RNA–Protein interactions for RNA: ENST00000514110.5

SNHG4-208, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 1 (best)

Gene SNHG4, Length 679 nt, Biotype retained intron, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-208ENST00000514110 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
SNHG4-208ENST00000514110 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
SNHG4-208ENST00000514110 ABCC9O60706 1549 aa27.42■■□□□ 1.98
SNHG4-208ENST00000514110 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
SNHG4-208ENST00000514110 NACADO15069 1562 aa25.93■■□□□ 1.74
SNHG4-208ENST00000514110 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
SNHG4-208ENST00000514110 DNAJC5BQ9UF47 199 aa25.71■■□□□ 1.71
SNHG4-208ENST00000514110 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.68
SNHG4-208ENST00000514110 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
SNHG4-208ENST00000514110 UNC13AQ9UPW8 1703 aa25.53■■□□□ 1.68
SNHG4-208ENST00000514110 ZCCHC6Q5VYS8 1495 aaKnown RBP25.39■■□□□ 1.65
SNHG4-208ENST00000514110 BICRAQ9NZM4 1560 aa25.37■■□□□ 1.65
SNHG4-208ENST00000514110 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
SNHG4-208ENST00000514110 SCRIBQ14160 1630 aa25.03■■□□□ 1.6
SNHG4-208ENST00000514110 SHROOM4Q9ULL8 1493 aa24.97■■□□□ 1.59
SNHG4-208ENST00000514110 CC2D2AQ9P2K1 1620 aa24.77■■□□□ 1.56
SNHG4-208ENST00000514110 EIF4G1Q04637 1599 aaKnown RBP24.72■■□□□ 1.55
SNHG4-208ENST00000514110 CECR2Q9BXF3 1484 aa24.68■■□□□ 1.54
SNHG4-208ENST00000514110 NCAPD3P42695 1498 aa23.94■■□□□ 1.42
SNHG4-208ENST00000514110 ATAD2BQ9ULI0 1458 aa23.89■■□□□ 1.42
SNHG4-208ENST00000514110 SMARCA4P51532 1647 aa23.88■■□□□ 1.41
SNHG4-208ENST00000514110 SMARCA2P51531 1590 aa23.8■■□□□ 1.4
SNHG4-208ENST00000514110 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
SNHG4-208ENST00000514110 BAZ1AQ9NRL2 1556 aaPredicted RBP23.74■■□□□ 1.39
SNHG4-208ENST00000514110 BAZ1BQ9UIG0 1483 aaKnown RBP23.65■■□□□ 1.38
SNHG4-208ENST00000514110 ERCC6Q03468 1493 aa23.64■■□□□ 1.38
SNHG4-208ENST00000514110 PEG3Q9GZU2 1588 aa23.64■■□□□ 1.37
SNHG4-208ENST00000514110 MROH2BQ7Z745 1585 aa23.61■■□□□ 1.37
SNHG4-208ENST00000514110 CUX2O14529 1486 aa23.58■■□□□ 1.37
SNHG4-208ENST00000514110 NESP48681 1621 aa23.58■■□□□ 1.36
SNHG4-208ENST00000514110 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
SNHG4-208ENST00000514110 LAMC3Q9Y6N6 1575 aa23.39■■□□□ 1.33
SNHG4-208ENST00000514110 WIZO95785 1651 aa23.33■■□□□ 1.33
SNHG4-208ENST00000514110 THOC2Q8NI27 1593 aaKnown RBP23.32■■□□□ 1.32
SNHG4-208ENST00000514110 KIF21AQ7Z4S6 1674 aa23.27■■□□□ 1.32
SNHG4-208ENST00000514110 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
SNHG4-208ENST00000514110 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
SNHG4-208ENST00000514110 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
SNHG4-208ENST00000514110 MRC2Q9UBG0 1479 aa23.06■■□□□ 1.28
SNHG4-208ENST00000514110 TOP2AP11388 1531 aaKnown RBP23.02■■□□□ 1.28
SNHG4-208ENST00000514110 WDR62O43379 1518 aa23.01■■□□□ 1.27
SNHG4-208ENST00000514110 CFTRP13569 1480 aa22.98■■□□□ 1.27
SNHG4-208ENST00000514110 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
SNHG4-208ENST00000514110 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
SNHG4-208ENST00000514110 URB2Q14146 1524 aaKnown RBP22.78■■□□□ 1.24
SNHG4-208ENST00000514110 CCDC88BA6NC98 1476 aa22.78■■□□□ 1.24
SNHG4-208ENST00000514110 PRDM2Q13029 1718 aa22.74■■□□□ 1.23
SNHG4-208ENST00000514110 TOPBP1Q92547 1522 aa22.53■■□□□ 1.2
SNHG4-208ENST00000514110 TRIM41Q8WV44 630 aa22.53■■□□□ 1.2
SNHG4-208ENST00000514110 OSCARQ8IYS5 282 aa22.52■■□□□ 1.2
SNHG4-208ENST00000514110 IFT140Q96RY7 1462 aa22.5■■□□□ 1.19
SNHG4-208ENST00000514110 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
SNHG4-208ENST00000514110 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
SNHG4-208ENST00000514110 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
SNHG4-208ENST00000514110 EIF4G3O43432 1585 aaKnown RBP22.37■■□□□ 1.17
SNHG4-208ENST00000514110 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
SNHG4-208ENST00000514110 POLA1P09884 1462 aaPredicted RBP22.31■■□□□ 1.16
SNHG4-208ENST00000514110 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.164e-10■■■■■ 32.5
SNHG4-208ENST00000514110 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
SNHG4-208ENST00000514110 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
SNHG4-208ENST00000514110 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
SNHG4-208ENST00000514110 RAD54L2Q9Y4B4 1467 aa22.24■■□□□ 1.15
SNHG4-208ENST00000514110 SOGA1O94964 1423 aa22.21■■□□□ 1.15
SNHG4-208ENST00000514110 CHD1O14646 1710 aa22.19■■□□□ 1.14
SNHG4-208ENST00000514110 CUX1P39880 1505 aa22.18■■□□□ 1.14
SNHG4-208ENST00000514110 FGD5Q6ZNL6 1462 aa22.18■■□□□ 1.14
SNHG4-208ENST00000514110 ARHGEF11O15085 1522 aa22.17■■□□□ 1.14
SNHG4-208ENST00000514110 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
SNHG4-208ENST00000514110 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
SNHG4-208ENST00000514110 FBLN2P98095 1184 aa22.13■■□□□ 1.13
SNHG4-208ENST00000514110 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
SNHG4-208ENST00000514110 SNAPC4Q5SXM2 1469 aa22.07■■□□□ 1.12
SNHG4-208ENST00000514110 CYB5RLQ6IPT4 315 aa22■■□□□ 1.11
SNHG4-208ENST00000514110 GRIN2BQ13224 1484 aa22■■□□□ 1.11
SNHG4-208ENST00000514110 MAGI1Q96QZ7 1491 aaPredicted RBP21.99■■□□□ 1.11
SNHG4-208ENST00000514110 ARAP1Q96P48 1450 aa21.96■■□□□ 1.11
SNHG4-208ENST00000514110 CHMP7Q8WUX9 453 aaPredicted RBP21.96■■□□□ 1.11
SNHG4-208ENST00000514110 GAPVD1Q14C86 1478 aa21.94■■□□□ 1.1
SNHG4-208ENST00000514110 CLASP1Q7Z460 1538 aa21.94■■□□□ 1.1
SNHG4-208ENST00000514110 PBRM1Q86U86 1689 aa21.93■■□□□ 1.1
SNHG4-208ENST00000514110 ABCA10Q8WWZ4 1543 aa21.92■■□□□ 1.1
SNHG4-208ENST00000514110 SYNJ2O15056 1496 aa21.92■■□□□ 1.1
SNHG4-208ENST00000514110 SYNJ1O43426 1573 aa21.91■■□□□ 1.1
SNHG4-208ENST00000514110 ABCA5Q8WWZ7 1642 aa21.9■■□□□ 1.1
SNHG4-208ENST00000514110 WRNQ14191 1432 aaPredicted RBP eCLIP21.83■■□□□ 1.09
SNHG4-208ENST00000514110 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
SNHG4-208ENST00000514110 BIVM-ERCC5R4GMW8 1640 aa21.82■■□□□ 1.08
SNHG4-208ENST00000514110 TRHP20396 242 aaPredicted RBP21.73■■□□□ 1.07
SNHG4-208ENST00000514110 GRIN2AQ12879 1464 aa21.72■■□□□ 1.07
SNHG4-208ENST00000514110 ADAMTS12P58397 1594 aa21.72■■□□□ 1.07
SNHG4-208ENST00000514110 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
SNHG4-208ENST00000514110 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
SNHG4-208ENST00000514110 NUP160Q12769 1436 aa21.65■■□□□ 1.06
SNHG4-208ENST00000514110 ERICH3Q5RHP9 1530 aa21.65■■□□□ 1.06
SNHG4-208ENST00000514110 ERCC6L2Q5T890 1561 aa21.63■■□□□ 1.05
SNHG4-208ENST00000514110 SHROOM2Q13796 1616 aa21.55■■□□□ 1.04
SNHG4-208ENST00000514110 PRG4Q92954 1404 aaPredicted RBP21.44■■□□□ 1.02
SNHG4-208ENST00000514110 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
SNHG4-208ENST00000514110 JPH4Q96JJ6 628 aa21.42■■□□□ 1.02
SNHG4-208ENST00000514110 IGF1RP08069 1367 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms