RNA–Protein interactions for RNA: ENST00000461347.5

NCL-207, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-207ENST00000461347 NISCHQ9Y2I1 1504 aa27.08■■□□□ 1.93
NCL-207ENST00000461347 SUPT5HO00267 1087 aaKnown RBP24.61■■□□□ 1.53
NCL-207ENST00000461347 DCAF8L2P0C7V8 631 aa24.59■■□□□ 1.53
NCL-207ENST00000461347 SHROOM4Q9ULL8 1493 aa24.55■■□□□ 1.52
NCL-207ENST00000461347 CCDC180Q9P1Z9 1646 aa23.94■■□□□ 1.42
NCL-207ENST00000461347 PCGF6Q9BYE7 350 aa23.57■■□□□ 1.36
NCL-207ENST00000461347 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
NCL-207ENST00000461347 HRCP23327 699 aa23.14■■□□□ 1.29
NCL-207ENST00000461347 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
NCL-207ENST00000461347 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
NCL-207ENST00000461347 ZCCHC6Q5VYS8 1495 aaKnown RBP22.87■■□□□ 1.25
NCL-207ENST00000461347 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
NCL-207ENST00000461347 LOC105371045A0A1W2PR82 267 aa22.84■■□□□ 1.25
NCL-207ENST00000461347 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
NCL-207ENST00000461347 DCAF1Q9Y4B6 1507 aa22.7■■□□□ 1.22
NCL-207ENST00000461347 TRIM26Q12899 539 aaPredicted RBP22.62■■□□□ 1.21
NCL-207ENST00000461347 ZEB1P37275 1124 aaPredicted RBP22.57■■□□□ 1.2
NCL-207ENST00000461347 TTBK1Q5TCY1 1321 aaPredicted RBP22.52■■□□□ 1.2
NCL-207ENST00000461347 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
NCL-207ENST00000461347 CCER1Q8TC90 406 aaPredicted RBP22.34■■□□□ 1.17
NCL-207ENST00000461347 PELP1Q8IZL8 1130 aaKnown RBP22.15■■□□□ 1.14
NCL-207ENST00000461347 CENPBP07199 599 aaPredicted RBP22.09■■□□□ 1.13
NCL-207ENST00000461347 NACADO15069 1562 aa22.03■■□□□ 1.12
NCL-207ENST00000461347 APLP2Q06481 763 aa21.98■■□□□ 1.11
NCL-207ENST00000461347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.96■■□□□ 1.11
NCL-207ENST00000461347 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
NCL-207ENST00000461347 RANGAP1P46060 587 aaPredicted RBP21.9■■□□□ 1.1
NCL-207ENST00000461347 YTHDC1Q96MU7 727 aaKnown RBP21.88■■□□□ 1.09
NCL-207ENST00000461347 ABCC9O60706 1549 aa21.81■■□□□ 1.08
NCL-207ENST00000461347 UNC13AQ9UPW8 1703 aa21.74■■□□□ 1.07
NCL-207ENST00000461347 RB1CC1Q8TDY2 1594 aa21.72■■□□□ 1.07
NCL-207ENST00000461347 DIEXFQ68CQ4 756 aaKnown RBP21.69■■□□□ 1.06
NCL-207ENST00000461347 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
NCL-207ENST00000461347 GTF3C3Q9Y5Q9 886 aa21.52■■□□□ 1.03
NCL-207ENST00000461347 SCRIBQ14160 1630 aa21.52■■□□□ 1.03
NCL-207ENST00000461347 MYT1Q01538 1121 aa21.48■■□□□ 1.03
NCL-207ENST00000461347 SCAF1Q9H7N4 1312 aaKnown RBP21.48■■□□□ 1.03
NCL-207ENST00000461347 ACIN1Q9UKV3 1341 aaKnown RBP21.45■■□□□ 1.02
NCL-207ENST00000461347 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.02
NCL-207ENST00000461347 BICRAQ9NZM4 1560 aa21.32■■□□□ 1
NCL-207ENST00000461347 NEUROD1Q13562 356 aa21.31■■□□□ 1
NCL-207ENST00000461347 ZNF316A6NFI3 1004 aaPredicted RBP21.25■□□□□ 0.99
NCL-207ENST00000461347 ITGAEP38570 1179 aa21.24■□□□□ 0.99
NCL-207ENST00000461347 ATP1B4Q9UN42 357 aaPredicted RBP21.21■□□□□ 0.99
NCL-207ENST00000461347 CSRNP3Q8WYN3 585 aa21.19■□□□□ 0.98
NCL-207ENST00000461347 PABPN1Q86U42 306 aaKnown RBP eCLIP21.12■□□□□ 0.97
NCL-207ENST00000461347 NEFLP07196 543 aa20.99■□□□□ 0.95
NCL-207ENST00000461347 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
NCL-207ENST00000461347 MIER1Q8N108 512 aa20.89■□□□□ 0.93
NCL-207ENST00000461347 CEP162Q5TB80 1403 aa20.88■□□□□ 0.93
NCL-207ENST00000461347 PEG3Q9GZU2 1588 aa20.88■□□□□ 0.93
NCL-207ENST00000461347 SMARCA4P51532 1647 aa20.88■□□□□ 0.93
NCL-207ENST00000461347 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
NCL-207ENST00000461347 MROH2BQ7Z745 1585 aa20.85■□□□□ 0.93
NCL-207ENST00000461347 ERICH6Q7L0X2 663 aa20.8■□□□□ 0.92
NCL-207ENST00000461347 BCANQ96GW7 911 aa20.78■□□□□ 0.92
NCL-207ENST00000461347 WIZO95785 1651 aa20.75■□□□□ 0.91
NCL-207ENST00000461347 FAM50AQ14320 339 aaKnown RBP20.72■□□□□ 0.91
NCL-207ENST00000461347 TNIKQ9UKE5 1360 aa20.7■□□□□ 0.9
NCL-207ENST00000461347 SOGA1O94964 1423 aa20.66■□□□□ 0.9
NCL-207ENST00000461347 CLIP1P30622 1438 aa20.66■□□□□ 0.9
NCL-207ENST00000461347 EIF4G1Q04637 1599 aaKnown RBP20.62■□□□□ 0.89
NCL-207ENST00000461347 GOLGA3Q08378 1498 aa20.61■□□□□ 0.89
NCL-207ENST00000461347 EEA1Q15075 1411 aa20.6■□□□□ 0.89
NCL-207ENST00000461347 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
NCL-207ENST00000461347 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
NCL-207ENST00000461347 TOP2AP11388 1531 aaKnown RBP20.58■□□□□ 0.88
NCL-207ENST00000461347 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
NCL-207ENST00000461347 P3H3Q8IVL6 736 aa20.5■□□□□ 0.87
NCL-207ENST00000461347 CNGB1Q14028 1251 aaPredicted RBP20.48■□□□□ 0.87
NCL-207ENST00000461347 ANP32CO43423 234 aa20.46■□□□□ 0.87
NCL-207ENST00000461347 DDX10Q13206 875 aaKnown RBP20.46■□□□□ 0.87
NCL-207ENST00000461347 FKBP8Q14318 412 aa20.43■□□□□ 0.86
NCL-207ENST00000461347 CLSPNQ9HAW4 1339 aa20.42■□□□□ 0.86
NCL-207ENST00000461347 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
NCL-207ENST00000461347 CEP164Q9UPV0 1460 aa20.41■□□□□ 0.86
NCL-207ENST00000461347 POLR3GLQ9BT43 218 aa20.41■□□□□ 0.86
NCL-207ENST00000461347 HMGXB3Q12766 1538 aa20.38■□□□□ 0.85
NCL-207ENST00000461347 ATAD2BQ9ULI0 1458 aa20.36■□□□□ 0.85
NCL-207ENST00000461347 HIRIP3Q9BW71 556 aaPredicted RBP20.33■□□□□ 0.85
NCL-207ENST00000461347 RUSC2Q8N2Y8 1516 aa20.32■□□□□ 0.84
NCL-207ENST00000461347 TRIM52Q96A61 297 aa20.32■□□□□ 0.84
NCL-207ENST00000461347 SUPT16HQ9Y5B9 1047 aaKnown RBP20.27■□□□□ 0.83
NCL-207ENST00000461347 VPS8Q8N3P4 1428 aa20.26■□□□□ 0.83
NCL-207ENST00000461347 NCAPD3P42695 1498 aa20.26■□□□□ 0.83
NCL-207ENST00000461347 KANK4Q5T7N3 995 aaPredicted RBP20.19■□□□□ 0.82
NCL-207ENST00000461347 CDK11AQ9UQ88 783 aaPredicted RBP20.19■□□□□ 0.82
NCL-207ENST00000461347 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
NCL-207ENST00000461347 TONSLQ96HA7 1378 aa20.17■□□□□ 0.82
NCL-207ENST00000461347 BAZ1BQ9UIG0 1483 aaKnown RBP20.15■□□□□ 0.82
NCL-207ENST00000461347 HNRNPUQ00839 825 aaKnown RBP eCLIP20.15■□□□□ 0.82
NCL-207ENST00000461347 SIN3AQ96ST3 1273 aa20.13■□□□□ 0.81
NCL-207ENST00000461347 CC2D2AQ9P2K1 1620 aa20.12■□□□□ 0.81
NCL-207ENST00000461347 ARID3CA6NKF2 412 aa20.09■□□□□ 0.81
NCL-207ENST00000461347 CCNB3Q8WWL7 1395 aa20.08■□□□□ 0.8
NCL-207ENST00000461347 IRX6P78412 446 aaPredicted RBP20.07■□□□□ 0.8
NCL-207ENST00000461347 RAPGEF2Q9Y4G8 1499 aa20.06■□□□□ 0.8
NCL-207ENST00000461347 BCL11AQ9H165 835 aa20.06■□□□□ 0.8
NCL-207ENST00000461347 ZNF326Q5BKZ1 582 aaKnown RBP20.05■□□□□ 0.8
NCL-207ENST00000461347 KIF27Q86VH2 1401 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms