Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ST5-221ENST00000527540 367 ntTSL 219.56■□□□□ 0.723e-6■■■■□ 21.3
DDX55Q8NHQ9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.725e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRT-204ENST00000448764 1607 ntTSL 519.44■□□□□ 0.77e-9■■■■□ 21.3
DDX55Q8NHQ9 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.44■□□□□ 0.73e-6■■■■□ 21.3
DDX55Q8NHQ9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.73e-6■■■■□ 21.3
DDX55Q8NHQ9 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.74e-13■■■■□ 21.3
DDX55Q8NHQ9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.667e-9■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-231ENST00000492170 241 ntTSL 519.13■□□□□ 0.653e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-207ENST00000530437 1474 ntTSL 1 (best)19.13■□□□□ 0.653e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-226ENST00000473066 820 ntTSL 319.08■□□□□ 0.643e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.643e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.643e-6■■■■□ 21.3
DDX55Q8NHQ9 PAFAH1B2-203ENST00000526888 1099 ntTSL 218.98■□□□□ 0.637e-9■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.63e-6■■■■□ 21.3
DDX55Q8NHQ9 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.66■□□□□ 0.583e-6■■■■□ 21.3
DDX55Q8NHQ9 COX20-205ENST00000498262 2290 ntTSL 218.47■□□□□ 0.553e-6■■■■□ 21.3
DDX55Q8NHQ9 COX20-202ENST00000391839 1005 ntTSL 1 (best)18.36■□□□□ 0.533e-6■■■■□ 21.3
DDX55Q8NHQ9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.533e-6■■■■□ 21.3
DDX55Q8NHQ9 HSPA9-204ENST00000504902 887 ntTSL 518.36■□□□□ 0.533e-6■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.533e-6■■■■□ 21.3
DDX55Q8NHQ9 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.29■□□□□ 0.523e-6■■■■□ 21.3
DDX55Q8NHQ9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.513e-6■■■■□ 21.3
DDX55Q8NHQ9 CMTM3-213ENST00000566756 1950 ntTSL 218.19■□□□□ 0.53e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.493e-6■■■■□ 21.3
DDX55Q8NHQ9 TTC31-203ENST00000414247 833 ntAPPRIS ALT2 TSL 318.02■□□□□ 0.483e-6■■■■□ 21.3
DDX55Q8NHQ9 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.92■□□□□ 0.463e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.459e-10■■■■□ 21.3
DDX55Q8NHQ9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.453e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.443e-6■■■■□ 21.3
DDX55Q8NHQ9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.437e-9■■■■□ 21.3
DDX55Q8NHQ9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.433e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-205ENST00000528236 2294 ntTSL 217.71■□□□□ 0.433e-6■■■■□ 21.3
DDX55Q8NHQ9 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.423e-6■■■■□ 21.3
DDX55Q8NHQ9 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.423e-6■■■■□ 21.3
DDX55Q8NHQ9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.413e-6■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.44■□□□□ 0.381e-6■■■■□ 21.3
DDX55Q8NHQ9 COL9A2-208ENST00000488463 1005 ntTSL 517.4■□□□□ 0.383e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)17.36■□□□□ 0.373e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-232ENST00000495434 224 ntTSL 517.22■□□□□ 0.353e-6■■■■□ 21.3
DDX55Q8NHQ9 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.343e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRT-210ENST00000477529 540 ntTSL 217.16■□□□□ 0.347e-9■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.08■□□□□ 0.333e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.01■□□□□ 0.313e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-224ENST00000464148 636 ntTSL 516.85■□□□□ 0.293e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-205ENST00000587488 514 ntTSL 316.84■□□□□ 0.297e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-212ENST00000572952 1118 ntTSL 216.81■□□□□ 0.283e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL2-206ENST00000485654 428 ntTSL 216.77■□□□□ 0.282e-18■■■■□ 21.3
DDX55Q8NHQ9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.273e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC16.72■□□□□ 0.273e-6■■■■□ 21.3
DDX55Q8NHQ9 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.273e-6■■■■□ 21.3
DDX55Q8NHQ9 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.243e-6■■■■□ 21.3
DDX55Q8NHQ9 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.52■□□□□ 0.243e-6■■■■□ 21.3
DDX55Q8NHQ9 NDUFA2-203ENST00000510680 576 ntTSL 216.47■□□□□ 0.233e-6■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC16.37■□□□□ 0.213e-6■■■■□ 21.3
DDX55Q8NHQ9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.217e-9■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.35■□□□□ 0.213e-6■■■■□ 21.3
DDX55Q8NHQ9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.213e-6■■■■□ 21.3
DDX55Q8NHQ9 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.3■□□□□ 0.23e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.159e-10■■■■□ 21.3
DDX55Q8NHQ9 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.153e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.153e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.157e-9■■■■□ 21.3
DDX55Q8NHQ9 COPS7A-207ENST00000538375 898 ntTSL 315.92■□□□□ 0.143e-6■■■■□ 21.3
DDX55Q8NHQ9 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.115e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)15.69■□□□□ 0.13e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.55■□□□□ 0.083e-6■■■■□ 21.3
DDX55Q8NHQ9 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC15.45■□□□□ 0.063e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.03■□□□□ -03e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-229ENST00000483159 790 ntTSL 515.03■□□□□ -03e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-233ENST00000495899 790 ntTSL 215.03■□□□□ -03e-6■■■■□ 21.3
DDX55Q8NHQ9 TMEM97-204ENST00000582384 1075 ntTSL 314.97□□□□□ -0.013e-6■■■■□ 21.3
DDX55Q8NHQ9 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.023e-6■■■■□ 21.3
DDX55Q8NHQ9 USP10-207ENST00000563048 1315 ntTSL 214.94□□□□□ -0.023e-6■■■■□ 21.3
DDX55Q8NHQ9 TRAF4-208ENST00000469529 788 ntTSL 214.8□□□□□ -0.043e-6■■■■□ 21.3
DDX55Q8NHQ9 TADA3-205ENST00000492103 1868 ntTSL 214.77□□□□□ -0.057e-9■■■■□ 21.3
DDX55Q8NHQ9 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.053e-6■■■■□ 21.3
DDX55Q8NHQ9 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.052e-25■■■■□ 21.3
DDX55Q8NHQ9 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.062e-7■■■■□ 21.3
DDX55Q8NHQ9 HSPA9-207ENST00000507097 1796 ntTSL 214.66□□□□□ -0.063e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-216ENST00000564136 3071 ntTSL 214.57□□□□□ -0.083e-6■■■■□ 21.3
DDX55Q8NHQ9 PCGF2-205ENST00000618506 1196 ntTSL 5 BASIC14.57□□□□□ -0.083e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.51□□□□□ -0.093e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-209ENST00000531847 501 ntTSL 214.39□□□□□ -0.113e-6■■■■□ 21.3
DDX55Q8NHQ9 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.24□□□□□ -0.133e-6■■■■□ 21.3
DDX55Q8NHQ9 NAXE-204ENST00000467374 779 ntTSL 214.23□□□□□ -0.133e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC14.21□□□□□ -0.133e-6■■■■□ 21.3
DDX55Q8NHQ9 PRR3-206ENST00000498336 2005 ntTSL 314.2□□□□□ -0.143e-6■■■■□ 21.3
DDX55Q8NHQ9 ARHGEF11-203ENST00000461678 536 ntTSL 314.13□□□□□ -0.153e-6■■■■□ 21.3
DDX55Q8NHQ9 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.153e-6■■■■□ 21.3
DDX55Q8NHQ9 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.163e-6■■■■□ 21.3
DDX55Q8NHQ9 NDUFA2-204ENST00000512088 627 ntTSL 2 BASIC13.99□□□□□ -0.174e-13■■■■□ 21.3
DDX55Q8NHQ9 SND1-215ENST00000492772 549 ntTSL 413.93□□□□□ -0.183e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-221ENST00000430433 864 ntTSL 5 BASIC13.88□□□□□ -0.193e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-203ENST00000336520 744 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.193e-6■■■■□ 21.3
DDX55Q8NHQ9 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.23e-6■■■■□ 21.3
DDX55Q8NHQ9 ST5-207ENST00000526099 2404 ntTSL 2 BASIC13.74□□□□□ -0.213e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.257e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.257e-9■■■■□ 21.3
DDX55Q8NHQ9 ST5-201ENST00000313726 4507 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.253e-6■■■■□ 21.3
DDX55Q8NHQ9 CEP85-205ENST00000469609 2384 ntTSL 1 (best)13.4□□□□□ -0.263e-6■■■■□ 21.3
Retrieved 100 of 15,504 protein–RNA pairs in 129.7 ms