RNA–Protein interactions for RNA: ENST00000593048.5

CIRBP-241, Transcript of cold inducible RNA binding protein, human

TSL 3

Gene CIRBP, Length 650 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-241	ENST00000593048	NISCH	Q9Y2I1	1504 aa		39.88	■■■■□ 3.97
CIRBP-241	ENST00000593048	ABCC9	O60706	1549 aa		35.73	■■■■□ 3.31
CIRBP-241	ENST00000593048	CCDC180	Q9P1Z9	1646 aa		35.64	■■■■□ 3.3
CIRBP-241	ENST00000593048	RB1CC1	Q8TDY2	1594 aa		33.93	■■■■□ 3.02
CIRBP-241	ENST00000593048	DCAF8L2	P0C7V8	631 aa		33.8	■■■■□ 3
CIRBP-241	ENST00000593048	DNAJC5B	Q9UF47	199 aa		33.77	■■■■□ 3
CIRBP-241	ENST00000593048	NACAD	O15069	1562 aa		33.71	■■■□□ 2.99
CIRBP-241	ENST00000593048	MYO15B	Q96JP2	1530 aa		33.28	■■■□□ 2.92
CIRBP-241	ENST00000593048	UNC13A	Q9UPW8	1703 aa		33.25	■■■□□ 2.91
CIRBP-241	ENST00000593048	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.21	■■■□□ 2.91
CIRBP-241	ENST00000593048	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.07	■■■□□ 2.88
CIRBP-241	ENST00000593048	BICRA	Q9NZM4	1560 aa		33.02	■■■□□ 2.88
CIRBP-241	ENST00000593048	DCAF1	Q9Y4B6	1507 aa		32.92	■■■□□ 2.86
CIRBP-241	ENST00000593048	SCRIB	Q14160	1630 aa		32.56	■■■□□ 2.8
CIRBP-241	ENST00000593048	SHROOM4	Q9ULL8	1493 aa		32.54	■■■□□ 2.8
CIRBP-241	ENST00000593048	CC2D2A	Q9P2K1	1620 aa		32.31	■■■□□ 2.76
CIRBP-241	ENST00000593048	CECR2	Q9BXF3	1484 aa		32.23	■■■□□ 2.75
CIRBP-241	ENST00000593048	EIF4G1	Q04637	1599 aa	Known RBP	32.19	■■■□□ 2.74
CIRBP-241	ENST00000593048	DNAJC5	Q9H3Z4	198 aa		31.18	■■■□□ 2.58
CIRBP-241	ENST00000593048	NCAPD3	P42695	1498 aa		31.13	■■■□□ 2.57
CIRBP-241	ENST00000593048	ATAD2B	Q9ULI0	1458 aa		31.07	■■■□□ 2.56
CIRBP-241	ENST00000593048	SMARCA4	P51532	1647 aa		31.05	■■■□□ 2.56
CIRBP-241	ENST00000593048	SMARCA2	P51531	1590 aa		31	■■■□□ 2.55
CIRBP-241	ENST00000593048	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.96	■■■□□ 2.55
CIRBP-241	ENST00000593048	CUX2	O14529	1486 aa		30.94	■■■□□ 2.54
CIRBP-241	ENST00000593048	HMGXB3	Q12766	1538 aa		30.88	■■■□□ 2.53
CIRBP-241	ENST00000593048	ERCC6	Q03468	1493 aa		30.83	■■■□□ 2.53
CIRBP-241	ENST00000593048	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.81	■■■□□ 2.52
CIRBP-241	ENST00000593048	MROH2B	Q7Z745	1585 aa		30.73	■■■□□ 2.51
CIRBP-241	ENST00000593048	PEG3	Q9GZU2	1588 aa		30.71	■■■□□ 2.51
CIRBP-241	ENST00000593048	NES	P48681	1621 aa		30.65	■■■□□ 2.5
CIRBP-241	ENST00000593048	THOC2	Q8NI27	1593 aa	Known RBP	30.45	■■■□□ 2.46
CIRBP-241	ENST00000593048	LAMC3	Q9Y6N6	1575 aa		30.41	■■■□□ 2.46
CIRBP-241	ENST00000593048	WIZ	O95785	1651 aa		30.36	■■■□□ 2.45
CIRBP-241	ENST00000593048	KIF21A	Q7Z4S6	1674 aa		30.28	■■■□□ 2.44
CIRBP-241	ENST00000593048	PDS5B	Q9NTI5	1447 aa		30.28	■■■□□ 2.44
CIRBP-241	ENST00000593048	CADPS	Q9ULU8	1353 aa		30.24	■■■□□ 2.43
CIRBP-241	ENST00000593048	RSF1	Q96T23	1441 aa	Predicted RBP	30.2	■■■□□ 2.42
CIRBP-241	ENST00000593048	TOP2A	P11388	1531 aa	Known RBP	30	■■■□□ 2.39
CIRBP-241	ENST00000593048	MRC2	Q9UBG0	1479 aa		29.98	■■■□□ 2.39
CIRBP-241	ENST00000593048	WDR62	O43379	1518 aa		29.96	■■■□□ 2.39
CIRBP-241	ENST00000593048	CFTR	P13569	1480 aa		29.89	■■■□□ 2.38
CIRBP-241	ENST00000593048	CEP164	Q9UPV0	1460 aa		29.89	■■■□□ 2.38
CIRBP-241	ENST00000593048	FANCD2	Q9BXW9	1451 aa		29.87	■■■□□ 2.37
CIRBP-241	ENST00000593048	CCDC88B	A6NC98	1476 aa		29.7	■■■□□ 2.35
CIRBP-241	ENST00000593048	TRIM41	Q8WV44	630 aa		29.61	■■■□□ 2.33
CIRBP-241	ENST00000593048	URB2	Q14146	1524 aa	Known RBP	29.58	■■■□□ 2.33
CIRBP-241	ENST00000593048	PRDM2	Q13029	1718 aa		29.5	■■■□□ 2.31
CIRBP-241	ENST00000593048	OSCAR	Q8IYS5	282 aa		29.4	■■■□□ 2.3
CIRBP-241	ENST00000593048	TOPBP1	Q92547	1522 aa		29.31	■■■□□ 2.28
CIRBP-241	ENST00000593048	ABCC8	Q09428	1581 aa		29.3	■■■□□ 2.28
CIRBP-241	ENST00000593048	IFT140	Q96RY7	1462 aa		29.29	■■■□□ 2.28
CIRBP-241	ENST00000593048	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.2	■■■□□ 2.27
CIRBP-241	ENST00000593048	DNMBP	Q6XZF7	1577 aa		29.2	■■■□□ 2.26
CIRBP-241	ENST00000593048	SUPT5H	O00267	1087 aa	Known RBP	29.16	■■■□□ 2.26
CIRBP-241	ENST00000593048	RIMBP3C	A6NJZ7	1639 aa		29.14	■■■□□ 2.26
CIRBP-241	ENST00000593048	RIMBP3B	A6NNM3	1639 aa		29.14	■■■□□ 2.26
CIRBP-241	ENST00000593048	RIMBP3	Q9UFD9	1639 aa		29.14	■■■□□ 2.26
CIRBP-241	ENST00000593048	EIF4G3	O43432	1585 aa	Known RBP	29.05	■■■□□ 2.24
CIRBP-241	ENST00000593048	POLA1	P09884	1462 aa	Predicted RBP	29.02	■■■□□ 2.24
CIRBP-241	ENST00000593048	ARHGEF11	O15085	1522 aa		29.01	■■■□□ 2.23
CIRBP-241	ENST00000593048	AQR	O60306	1485 aa	Known RBP eCLIP	29	■■■□□ 2.23	3e-10	■■■■■ 35.8
CIRBP-241	ENST00000593048	TARBP1	Q13395	1621 aa	Known RBP	28.98	■■■□□ 2.23
CIRBP-241	ENST00000593048	SOGA1	O94964	1423 aa		28.96	■■■□□ 2.23
CIRBP-241	ENST00000593048	RAD54L2	Q9Y4B4	1467 aa		28.95	■■■□□ 2.22
CIRBP-241	ENST00000593048	CHD1	O14646	1710 aa		28.9	■■■□□ 2.22
CIRBP-241	ENST00000593048	FBLN2	P98095	1184 aa		28.89	■■■□□ 2.22
CIRBP-241	ENST00000593048	FGD5	Q6ZNL6	1462 aa		28.88	■■■□□ 2.21
CIRBP-241	ENST00000593048	TDRD9	Q8NDG6	1382 aa	Known RBP	28.88	■■■□□ 2.21
CIRBP-241	ENST00000593048	CUX1	P39880	1505 aa		28.86	■■■□□ 2.21
CIRBP-241	ENST00000593048	WDR97	A6NE52	1622 aa		28.72	■■■□□ 2.19
CIRBP-241	ENST00000593048	ARAP1	Q96P48	1450 aa		28.72	■■■□□ 2.19
CIRBP-241	ENST00000593048	CYB5RL	Q6IPT4	315 aa		28.71	■■■□□ 2.19
CIRBP-241	ENST00000593048	SNAPC4	Q5SXM2	1469 aa		28.69	■■■□□ 2.18
CIRBP-241	ENST00000593048	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.68	■■■□□ 2.18
CIRBP-241	ENST00000593048	GRIN2B	Q13224	1484 aa		28.66	■■■□□ 2.18
CIRBP-241	ENST00000593048	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.61	■■■□□ 2.17
CIRBP-241	ENST00000593048	GAPVD1	Q14C86	1478 aa		28.59	■■■□□ 2.17
CIRBP-241	ENST00000593048	CLASP1	Q7Z460	1538 aa		28.58	■■■□□ 2.17
CIRBP-241	ENST00000593048	ABCA10	Q8WWZ4	1543 aa		28.55	■■■□□ 2.16
CIRBP-241	ENST00000593048	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.53	■■■□□ 2.16	1e-6	■■■■■ 58.5
CIRBP-241	ENST00000593048	SYNJ2	O15056	1496 aa		28.53	■■■□□ 2.16
CIRBP-241	ENST00000593048	SYNJ1	O43426	1573 aa		28.49	■■■□□ 2.15
CIRBP-241	ENST00000593048	PBRM1	Q86U86	1689 aa		28.47	■■■□□ 2.15
CIRBP-241	ENST00000593048	TOP2B	Q02880	1626 aa		28.44	■■■□□ 2.14
CIRBP-241	ENST00000593048	ABCA5	Q8WWZ7	1642 aa		28.44	■■■□□ 2.14
CIRBP-241	ENST00000593048	TRH	P20396	242 aa	Predicted RBP	28.43	■■■□□ 2.14
CIRBP-241	ENST00000593048	BIVM-ERCC5	R4GMW8	1640 aa		28.42	■■■□□ 2.14
CIRBP-241	ENST00000593048	GRIN2A	Q12879	1464 aa		28.27	■■■□□ 2.12
CIRBP-241	ENST00000593048	FHAD1	B1AJZ9	1412 aa		28.23	■■■□□ 2.11
CIRBP-241	ENST00000593048	ADAMTS12	P58397	1594 aa		28.23	■■■□□ 2.11
CIRBP-241	ENST00000593048	ERICH3	Q5RHP9	1530 aa		28.2	■■■□□ 2.1
CIRBP-241	ENST00000593048	NUP160	Q12769	1436 aa		28.15	■■■□□ 2.1
CIRBP-241	ENST00000593048	CEP170	Q5SW79	1584 aa		28.11	■■■□□ 2.09
CIRBP-241	ENST00000593048	ERCC6L2	Q5T890	1561 aa		28.09	■■■□□ 2.09
CIRBP-241	ENST00000593048	SHROOM2	Q13796	1616 aa		28.01	■■■□□ 2.07
CIRBP-241	ENST00000593048	KIF27	Q86VH2	1401 aa		27.99	■■■□□ 2.07
CIRBP-241	ENST00000593048	JPH4	Q96JJ6	628 aa		27.96	■■■□□ 2.07
CIRBP-241	ENST00000593048	IGF1R	P08069	1367 aa		27.93	■■■□□ 2.06
CIRBP-241	ENST00000593048	PRG4	Q92954	1404 aa	Predicted RBP	27.92	■■■□□ 2.06

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