RNA–Protein interactions for RNA: ENST00000448190.6

SNHG4-201, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 4

Gene SNHG4, Length 542 nt, Biotype processed transcript, Subcellular localisation Nucleoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-201ENST00000448190 NISCHQ9Y2I1 1504 aa32.03■■■□□ 2.72
SNHG4-201ENST00000448190 CCDC180Q9P1Z9 1646 aa28.19■■■□□ 2.1
SNHG4-201ENST00000448190 ABCC9O60706 1549 aa27.9■■■□□ 2.06
SNHG4-201ENST00000448190 DCAF8L2P0C7V8 631 aa27.14■■□□□ 1.94
SNHG4-201ENST00000448190 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
SNHG4-201ENST00000448190 ZCCHC6Q5VYS8 1495 aaKnown RBP26.64■■□□□ 1.86
SNHG4-201ENST00000448190 NACADO15069 1562 aa26.63■■□□□ 1.85
SNHG4-201ENST00000448190 MYO15BQ96JP2 1530 aa26.42■■□□□ 1.82
SNHG4-201ENST00000448190 DCAF1Q9Y4B6 1507 aa26.37■■□□□ 1.81
SNHG4-201ENST00000448190 PABPN1Q86U42 306 aaKnown RBP eCLIP26.26■■□□□ 1.79
SNHG4-201ENST00000448190 SCRIBQ14160 1630 aa25.97■■□□□ 1.75
SNHG4-201ENST00000448190 UNC13AQ9UPW8 1703 aa25.9■■□□□ 1.74
SNHG4-201ENST00000448190 BICRAQ9NZM4 1560 aa25.88■■□□□ 1.73
SNHG4-201ENST00000448190 DNAJC5BQ9UF47 199 aa25.71■■□□□ 1.71
SNHG4-201ENST00000448190 SHROOM4Q9ULL8 1493 aa25.65■■□□□ 1.7
SNHG4-201ENST00000448190 EIF4G1Q04637 1599 aaKnown RBP25.19■■□□□ 1.62
SNHG4-201ENST00000448190 CC2D2AQ9P2K1 1620 aa25.09■■□□□ 1.61
SNHG4-201ENST00000448190 CECR2Q9BXF3 1484 aa25.07■■□□□ 1.6
SNHG4-201ENST00000448190 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
SNHG4-201ENST00000448190 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
SNHG4-201ENST00000448190 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
SNHG4-201ENST00000448190 ATAD2BQ9ULI0 1458 aa24.73■■□□□ 1.55
SNHG4-201ENST00000448190 NCAPD3P42695 1498 aa24.68■■□□□ 1.54
SNHG4-201ENST00000448190 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
SNHG4-201ENST00000448190 RSF1Q96T23 1441 aaPredicted RBP24.53■■□□□ 1.52
SNHG4-201ENST00000448190 BAZ1BQ9UIG0 1483 aaKnown RBP24.51■■□□□ 1.51
SNHG4-201ENST00000448190 PEG3Q9GZU2 1588 aa24.45■■□□□ 1.5
SNHG4-201ENST00000448190 HMGXB3Q12766 1538 aa24.43■■□□□ 1.5
SNHG4-201ENST00000448190 WIZO95785 1651 aa24.42■■□□□ 1.5
SNHG4-201ENST00000448190 SUPT5HO00267 1087 aaKnown RBP24.22■■□□□ 1.47
SNHG4-201ENST00000448190 NESP48681 1621 aa24.15■■□□□ 1.46
SNHG4-201ENST00000448190 TOP2AP11388 1531 aaKnown RBP24.11■■□□□ 1.45
SNHG4-201ENST00000448190 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
SNHG4-201ENST00000448190 ERCC6Q03468 1493 aa24■■□□□ 1.43
SNHG4-201ENST00000448190 CCDC88BA6NC98 1476 aa23.98■■□□□ 1.43
SNHG4-201ENST00000448190 LAMC3Q9Y6N6 1575 aa23.9■■□□□ 1.42
SNHG4-201ENST00000448190 PDS5BQ9NTI5 1447 aa23.88■■□□□ 1.41
SNHG4-201ENST00000448190 CFTRP13569 1480 aa23.83■■□□□ 1.41
SNHG4-201ENST00000448190 FANCD2Q9BXW9 1451 aa23.72■■□□□ 1.39
SNHG4-201ENST00000448190 KIF21AQ7Z4S6 1674 aa23.65■■□□□ 1.38
SNHG4-201ENST00000448190 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.38
SNHG4-201ENST00000448190 CUX2O14529 1486 aa23.59■■□□□ 1.37
SNHG4-201ENST00000448190 MRC2Q9UBG0 1479 aa23.59■■□□□ 1.37
SNHG4-201ENST00000448190 THOC2Q8NI27 1593 aaKnown RBP23.55■■□□□ 1.36
SNHG4-201ENST00000448190 URB2Q14146 1524 aaKnown RBP23.47■■□□□ 1.35
SNHG4-201ENST00000448190 WDR62O43379 1518 aa23.43■■□□□ 1.34
SNHG4-201ENST00000448190 TOPBP1Q92547 1522 aa23.32■■□□□ 1.32
SNHG4-201ENST00000448190 PRDM2Q13029 1718 aa23.31■■□□□ 1.32
SNHG4-201ENST00000448190 ABCC8Q09428 1581 aa23.26■■□□□ 1.31
SNHG4-201ENST00000448190 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
SNHG4-201ENST00000448190 CUX1P39880 1505 aa23.18■■□□□ 1.3
SNHG4-201ENST00000448190 IFT140Q96RY7 1462 aa23.14■■□□□ 1.29
SNHG4-201ENST00000448190 RAD54L2Q9Y4B4 1467 aa23.14■■□□□ 1.29
SNHG4-201ENST00000448190 SOGA1O94964 1423 aa23.14■■□□□ 1.29
SNHG4-201ENST00000448190 POLA1P09884 1462 aaPredicted RBP23.13■■□□□ 1.29
SNHG4-201ENST00000448190 ZNF608Q9ULD9 1512 aaPredicted RBP23.13■■□□□ 1.29
SNHG4-201ENST00000448190 WRNQ14191 1432 aaPredicted RBP eCLIP23.1■■□□□ 1.29
SNHG4-201ENST00000448190 FGD5Q6ZNL6 1462 aa23.1■■□□□ 1.29
SNHG4-201ENST00000448190 TDRD9Q8NDG6 1382 aaKnown RBP23.07■■□□□ 1.28
SNHG4-201ENST00000448190 AQRO60306 1485 aaKnown RBP eCLIP23.06■■□□□ 1.284e-10■■■■■ 32.5
SNHG4-201ENST00000448190 DNAJC5Q9H3Z4 198 aa23■■□□□ 1.27
SNHG4-201ENST00000448190 TARBP1Q13395 1621 aaKnown RBP22.98■■□□□ 1.27
SNHG4-201ENST00000448190 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
SNHG4-201ENST00000448190 FBLN2P98095 1184 aa22.91■■□□□ 1.26
SNHG4-201ENST00000448190 TOP2BQ02880 1626 aa22.9■■□□□ 1.26
SNHG4-201ENST00000448190 OSCARQ8IYS5 282 aa22.86■■□□□ 1.25
SNHG4-201ENST00000448190 EIF4G3O43432 1585 aaKnown RBP22.85■■□□□ 1.25
SNHG4-201ENST00000448190 BIVM-ERCC5R4GMW8 1640 aa22.84■■□□□ 1.25
SNHG4-201ENST00000448190 ABCA10Q8WWZ4 1543 aa22.83■■□□□ 1.25
SNHG4-201ENST00000448190 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
SNHG4-201ENST00000448190 TRIM41Q8WV44 630 aa22.8■■□□□ 1.24
SNHG4-201ENST00000448190 CHMP7Q8WUX9 453 aaPredicted RBP22.77■■□□□ 1.24
SNHG4-201ENST00000448190 GRIN2BQ13224 1484 aa22.77■■□□□ 1.24
SNHG4-201ENST00000448190 SNAPC4Q5SXM2 1469 aa22.75■■□□□ 1.23
SNHG4-201ENST00000448190 WDR97A6NE52 1622 aa22.68■■□□□ 1.22
SNHG4-201ENST00000448190 ABCA5Q8WWZ7 1642 aa22.64■■□□□ 1.21
SNHG4-201ENST00000448190 MAGI1Q96QZ7 1491 aaPredicted RBP22.63■■□□□ 1.21
SNHG4-201ENST00000448190 KIF27Q86VH2 1401 aa22.61■■□□□ 1.21
SNHG4-201ENST00000448190 IGF1RP08069 1367 aa22.61■■□□□ 1.21
SNHG4-201ENST00000448190 SYNJ2O15056 1496 aa22.59■■□□□ 1.21
SNHG4-201ENST00000448190 CHIC1Q5VXU3 224 aa22.57■■□□□ 1.2
SNHG4-201ENST00000448190 FHAD1B1AJZ9 1412 aa22.54■■□□□ 1.2
SNHG4-201ENST00000448190 RUSC2Q8N2Y8 1516 aa22.53■■□□□ 1.2
SNHG4-201ENST00000448190 PBRM1Q86U86 1689 aa22.53■■□□□ 1.2
SNHG4-201ENST00000448190 ERICH3Q5RHP9 1530 aa22.52■■□□□ 1.19
SNHG4-201ENST00000448190 CHD1O14646 1710 aa22.51■■□□□ 1.19
SNHG4-201ENST00000448190 GRIN2AQ12879 1464 aa22.46■■□□□ 1.19
SNHG4-201ENST00000448190 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
SNHG4-201ENST00000448190 ADAMTS12P58397 1594 aa22.45■■□□□ 1.18
SNHG4-201ENST00000448190 FAM9AQ8IZU1 332 aaPredicted RBP22.44■■□□□ 1.18
SNHG4-201ENST00000448190 CYB5RLQ6IPT4 315 aa22.36■■□□□ 1.17
SNHG4-201ENST00000448190 NUP160Q12769 1436 aa22.35■■□□□ 1.17
SNHG4-201ENST00000448190 CSRNP3Q8WYN3 585 aa22.34■■□□□ 1.17
SNHG4-201ENST00000448190 CLASP1Q7Z460 1538 aa22.33■■□□□ 1.17
SNHG4-201ENST00000448190 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
SNHG4-201ENST00000448190 CEP170Q5SW79 1584 aa22.31■■□□□ 1.16
SNHG4-201ENST00000448190 JPH4Q96JJ6 628 aa22.31■■□□□ 1.16
SNHG4-201ENST00000448190 RIMBP3CA6NJZ7 1639 aa22.27■■□□□ 1.16
SNHG4-201ENST00000448190 RIMBP3BA6NNM3 1639 aa22.27■■□□□ 1.16
SNHG4-201ENST00000448190 RIMBP3Q9UFD9 1639 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms