ENST00000459895 FGD5Q6ZNL6 1462 aa22.46■■□□□ 1.19
COL18A1-206ENST00000459895 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
COL18A1-206ENST00000459895 WDR97A6NE52 1622 aa22.45■■□□□ 1.18
COL18A1-206ENST00000459895 WRNQ14191 1432 aaPredicted RBP eCLIP22.43■■□□□ 1.18
COL18A1-206ENST00000459895 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
COL18A1-206ENST00000459895 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
COL18A1-206ENST00000459895 ZNF608Q9ULD9 1512 aaPredicted RBP22.34■■□□□ 1.17
COL18A1-206ENST00000459895 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
COL18A1-206ENST00000459895 ABCA5Q8WWZ7 1642 aa22.26■■□□□ 1.15
COL18A1-206ENST00000459895 SOGA1O94964 1423 aa22.25■■□□□ 1.15
COL18A1-206ENST00000459895 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
COL18A1-206ENST00000459895 ABCA10Q8WWZ4 1543 aa22.23■■□□□ 1.15
COL18A1-206ENST00000459895 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.148e-9■■■■■ 28.1
COL18A1-206ENST00000459895 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
COL18A1-206ENST00000459895 CHD1O14646 1710 aa22.09■■□□□ 1.13
COL18A1-206ENST00000459895 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
COL18A1-206ENST00000459895 SNAPC4Q5SXM2 1469 aa22.06■■□□□ 1.12
COL18A1-206ENST00000459895 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
COL18A1-206ENST00000459895 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
COL18A1-206ENST00000459895 MAGI1Q96QZ7 1491 aaPredicted RBP22■■□□□ 1.11
COL18A1-206ENST00000459895 ERICH3Q5RHP9 1530 aa21.98■■□□□ 1.11
COL18A1-206ENST00000459895 CUL7Q14999 1698 aa21.91■■□□□ 1.1
COL18A1-206ENST00000459895 SYNJ2O15056 1496 aa21.9■■□□□ 1.1
COL18A1-206ENST00000459895 KIF27Q86VH2 1401 aa21.9■■□□□ 1.1
COL18A1-206ENST00000459895 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
COL18A1-206ENST00000459895 RUSC2Q8N2Y8 1516 aa21.83■■□□□ 1.09
COL18A1-206ENST00000459895 GRIN2AQ12879 1464 aa21.81■■□□□ 1.08
COL18A1-206ENST00000459895 FHAD1B1AJZ9 1412 aa21.8■■□□□ 1.08
COL18A1-206ENST00000459895 CLASP1Q7Z460 1538 aa21.79■■□□□ 1.08
COL18A1-206ENST00000459895 CEP170Q5SW79 1584 aa21.78■■□□□ 1.08
COL18A1-206ENST00000459895 CHIC1Q5VXU3 224 aa21.76■■□□□ 1.07
COL18A1-206ENST00000459895 IGF1RP08069 1367 aa21.73■■□□□ 1.07
COL18A1-206ENST00000459895 FBLN2P98095 1184 aa21.71■■□□□ 1.07
COL18A1-206ENST00000459895 NUP160Q12769 1436 aa21.69■■□□□ 1.06
COL18A1-206ENST00000459895 CHMP7Q8WUX9 453 aaPredicted RBP21.68■■□□□ 1.06
COL18A1-206ENST00000459895 OSCARQ8IYS5 282 aa21.65■■□□□ 1.06
COL18A1-206ENST00000459895 DNAJC5Q9H3Z4 198 aa21.64■■□□□ 1.05
COL18A1-206ENST00000459895 EEA1Q15075 1411 aa21.63■■□□□ 1.05
COL18A1-206ENST00000459895 SHROOM2Q13796 1616 aa21.62■■□□□ 1.05
COL18A1-206ENST00000459895 CARMIL1Q5VZK9 1371 aa21.61■■□□□ 1.05
COL18A1-206ENST00000459895 RIMBP3CA6NJZ7 1639 aa21.61■■□□□ 1.05
COL18A1-206ENST00000459895 RIMBP3BA6NNM3 1639 aa21.61■■□□□ 1.05
COL18A1-206ENST00000459895 RIMBP3Q9UFD9 1639 aa21.61■■□□□ 1.05
COL18A1-206ENST00000459895 CTTNBP2Q8WZ74 1663 aa21.6■■□□□ 1.05
COL18A1-206ENST00000459895 PRXQ9BXM0 1461 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms