RNA–Protein interactions for RNA: ENST00000409909.7

LSM5-204, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM5, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-204ENST00000409909 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
LSM5-204ENST00000409909 CCDC180Q9P1Z9 1646 aa38.93■■■■□ 3.82
LSM5-204ENST00000409909 ABCC9O60706 1549 aa38.52■■■■□ 3.76
LSM5-204ENST00000409909 RB1CC1Q8TDY2 1594 aa36.83■■■■□ 3.49
LSM5-204ENST00000409909 NACADO15069 1562 aa36.71■■■■□ 3.47
LSM5-204ENST00000409909 DCAF8L2P0C7V8 631 aa36.68■■■■□ 3.46
LSM5-204ENST00000409909 MYO15BQ96JP2 1530 aa36.37■■■■□ 3.41
LSM5-204ENST00000409909 ZCCHC6Q5VYS8 1495 aaKnown RBP36.3■■■■□ 3.4
LSM5-204ENST00000409909 DCAF1Q9Y4B6 1507 aa36.09■■■■□ 3.37
LSM5-204ENST00000409909 UNC13AQ9UPW8 1703 aa36.04■■■■□ 3.36
LSM5-204ENST00000409909 PABPN1Q86U42 306 aaKnown RBP eCLIP35.98■■■■□ 3.35
LSM5-204ENST00000409909 BICRAQ9NZM4 1560 aa35.81■■■■□ 3.32
LSM5-204ENST00000409909 DNAJC5BQ9UF47 199 aa35.78■■■■□ 3.32
LSM5-204ENST00000409909 SCRIBQ14160 1630 aa35.54■■■■□ 3.28
LSM5-204ENST00000409909 SHROOM4Q9ULL8 1493 aa35.29■■■■□ 3.24
LSM5-204ENST00000409909 EIF4G1Q04637 1599 aaKnown RBP34.85■■■■□ 3.17
LSM5-204ENST00000409909 CC2D2AQ9P2K1 1620 aa34.81■■■■□ 3.16
LSM5-204ENST00000409909 CECR2Q9BXF3 1484 aa34.64■■■■□ 3.14
LSM5-204ENST00000409909 SMARCA4P51532 1647 aa33.95■■■■□ 3.03
LSM5-204ENST00000409909 NCAPD3P42695 1498 aa33.92■■■■□ 3.02
LSM5-204ENST00000409909 ATAD2BQ9ULI0 1458 aa33.88■■■■□ 3.01
LSM5-204ENST00000409909 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
LSM5-204ENST00000409909 SMARCA2P51531 1590 aa33.78■■■■□ 3
LSM5-204ENST00000409909 MROH2BQ7Z745 1585 aa33.68■■■□□ 2.98
LSM5-204ENST00000409909 HMGXB3Q12766 1538 aa33.68■■■□□ 2.98
LSM5-204ENST00000409909 PEG3Q9GZU2 1588 aa33.62■■■□□ 2.97
LSM5-204ENST00000409909 BAZ1BQ9UIG0 1483 aaKnown RBP33.56■■■□□ 2.96
LSM5-204ENST00000409909 WIZO95785 1651 aa33.29■■■□□ 2.92
LSM5-204ENST00000409909 NESP48681 1621 aa33.25■■■□□ 2.91
LSM5-204ENST00000409909 RSF1Q96T23 1441 aaPredicted RBP33.18■■■□□ 2.9
LSM5-204ENST00000409909 ERCC6Q03468 1493 aa33.18■■■□□ 2.9
LSM5-204ENST00000409909 LAMC3Q9Y6N6 1575 aa33.04■■■□□ 2.88
LSM5-204ENST00000409909 CUX2O14529 1486 aa32.95■■■□□ 2.87
LSM5-204ENST00000409909 CADPSQ9ULU8 1353 aa32.91■■■□□ 2.86
LSM5-204ENST00000409909 TOP2AP11388 1531 aaKnown RBP32.88■■■□□ 2.85
LSM5-204ENST00000409909 PDS5BQ9NTI5 1447 aa32.84■■■□□ 2.85
LSM5-204ENST00000409909 KIF21AQ7Z4S6 1674 aa32.8■■■□□ 2.84
LSM5-204ENST00000409909 THOC2Q8NI27 1593 aaKnown RBP32.77■■■□□ 2.84
LSM5-204ENST00000409909 CFTRP13569 1480 aa32.64■■■□□ 2.82
LSM5-204ENST00000409909 CCDC88BA6NC98 1476 aa32.54■■■□□ 2.8
LSM5-204ENST00000409909 FANCD2Q9BXW9 1451 aa32.53■■■□□ 2.8
LSM5-204ENST00000409909 MRC2Q9UBG0 1479 aa32.53■■■□□ 2.8
LSM5-204ENST00000409909 CEP164Q9UPV0 1460 aa32.49■■■□□ 2.79
LSM5-204ENST00000409909 DNAJC5Q9H3Z4 198 aa32.44■■■□□ 2.78
LSM5-204ENST00000409909 WDR62O43379 1518 aa32.44■■■□□ 2.78
LSM5-204ENST00000409909 PRDM2Q13029 1718 aa32.3■■■□□ 2.76
LSM5-204ENST00000409909 URB2Q14146 1524 aaKnown RBP32.25■■■□□ 2.75
LSM5-204ENST00000409909 SUPT5HO00267 1087 aaKnown RBP32.08■■■□□ 2.73
LSM5-204ENST00000409909 TOPBP1Q92547 1522 aa31.97■■■□□ 2.71
LSM5-204ENST00000409909 ABCC8Q09428 1581 aa31.9■■■□□ 2.7
LSM5-204ENST00000409909 DNMBPQ6XZF7 1577 aa31.87■■■□□ 2.69
LSM5-204ENST00000409909 IFT140Q96RY7 1462 aa31.83■■■□□ 2.69
LSM5-204ENST00000409909 ZNF608Q9ULD9 1512 aaPredicted RBP31.78■■■□□ 2.68
LSM5-204ENST00000409909 POLA1P09884 1462 aaPredicted RBP31.67■■■□□ 2.66
LSM5-204ENST00000409909 TARBP1Q13395 1621 aaKnown RBP31.66■■■□□ 2.66
LSM5-204ENST00000409909 CUX1P39880 1505 aa31.61■■■□□ 2.65
LSM5-204ENST00000409909 EIF4G3O43432 1585 aaKnown RBP31.58■■■□□ 2.65
LSM5-204ENST00000409909 RAD54L2Q9Y4B4 1467 aa31.58■■■□□ 2.65
LSM5-204ENST00000409909 OSCARQ8IYS5 282 aa31.57■■■□□ 2.64
LSM5-204ENST00000409909 AQRO60306 1485 aaKnown RBP eCLIP31.56■■■□□ 2.648e-7■■■□□ 16.1
LSM5-204ENST00000409909 SOGA1O94964 1423 aa31.55■■■□□ 2.64
LSM5-204ENST00000409909 FGD5Q6ZNL6 1462 aa31.54■■■□□ 2.64
LSM5-204ENST00000409909 TDRD9Q8NDG6 1382 aaKnown RBP31.44■■■□□ 2.62
LSM5-204ENST00000409909 WDR97A6NE52 1622 aa31.31■■■□□ 2.6
LSM5-204ENST00000409909 CHD1O14646 1710 aa31.26■■■□□ 2.59
LSM5-204ENST00000409909 WRNQ14191 1432 aaPredicted RBP eCLIP31.24■■■□□ 2.59
LSM5-204ENST00000409909 FBLN2P98095 1184 aa31.23■■■□□ 2.59
LSM5-204ENST00000409909 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
LSM5-204ENST00000409909 SNAPC4Q5SXM2 1469 aa31.21■■■□□ 2.59
LSM5-204ENST00000409909 TOP2BQ02880 1626 aa31.21■■■□□ 2.59
LSM5-204ENST00000409909 ABCA10Q8WWZ4 1543 aa31.21■■■□□ 2.59
LSM5-204ENST00000409909 TRIM41Q8WV44 630 aa31.21■■■□□ 2.59
LSM5-204ENST00000409909 BIVM-ERCC5R4GMW8 1640 aa31.2■■■□□ 2.59
LSM5-204ENST00000409909 GRIN2BQ13224 1484 aa31.2■■■□□ 2.58
LSM5-204ENST00000409909 GAPVD1Q14C86 1478 aa31.16■■■□□ 2.58
LSM5-204ENST00000409909 MAGI1Q96QZ7 1491 aaPredicted RBP31.14■■■□□ 2.57
LSM5-204ENST00000409909 ABCA5Q8WWZ7 1642 aa31.12■■■□□ 2.57
LSM5-204ENST00000409909 PBRM1Q86U86 1689 aa31.09■■■□□ 2.57
LSM5-204ENST00000409909 RIMBP3CA6NJZ7 1639 aa31.09■■■□□ 2.57
LSM5-204ENST00000409909 RIMBP3BA6NNM3 1639 aa31.09■■■□□ 2.57
LSM5-204ENST00000409909 RIMBP3Q9UFD9 1639 aa31.09■■■□□ 2.57
LSM5-204ENST00000409909 CHMP7Q8WUX9 453 aaPredicted RBP31.07■■■□□ 2.56
LSM5-204ENST00000409909 ARHGEF11O15085 1522 aa31.05■■■□□ 2.56
LSM5-204ENST00000409909 SYNJ2O15056 1496 aa31.03■■■□□ 2.56
LSM5-204ENST00000409909 CLASP1Q7Z460 1538 aa30.93■■■□□ 2.54
LSM5-204ENST00000409909 ADAMTS12P58397 1594 aa30.83■■■□□ 2.53
LSM5-204ENST00000409909 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.52
LSM5-204ENST00000409909 ERICH3Q5RHP9 1530 aa30.82■■■□□ 2.52
LSM5-204ENST00000409909 GRIN2AQ12879 1464 aa30.8■■■□□ 2.52
LSM5-204ENST00000409909 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
LSM5-204ENST00000409909 FHAD1B1AJZ9 1412 aa30.78■■■□□ 2.52
LSM5-204ENST00000409909 NUP160Q12769 1436 aa30.69■■■□□ 2.5
LSM5-204ENST00000409909 CEP170Q5SW79 1584 aa30.68■■■□□ 2.5
LSM5-204ENST00000409909 KIF27Q86VH2 1401 aa30.61■■■□□ 2.49
LSM5-204ENST00000409909 IGF1RP08069 1367 aa30.6■■■□□ 2.49
LSM5-204ENST00000409909 ERCC6L2Q5T890 1561 aa30.52■■■□□ 2.48
LSM5-204ENST00000409909 SHROOM2Q13796 1616 aa30.49■■■□□ 2.47
LSM5-204ENST00000409909 CUL7Q14999 1698 aa30.44■■■□□ 2.46
LSM5-204ENST00000409909 JPH4Q96JJ6 628 aa30.4■■■□□ 2.46
LSM5-204ENST00000409909 RUSC2Q8N2Y8 1516 aa30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms