Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 SNORD10-201ENST00000459579 142 ntBASIC15.27■□□□□ 0.041e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC14.06□□□□□ -0.161e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-218ENST00000581544 1444 ntTSL 213.96□□□□□ -0.181e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-229ENST00000583802 563 ntTSL 413.61□□□□□ -0.231e-323■■■□□ 14.6
NIP7Q9Y221 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC13.39□□□□□ -0.271e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-209ENST00000578495 916 ntTSL 512.7□□□□□ -0.381e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-217ENST00000581384 642 ntTSL 512.55□□□□□ -0.41e-323■■■□□ 14.6
NIP7Q9Y221 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.41e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-233ENST00000584784 818 ntTSL 512.1□□□□□ -0.471e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-237ENST00000585024 577 ntTSL 411.43□□□□□ -0.581e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-202ENST00000396527 1169 ntTSL 29.15□□□□□ -0.941e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-211ENST00000578754 547 ntTSL 47.04□□□□□ -1.281e-323■■■□□ 14.6
NIP7Q9Y221 EIF4A1-204ENST00000577731 574 ntTSL 23.55□□□□□ -1.841e-323■■■□□ 14.6
NIP7Q9Y221 RPL4-216ENST00000569438 565 ntTSL 518.91■□□□□ 0.622e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-212ENST00000566622 817 ntTSL 218.13■□□□□ 0.492e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-214ENST00000567229 2003 ntTSL 514.82□□□□□ -0.042e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-217ENST00000569696 569 ntTSL 514.53□□□□□ -0.082e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC14.21□□□□□ -0.132e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-205ENST00000564439 582 ntTSL 313.74□□□□□ -0.212e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.492e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-210ENST00000566039 1099 ntTSL 211.64□□□□□ -0.552e-20■■■□□ 14.6
NIP7Q9Y221 RPL4-203ENST00000561775 1396 ntTSL 59.74□□□□□ -0.852e-20■■■□□ 14.6
NIP7Q9Y221 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC11.03□□□□□ -0.646e-10■■□□□ 14.5
NIP7Q9Y221 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.81e-323■■□□□ 14.5
NIP7Q9Y221 FN1-221ENST00000480737 384 ntTSL 22.89□□□□□ -1.956e-40■■□□□ 14.4
NIP7Q9Y221 MATR3-235ENST00000506147 580 ntTSL 419.91■□□□□ 0.781e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-239ENST00000514694 587 ntTSL 419.84■□□□□ 0.771e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-238ENST00000512107 579 ntTSL 418.56■□□□□ 0.561e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-203ENST00000506188 801 ntTSL 418.26■□□□□ 0.511e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-236ENST00000509644 750 ntTSL 317.29■□□□□ 0.361e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-201ENST00000448190 542 ntTSL 417.25■□□□□ 0.351e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC16.99■□□□□ 0.311e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-234ENST00000505016 664 ntTSL 216.18■□□□□ 0.181e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-206ENST00000508735 310 ntTSL 1 (best)16.18■□□□□ 0.181e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-208ENST00000514110 679 ntTSL 1 (best)16.18■□□□□ 0.181e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-202ENST00000505522 629 ntTSL 1 (best)16.18■□□□□ 0.181e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC15.24■□□□□ 0.031e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-231ENST00000502394 589 ntTSL 415.18■□□□□ 0.021e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-237ENST00000509990 3249 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.091e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-207ENST00000513259 444 ntTSL 511.9□□□□□ -0.51e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.851e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC9.63□□□□□ -0.871e-323■■□□□ 14.4
NIP7Q9Y221 SNORA74A-201ENST00000364089 198 ntBASIC7.3□□□□□ -1.241e-323■■□□□ 14.4
NIP7Q9Y221 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.58□□□□□ -1.361e-323■■□□□ 14.4
NIP7Q9Y221 SNHG4-205ENST00000507692 575 ntTSL 56.5□□□□□ -1.371e-323■■□□□ 14.4
NIP7Q9Y221 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.363e-8■■□□□ 14.3
NIP7Q9Y221 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.27■□□□□ 0.683e-8■■□□□ 14.3
NIP7Q9Y221 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.69■□□□□ 0.583e-8■■□□□ 14.3
NIP7Q9Y221 C4A-254ENST00000480795 570 ntTSL 217.16■□□□□ 0.343e-8■■□□□ 14.3
NIP7Q9Y221 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC17.14■□□□□ 0.333e-8■■□□□ 14.3
NIP7Q9Y221 C3-205ENST00000595577 714 ntTSL 216.38■□□□□ 0.214e-20■■□□□ 14.3
NIP7Q9Y221 SLC1A5-204ENST00000593713 774 ntTSL 314.56□□□□□ -0.083e-8■■□□□ 14.3
NIP7Q9Y221 GSN-202ENST00000373807 2823 ntTSL 217.79■□□□□ 0.442e-7■■□□□ 14.3
NIP7Q9Y221 GSN-214ENST00000485767 6454 ntTSL 1 (best)11.69□□□□□ -0.542e-7■■□□□ 14.3
NIP7Q9Y221 SNORD3B-1-201ENST00000577988 758 ntBASIC17.86■□□□□ 0.456e-10■■□□□ 14.2
NIP7Q9Y221 SNORD3B-1-203ENST00000631292 217 nt14.15□□□□□ -0.146e-10■■□□□ 14.2
NIP7Q9Y221 SNORD3B-1-202ENST00000617128 218 nt13.85□□□□□ -0.196e-10■■□□□ 14.2
NIP7Q9Y221 EEF2-205ENST00000598436 549 ntTSL 216.38■□□□□ 0.214e-7■■□□□ 14.2
NIP7Q9Y221 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.174e-7■■□□□ 14.2
NIP7Q9Y221 SNHG16-205ENST00000587743 2665 nt17.85■□□□□ 0.455e-15■■□□□ 14.1
NIP7Q9Y221 SNORD1C-201ENST00000363315 78 ntBASIC6.95□□□□□ -1.35e-15■■□□□ 14.1
NIP7Q9Y221 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC13.98□□□□□ -0.175e-10■■□□□ 14.1
NIP7Q9Y221 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC9.43□□□□□ -0.95e-10■■□□□ 14.1
NIP7Q9Y221 RPL17-201ENST00000578528 481 ntTSL 329.65■■■□□ 2.342e-27■■□□□ 14
NIP7Q9Y221 RPL17-206ENST00000579495 914 ntTSL 225.94■■□□□ 1.742e-27■■□□□ 14
NIP7Q9Y221 RPL17-209ENST00000580387 827 ntTSL 522.47■■□□□ 1.192e-27■■□□□ 14
NIP7Q9Y221 RPL17-221ENST00000615760 650 ntTSL 322.08■■□□□ 1.132e-27■■□□□ 14
NIP7Q9Y221 RPL17-220ENST00000615479 586 ntTSL 515.1■□□□□ 0.012e-27■■□□□ 14
NIP7Q9Y221 RPL17-222ENST00000617346 795 ntTSL 513.9□□□□□ -0.182e-27■■□□□ 14
NIP7Q9Y221 RPL17-211ENST00000581305 593 ntTSL 512.31□□□□□ -0.442e-27■■□□□ 14
NIP7Q9Y221 RPL17-217ENST00000583036 576 ntTSL 37.72□□□□□ -1.172e-27■■□□□ 14
NIP7Q9Y221 RPL17-215ENST00000582782 562 ntTSL 33.93□□□□□ -1.782e-27■■□□□ 14
NIP7Q9Y221 RPL17-203ENST00000578966 563 ntTSL 1 (best)2.95□□□□□ -1.942e-27■■□□□ 14
NIP7Q9Y221 SNORD58B-201ENST00000607313 66 ntBASIC1.46□□□□□ -2.182e-27■■□□□ 14
NIP7Q9Y221 RPS13-203ENST00000525828 664 ntTSL 222.66■■□□□ 1.226e-10■■□□□ 13.9
NIP7Q9Y221 RPS13-204ENST00000526895 561 ntTSL 318.95■□□□□ 0.626e-10■■□□□ 13.9
NIP7Q9Y221 RPS13-201ENST00000228140 491 ntTSL 2 BASIC13.74□□□□□ -0.216e-10■■□□□ 13.9
NIP7Q9Y221 RPS13-202ENST00000525634 646 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.446e-10■■□□□ 13.9
NIP7Q9Y221 RPS13-208ENST00000531908 746 ntTSL 25.16□□□□□ -1.586e-10■■□□□ 13.9
NIP7Q9Y221 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.661e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-202ENST00000578532 684 ntTSL 224.79■■□□□ 1.561e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-218ENST00000583637 758 ntTSL 324.79■■□□□ 1.561e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-223ENST00000618613 856 ntAPPRIS P1 TSL 322.26■■□□□ 1.151e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-C18orf32-201ENST00000332968 948 ntTSL 5 BASIC15.41■□□□□ 0.061e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.181e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-207ENST00000580210 705 ntTSL 2 BASIC12.74□□□□□ -0.371e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-205ENST00000579408 859 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.41e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-212ENST00000581373 584 ntTSL 2 BASIC11.34□□□□□ -0.591e-27■■□□□ 13.8
NIP7Q9Y221 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.971e-27■■□□□ 13.8
NIP7Q9Y221 ATP2A2-203ENST00000377685 5702 ntTSL 524.52■■□□□ 1.527e-6■■□□□ 13.6
NIP7Q9Y221 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.957e-6■■□□□ 13.6
NIP7Q9Y221 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.457e-6■■□□□ 13.6
NIP7Q9Y221 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.177e-6■■□□□ 13.6
NIP7Q9Y221 ATP2A2-207ENST00000548169 2951 ntTSL 29.36□□□□□ -0.917e-6■■□□□ 13.6
NIP7Q9Y221 NCL-207ENST00000461347 3967 ntTSL 216.29■□□□□ 0.29e-58■■□□□ 13.6
NIP7Q9Y221 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.179e-58■■□□□ 13.6
NIP7Q9Y221 GSN-207ENST00000432226 1042 ntTSL 522.87■■□□□ 1.252e-7■■□□□ 13.6
NIP7Q9Y221 GSN-212ENST00000477863 716 ntTSL 420.68■□□□□ 0.92e-7■■□□□ 13.6
NIP7Q9Y221 GSN-210ENST00000477104 806 ntTSL 420.2■□□□□ 0.822e-7■■□□□ 13.6
NIP7Q9Y221 CRLF1-203ENST00000594325 1020 ntTSL 329.64■■■□□ 2.341e-7■■□□□ 13.5
Retrieved 100 of 1,619 protein–RNA pairs in 117.8 ms