RNA–Protein interactions for RNA: ENST00000554417.1

HNRNPC-210, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 2

Gene HNRNPC, Length 691 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-210ENST00000554417 AEBP2Q6ZN18 517 aaPredicted RBP23.74■■□□□ 1.39
HNRNPC-210ENST00000554417 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
HNRNPC-210ENST00000554417 SENP3Q9H4L4 574 aaPredicted RBP20.33■□□□□ 0.85
HNRNPC-210ENST00000554417 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
HNRNPC-210ENST00000554417 FOXD1Q16676 465 aa19.01■□□□□ 0.63
HNRNPC-210ENST00000554417 POTEDQ86YR6 584 aa18.52■□□□□ 0.56
HNRNPC-210ENST00000554417 MSH5O43196 834 aa18.01■□□□□ 0.47
HNRNPC-210ENST00000554417 PIAS4Q8N2W9 510 aaPredicted RBP17.6■□□□□ 0.41
HNRNPC-210ENST00000554417 PPP6R1Q9UPN7 881 aa17.34■□□□□ 0.37
HNRNPC-210ENST00000554417 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
HNRNPC-210ENST00000554417 ADRA2BP18089 450 aa17.23■□□□□ 0.35
HNRNPC-210ENST00000554417 NISCHQ9Y2I1 1504 aa17.18■□□□□ 0.34
HNRNPC-210ENST00000554417 DMRT2Q9Y5R5 561 aa16.05■□□□□ 0.16
HNRNPC-210ENST00000554417 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
HNRNPC-210ENST00000554417 SCAF1Q9H7N4 1312 aaKnown RBP15.77■□□□□ 0.12
HNRNPC-210ENST00000554417 CACNB1Q02641 598 aaPredicted RBP15.74■□□□□ 0.11
HNRNPC-210ENST00000554417 RNF39Q9H2S5 420 aa15.34■□□□□ 0.05
HNRNPC-210ENST00000554417 DCAF8L1A6NGE4 600 aa15.3■□□□□ 0.04
HNRNPC-210ENST00000554417 HOXD11P31277 338 aaPredicted RBP15.26■□□□□ 0.03
HNRNPC-210ENST00000554417 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.02
HNRNPC-210ENST00000554417 PPP4R3CPQ6ZMV5 832 aa15.09■□□□□ 0.01
HNRNPC-210ENST00000554417 C1QBPQ07021 282 aaKnown RBP15.07■□□□□ 0
HNRNPC-210ENST00000554417 RNF216Q9NWF9 866 aaPredicted RBP14.98□□□□□ -0.01
HNRNPC-210ENST00000554417 CNKSR2Q8WXI2 1034 aa14.95□□□□□ -0.02
HNRNPC-210ENST00000554417 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
HNRNPC-210ENST00000554417 ABCC9O60706 1549 aa14.63□□□□□ -0.07
HNRNPC-210ENST00000554417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.45□□□□□ -0.18e-9■■□□□ 11.6
HNRNPC-210ENST00000554417 POTEHQ6S545 545 aa14.39□□□□□ -0.11
HNRNPC-210ENST00000554417 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
HNRNPC-210ENST00000554417 MYO15BQ96JP2 1530 aa14.34□□□□□ -0.11
HNRNPC-210ENST00000554417 ZCCHC6Q5VYS8 1495 aaKnown RBP14.33□□□□□ -0.12
HNRNPC-210ENST00000554417 DCAF1Q9Y4B6 1507 aa14.31□□□□□ -0.12
HNRNPC-210ENST00000554417 NACADO15069 1562 aa14.31□□□□□ -0.12
HNRNPC-210ENST00000554417 DCAF8L2P0C7V8 631 aa14.29□□□□□ -0.12
HNRNPC-210ENST00000554417 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
HNRNPC-210ENST00000554417 DSG3P32926 999 aa14.16□□□□□ -0.14
HNRNPC-210ENST00000554417 U3KPZ7 1027 aaPredicted RBP14.15□□□□□ -0.14
HNRNPC-210ENST00000554417 NPM3O75607 178 aaKnown RBP14.14□□□□□ -0.15
HNRNPC-210ENST00000554417 SPINK5Q9NQ38 1064 aaPredicted RBP14.08□□□□□ -0.16
HNRNPC-210ENST00000554417 CAPN15O75808 1086 aa14.04□□□□□ -0.16
HNRNPC-210ENST00000554417 SHROOM4Q9ULL8 1493 aa13.8□□□□□ -0.2
HNRNPC-210ENST00000554417 SCRIBQ14160 1630 aa13.78□□□□□ -0.2
HNRNPC-210ENST00000554417 UNC13AQ9UPW8 1703 aa13.73□□□□□ -0.21
HNRNPC-210ENST00000554417 PABPN1Q86U42 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
HNRNPC-210ENST00000554417 BICRAQ9NZM4 1560 aa13.68□□□□□ -0.22
HNRNPC-210ENST00000554417 TRHP20396 242 aaPredicted RBP13.68□□□□□ -0.22
HNRNPC-210ENST00000554417 ZNF219Q9P2Y4 722 aaPredicted RBP13.68□□□□□ -0.22
HNRNPC-210ENST00000554417 ABCB7O75027 752 aa13.67□□□□□ -0.22
HNRNPC-210ENST00000554417 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
HNRNPC-210ENST00000554417 APLP2Q06481 763 aa13.67□□□□□ -0.22
HNRNPC-210ENST00000554417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
HNRNPC-210ENST00000554417 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
HNRNPC-210ENST00000554417 RBM42Q9BTD8 480 aaKnown RBP13.52□□□□□ -0.25
HNRNPC-210ENST00000554417 CHRDL2Q6WN34 429 aa13.43□□□□□ -0.26
HNRNPC-210ENST00000554417 SAMD1Q6SPF0 538 aaPredicted RBP13.42□□□□□ -0.26
HNRNPC-210ENST00000554417 EIF4G1Q04637 1599 aaKnown RBP13.37□□□□□ -0.27
HNRNPC-210ENST00000554417 KCNA4P22459 653 aa13.36□□□□□ -0.27
HNRNPC-210ENST00000554417 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
HNRNPC-210ENST00000554417 CECR2Q9BXF3 1484 aa13.27□□□□□ -0.29
HNRNPC-210ENST00000554417 SMARCA4P51532 1647 aa13.25□□□□□ -0.29
HNRNPC-210ENST00000554417 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
HNRNPC-210ENST00000554417 SP7Q8TDD2 431 aaPredicted RBP13.23□□□□□ -0.29
HNRNPC-210ENST00000554417 SMARCA2P51531 1590 aa13.23□□□□□ -0.29
HNRNPC-210ENST00000554417 POLA2Q14181 598 aa13.21□□□□□ -0.29
HNRNPC-210ENST00000554417 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
HNRNPC-210ENST00000554417 ATAD2BQ9ULI0 1458 aa13.18□□□□□ -0.3
HNRNPC-210ENST00000554417 PEG3Q9GZU2 1588 aa13.18□□□□□ -0.3
HNRNPC-210ENST00000554417 MROH2BQ7Z745 1585 aa13.17□□□□□ -0.3
HNRNPC-210ENST00000554417 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
HNRNPC-210ENST00000554417 HMGXB3Q12766 1538 aa13.13□□□□□ -0.31
HNRNPC-210ENST00000554417 MYCNP04198 464 aaPredicted RBP13.1□□□□□ -0.31
HNRNPC-210ENST00000554417 BAZ1BQ9UIG0 1483 aaKnown RBP13.1□□□□□ -0.31
HNRNPC-210ENST00000554417 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
HNRNPC-210ENST00000554417 WIZO95785 1651 aa13□□□□□ -0.33
HNRNPC-210ENST00000554417 PIP4P2Q8N4L2 257 aa13□□□□□ -0.33
HNRNPC-210ENST00000554417 TOP2AP11388 1531 aaKnown RBP12.98□□□□□ -0.33
HNRNPC-210ENST00000554417 REM2Q8IYK8 340 aaPredicted RBP12.96□□□□□ -0.33
HNRNPC-210ENST00000554417 SUPT5HO00267 1087 aaKnown RBP12.94□□□□□ -0.34
HNRNPC-210ENST00000554417 ZBTB12Q9Y330 459 aaPredicted RBP12.94□□□□□ -0.34
HNRNPC-210ENST00000554417 HAX1O00165 279 aa12.86□□□□□ -0.35
HNRNPC-210ENST00000554417 FXR2P51116 673 aaKnown RBP eCLIP12.85□□□□□ -0.35
HNRNPC-210ENST00000554417 PITPNM1O00562 1244 aa12.83□□□□□ -0.36
HNRNPC-210ENST00000554417 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
HNRNPC-210ENST00000554417 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
HNRNPC-210ENST00000554417 ATF5Q9Y2D1 282 aaPredicted RBP12.82□□□□□ -0.36
HNRNPC-210ENST00000554417 LAMC3Q9Y6N6 1575 aa12.81□□□□□ -0.36
HNRNPC-210ENST00000554417 CCDC88BA6NC98 1476 aa12.8□□□□□ -0.36
HNRNPC-210ENST00000554417 PDS5BQ9NTI5 1447 aa12.78□□□□□ -0.36
HNRNPC-210ENST00000554417 CFTRP13569 1480 aa12.76□□□□□ -0.37
HNRNPC-210ENST00000554417 EVX2Q03828 476 aa12.71□□□□□ -0.37
HNRNPC-210ENST00000554417 ERCC6Q03468 1493 aa12.69□□□□□ -0.38
HNRNPC-210ENST00000554417 NESP48681 1621 aa12.66□□□□□ -0.38
HNRNPC-210ENST00000554417 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
HNRNPC-210ENST00000554417 FANCD2Q9BXW9 1451 aa12.63□□□□□ -0.39
HNRNPC-210ENST00000554417 CEP164Q9UPV0 1460 aa12.62□□□□□ -0.39
HNRNPC-210ENST00000554417 ABCC8Q09428 1581 aa12.6□□□□□ -0.39
HNRNPC-210ENST00000554417 PRDM2Q13029 1718 aa12.59□□□□□ -0.39
HNRNPC-210ENST00000554417 MRC2Q9UBG0 1479 aa12.55□□□□□ -0.4
HNRNPC-210ENST00000554417 CUX2O14529 1486 aa12.53□□□□□ -0.4
HNRNPC-210ENST00000554417 KIF21AQ7Z4S6 1674 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms