Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC15.35■□□□□ 0.053e-16■■■■■ 170.4
DDX55Q8NHQ9 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.681e-38■■■■■ 121.2
DDX55Q8NHQ9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.982e-35■■■■■ 100.7
DDX55Q8NHQ9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.97■□□□□ 0.952e-35■■■■■ 100.7
DDX55Q8NHQ9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.71■□□□□ 0.752e-35■■■■■ 100.7
DDX55Q8NHQ9 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.42e-35■■■■■ 100.7
DDX55Q8NHQ9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.28■□□□□ 0.362e-35■■■■■ 100.7
DDX55Q8NHQ9 ELOF1-207ENST00000591674 679 ntTSL 2 BASIC10.18□□□□□ -0.782e-35■■■■■ 100.7
DDX55Q8NHQ9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC29.35■■■□□ 2.291e-32■■■■■ 75.3
DDX55Q8NHQ9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.411e-32■■■■■ 75.3
DDX55Q8NHQ9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.02■□□□□ 0.961e-32■■■■■ 75.3
DDX55Q8NHQ9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.661e-32■■■■■ 75.3
DDX55Q8NHQ9 CSTF1-206ENST00000493039 2234 ntTSL 511.05□□□□□ -0.642e-10■■■■■ 63.8
DDX55Q8NHQ9 CSTF1-201ENST00000217109 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.792e-10■■■■■ 63.8
DDX55Q8NHQ9 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.163e-20■■■■■ 60.4
DDX55Q8NHQ9 MTA2-202ENST00000524902 2577 ntTSL 1 (best) BASIC13.11□□□□□ -0.313e-20■■■■■ 60.4
DDX55Q8NHQ9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.24■■■■□ 3.075e-8■■■■■ 57.5
DDX55Q8NHQ9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.69■■■□□ 2.665e-8■■■■■ 57.5
DDX55Q8NHQ9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.35e-8■■■■■ 57.5
DDX55Q8NHQ9 SSBP4-203ENST00000593641 900 ntTSL 528.35■■■□□ 2.135e-8■■■■■ 57.5
DDX55Q8NHQ9 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.22e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.15■□□□□ 0.022e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-206ENST00000431368 3050 ntTSL 514.29□□□□□ -0.122e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-212ENST00000452656 2763 ntTSL 1 (best)13.73□□□□□ -0.212e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC13.16□□□□□ -0.32e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-208ENST00000437268 3580 ntTSL 2 BASIC12.89□□□□□ -0.352e-12■■■■■ 57.4
DDX55Q8NHQ9 OSBP2-204ENST00000407373 3669 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.462e-12■■■■■ 57.4
DDX55Q8NHQ9 CFI-207ENST00000618244 1345 ntTSL 5 BASIC9.86□□□□□ -0.835e-12■■■■■ 55.9
DDX55Q8NHQ9 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.15e-12■■■■■ 55.9
DDX55Q8NHQ9 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.235e-12■■■■■ 55.9
DDX55Q8NHQ9 CFI-203ENST00000504853 2368 ntTSL 26.74□□□□□ -1.335e-12■■■■■ 55.9
DDX55Q8NHQ9 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.485e-12■■■■■ 55.9
DDX55Q8NHQ9 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.25■□□□□ 0.835e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-240ENST00000636871 2076 ntTSL 520.17■□□□□ 0.825e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-251ENST00000637684 2168 ntTSL 519.96■□□□□ 0.795e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-247ENST00000637455 1512 ntTSL 519.74■□□□□ 0.755e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-243ENST00000637059 1324 ntTSL 519.64■□□□□ 0.735e-9■■■■■ 55.3
DDX55Q8NHQ9 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.735e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-252ENST00000637821 2026 ntTSL 519.32■□□□□ 0.685e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-208ENST00000636461 5083 ntTSL 519.32■□□□□ 0.685e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-229ENST00000636070 1827 ntTSL 219.04■□□□□ 0.645e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-205ENST00000430521 798 ntTSL 518.94■□□□□ 0.625e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.94■□□□□ 0.625e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.82■□□□□ 0.65e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-238ENST00000636803 1945 ntTSL 518.77■□□□□ 0.65e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.565e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-241ENST00000636978 1613 ntTSL 518.49■□□□□ 0.555e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-203ENST00000399379 977 ntTSL 518.48■□□□□ 0.555e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.27■□□□□ 0.525e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-254ENST00000637982 2330 ntTSL 518.14■□□□□ 0.495e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-211ENST00000476127 2152 ntTSL 518.13■□□□□ 0.495e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.07■□□□□ 0.485e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-228ENST00000636023 1780 ntTSL 517.8■□□□□ 0.445e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-213ENST00000476828 1872 ntTSL 317.73■□□□□ 0.435e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-227ENST00000635936 2223 ntTSL 517.61■□□□□ 0.415e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.6■□□□□ 0.415e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.6■□□□□ 0.415e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-214ENST00000478594 2110 ntTSL 517.59■□□□□ 0.415e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-225ENST00000635889 2260 ntTSL 517.44■□□□□ 0.385e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-234ENST00000636587 2040 ntTSL 517.21■□□□□ 0.355e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-257ENST00000638092 2448 ntTSL 517.08■□□□□ 0.335e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-255ENST00000637994 2468 ntTSL 517.01■□□□□ 0.315e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-244ENST00000637114 1991 ntTSL 516.87■□□□□ 0.295e-9■■■■■ 55.3
DDX55Q8NHQ9 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.255e-9■■■■■ 55.3
DDX55Q8NHQ9 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.255e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-256ENST00000638063 1783 ntTSL 5 BASIC16.59■□□□□ 0.255e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-222ENST00000635772 2768 ntTSL 516.19■□□□□ 0.185e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-212ENST00000476226 2379 ntTSL 516.11■□□□□ 0.175e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-246ENST00000637291 2662 ntTSL 515.81■□□□□ 0.125e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-248ENST00000637457 2815 ntTSL 515.7■□□□□ 0.15e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.15e-9■■■■■ 55.3
DDX55Q8NHQ9 DDX54-206ENST00000549271 756 ntTSL 215.57■□□□□ 0.085e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-219ENST00000495436 843 ntTSL 215.43■□□□□ 0.065e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-245ENST00000637268 2855 ntTSL 515.38■□□□□ 0.055e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-237ENST00000636725 2677 ntTSL 515.37■□□□□ 0.055e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-216ENST00000487589 811 ntTSL 515.36■□□□□ 0.055e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.045e-9■■■■■ 55.3
DDX55Q8NHQ9 ARPC5-203ENST00000367534 622 ntTSL 3 BASIC15.11■□□□□ 0.015e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-226ENST00000635907 876 ntTSL 514.67□□□□□ -0.065e-9■■■■■ 55.3
DDX55Q8NHQ9 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.085e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-221ENST00000538581 2038 ntTSL 2 BASIC14.49□□□□□ -0.095e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-242ENST00000636991 2403 ntTSL 514.48□□□□□ -0.095e-9■■■■■ 55.3
DDX55Q8NHQ9 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.145e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-215ENST00000480957 3243 ntTSL 414.19□□□□□ -0.145e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-206ENST00000637088 6740 ntTSL 514.14□□□□□ -0.155e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-223ENST00000635798 1276 ntTSL 513.89□□□□□ -0.195e-9■■■■■ 55.3
DDX55Q8NHQ9 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.215e-9■■■■■ 55.3
DDX55Q8NHQ9 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.215e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-202ENST00000636204 3240 ntTSL 513.67□□□□□ -0.225e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-218ENST00000493046 3504 ntTSL 513.22□□□□□ -0.295e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-204ENST00000637442 4178 ntTSL 513.22□□□□□ -0.295e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-217ENST00000491800 3780 nt12.96□□□□□ -0.335e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-236ENST00000636597 1509 ntTSL 5 BASIC12.94□□□□□ -0.345e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-210ENST00000473163 4544 ntTSL 212.82□□□□□ -0.365e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-205ENST00000638079 3146 ntTSL 512.71□□□□□ -0.375e-9■■■■■ 55.3
DDX55Q8NHQ9 ARPC5-202ENST00000359856 7209 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.385e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-201ENST00000638115 4453 ntTSL 512.38□□□□□ -0.435e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-230ENST00000636148 3865 ntTSL 512.24□□□□□ -0.455e-9■■■■■ 55.3
DDX55Q8NHQ9 AC104452.1-207ENST00000638014 4510 ntTSL 512.2□□□□□ -0.465e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-253ENST00000637914 3677 ntTSL 512.1□□□□□ -0.475e-9■■■■■ 55.3
Retrieved 100 of 15,504 protein–RNA pairs in 54 ms