RNA–Protein interactions for RNA: ENST00000409987.5

LSM5-206, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 5 BASIC

Gene LSM5, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-206ENST00000409987 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
LSM5-206ENST00000409987 CHIC1Q5VXU3 224 aa22.54■■□□□ 1.2
LSM5-206ENST00000409987 PHF23Q9BUL5 403 aaPredicted RBP19.92■□□□□ 0.78
LSM5-206ENST00000409987 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
LSM5-206ENST00000409987 PLPPR3Q6T4P5 718 aa18.48■□□□□ 0.55
LSM5-206ENST00000409987 FOXD1Q16676 465 aa17.71■□□□□ 0.43
LSM5-206ENST00000409987 ADRA2BP18089 450 aa17.42■□□□□ 0.38
LSM5-206ENST00000409987 PPP6R1Q9UPN7 881 aa17.42■□□□□ 0.38
LSM5-206ENST00000409987 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
LSM5-206ENST00000409987 PIAS4Q8N2W9 510 aaPredicted RBP16.78■□□□□ 0.28
LSM5-206ENST00000409987 KCNA4P22459 653 aa16.53■□□□□ 0.24
LSM5-206ENST00000409987 MSH5O43196 834 aa16.46■□□□□ 0.23
LSM5-206ENST00000409987 PPP4R3CPQ6ZMV5 832 aa16.36■□□□□ 0.21
LSM5-206ENST00000409987 NCBP3Q53F19 620 aaKnown RBP16.02■□□□□ 0.16
LSM5-206ENST00000409987 EHMT2Q96KQ7 1210 aa15.89■□□□□ 0.13
LSM5-206ENST00000409987 NPM3O75607 178 aaKnown RBP15.85■□□□□ 0.13
LSM5-206ENST00000409987 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
LSM5-206ENST00000409987 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
LSM5-206ENST00000409987 CNKSR2Q8WXI2 1034 aa15.78■□□□□ 0.12
LSM5-206ENST00000409987 MAPK8IP2Q13387 824 aaPredicted RBP15.68■□□□□ 0.1
LSM5-206ENST00000409987 CSRNP3Q8WYN3 585 aa15.51■□□□□ 0.07
LSM5-206ENST00000409987 RNF216Q9NWF9 866 aaPredicted RBP15.36■□□□□ 0.05
LSM5-206ENST00000409987 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
LSM5-206ENST00000409987 DNAJC5BQ9UF47 199 aa15.3■□□□□ 0.04
LSM5-206ENST00000409987 ZBTB22O15209 634 aa15.25■□□□□ 0.03
LSM5-206ENST00000409987 HOXD11P31277 338 aaPredicted RBP15.19■□□□□ 0.02
LSM5-206ENST00000409987 FOXD4L1Q9NU39 408 aa15.05■□□□□ -0
LSM5-206ENST00000409987 SLC4A2P04920 1241 aa14.87□□□□□ -0.03
LSM5-206ENST00000409987 DCAF8L1A6NGE4 600 aa14.62□□□□□ -0.07
LSM5-206ENST00000409987 MYCNP04198 464 aaPredicted RBP14.6□□□□□ -0.07
LSM5-206ENST00000409987 CACNB1Q02641 598 aaPredicted RBP14.6□□□□□ -0.07
LSM5-206ENST00000409987 ATXN8OSP0DMR3 200 aa14.46□□□□□ -0.09
LSM5-206ENST00000409987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.46□□□□□ -0.093e-13■■■□□ 16
LSM5-206ENST00000409987 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
LSM5-206ENST00000409987 ATF5Q9Y2D1 282 aaPredicted RBP14.23□□□□□ -0.13
LSM5-206ENST00000409987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.21□□□□□ -0.13
LSM5-206ENST00000409987 HNRNPUL2Q1KMD3 747 aaKnown RBP14.21□□□□□ -0.13
LSM5-206ENST00000409987 SAMD1Q6SPF0 538 aaPredicted RBP14.2□□□□□ -0.14
LSM5-206ENST00000409987 FKBP8Q14318 412 aa13.97□□□□□ -0.17
LSM5-206ENST00000409987 APLP2Q06481 763 aa13.94□□□□□ -0.18
LSM5-206ENST00000409987 RNF39Q9H2S5 420 aa13.93□□□□□ -0.18
LSM5-206ENST00000409987 ZNF219Q9P2Y4 722 aaPredicted RBP13.92□□□□□ -0.18
LSM5-206ENST00000409987 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
LSM5-206ENST00000409987 TRHP20396 242 aaPredicted RBP13.72□□□□□ -0.21
LSM5-206ENST00000409987 C1QBPQ07021 282 aaKnown RBP13.72□□□□□ -0.21
LSM5-206ENST00000409987 CAPN15O75808 1086 aa13.67□□□□□ -0.22
LSM5-206ENST00000409987 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
LSM5-206ENST00000409987 POLA2Q14181 598 aa13.61□□□□□ -0.23
LSM5-206ENST00000409987 RTN4Q9NQC3 1192 aaKnown RBP13.54□□□□□ -0.24
LSM5-206ENST00000409987 FBLN2P98095 1184 aa13.52□□□□□ -0.25
LSM5-206ENST00000409987 SPDYE4A6NLX3 237 aa13.51□□□□□ -0.25
LSM5-206ENST00000409987 AMER1Q5JTC6 1135 aaPredicted RBP13.51□□□□□ -0.25
LSM5-206ENST00000409987 ABCB7O75027 752 aa13.48□□□□□ -0.25
LSM5-206ENST00000409987 POTEHQ6S545 545 aa13.44□□□□□ -0.26
LSM5-206ENST00000409987 PROM2Q8N271 834 aa13.38□□□□□ -0.27
LSM5-206ENST00000409987 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
LSM5-206ENST00000409987 DSG3P32926 999 aa13.36□□□□□ -0.27
LSM5-206ENST00000409987 FBXO3Q9UK99 471 aa13.29□□□□□ -0.28
LSM5-206ENST00000409987 VASPP50552 380 aaPredicted RBP13.15□□□□□ -0.3
LSM5-206ENST00000409987 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
LSM5-206ENST00000409987 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
LSM5-206ENST00000409987 SPDYE2BA6NHP3 402 aa13.08□□□□□ -0.32
LSM5-206ENST00000409987 SPDYE6P0CI01 402 aa13.08□□□□□ -0.32
LSM5-206ENST00000409987 SPDYE2Q495Y8 402 aa13.08□□□□□ -0.32
LSM5-206ENST00000409987 SSUH2Q9Y2M2 353 aa13.06□□□□□ -0.32
LSM5-206ENST00000409987 IFNLR1Q8IU57 520 aaPredicted RBP13.02□□□□□ -0.33
LSM5-206ENST00000409987 PABPN1Q86U42 306 aaKnown RBP eCLIP12.96□□□□□ -0.33
LSM5-206ENST00000409987 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
LSM5-206ENST00000409987 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
LSM5-206ENST00000409987 KLHL34Q8N239 644 aa12.79□□□□□ -0.36
LSM5-206ENST00000409987 PKD2Q13563 968 aa12.78□□□□□ -0.36
LSM5-206ENST00000409987 PLCD3Q8N3E9 789 aa12.77□□□□□ -0.37
LSM5-206ENST00000409987 SPOCK2Q92563 424 aa12.76□□□□□ -0.37
LSM5-206ENST00000409987 MIER1Q8N108 512 aa12.74□□□□□ -0.37
LSM5-206ENST00000409987 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
LSM5-206ENST00000409987 AKT1S1Q96B36 256 aa12.63□□□□□ -0.39
LSM5-206ENST00000409987 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
LSM5-206ENST00000409987 PLEKHG5O94827 1062 aa12.58□□□□□ -0.4
LSM5-206ENST00000409987 ECM2O94769 699 aaPredicted RBP12.57□□□□□ -0.4
LSM5-206ENST00000409987 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
LSM5-206ENST00000409987 ZBTB47Q9UFB7 747 aaPredicted RBP12.57□□□□□ -0.4
LSM5-206ENST00000409987 REM2Q8IYK8 340 aaPredicted RBP12.53□□□□□ -0.4
LSM5-206ENST00000409987 PLCB2Q00722 1185 aa12.5□□□□□ -0.41
LSM5-206ENST00000409987 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
LSM5-206ENST00000409987 CIZ1Q9ULV3 898 aaPredicted RBP12.48□□□□□ -0.41
LSM5-206ENST00000409987 RGL2O15211 777 aa12.47□□□□□ -0.41
LSM5-206ENST00000409987 CREBZFQ9NS37 354 aa12.45□□□□□ -0.42
LSM5-206ENST00000409987 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
LSM5-206ENST00000409987 NUBP1P53384 320 aa12.41□□□□□ -0.42
LSM5-206ENST00000409987 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
LSM5-206ENST00000409987 PITPNM1O00562 1244 aa12.39□□□□□ -0.43
LSM5-206ENST00000409987 MNX1P50219 401 aaPredicted RBP12.38□□□□□ -0.43
LSM5-206ENST00000409987 TRIM41Q8WV44 630 aa12.35□□□□□ -0.43
LSM5-206ENST00000409987 GSE1Q14687 1217 aa12.34□□□□□ -0.43
LSM5-206ENST00000409987 BBXQ8WY36 941 aaPredicted RBP12.34□□□□□ -0.43
LSM5-206ENST00000409987 HAP1P54257 671 aaPredicted RBP12.31□□□□□ -0.44
LSM5-206ENST00000409987 DCAF8Q5TAQ9 597 aa12.29□□□□□ -0.44
LSM5-206ENST00000409987 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
LSM5-206ENST00000409987 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.28□□□□□ -0.44
LSM5-206ENST00000409987 RNF25Q96BH1 459 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms