RNA–Protein interactions for RNA: ENST00000336300.9

MRPL55-202, Transcript of mitochondrial ribosomal protein L55, humanhuman

APPRIS P1 TSL 2 BASIC

Gene MRPL55, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-202ENST00000336300 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
MRPL55-202ENST00000336300 CCDC180Q9P1Z9 1646 aa33.63■■■□□ 2.97
MRPL55-202ENST00000336300 ABCC9O60706 1549 aa32.88■■■□□ 2.85
MRPL55-202ENST00000336300 DCAF8L2P0C7V8 631 aa31.84■■■□□ 2.69
MRPL55-202ENST00000336300 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
MRPL55-202ENST00000336300 NACADO15069 1562 aa31.67■■■□□ 2.66
MRPL55-202ENST00000336300 ZCCHC6Q5VYS8 1495 aaKnown RBP31.58■■■□□ 2.65
MRPL55-202ENST00000336300 MYO15BQ96JP2 1530 aa31.49■■■□□ 2.63
MRPL55-202ENST00000336300 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.61
MRPL55-202ENST00000336300 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
MRPL55-202ENST00000336300 PABPN1Q86U42 306 aaKnown RBP eCLIP30.8■■■□□ 2.52
MRPL55-202ENST00000336300 SCRIBQ14160 1630 aa30.71■■■□□ 2.51
MRPL55-202ENST00000336300 BICRAQ9NZM4 1560 aa30.61■■■□□ 2.49
MRPL55-202ENST00000336300 SHROOM4Q9ULL8 1493 aa30.41■■■□□ 2.46
MRPL55-202ENST00000336300 DNAJC5BQ9UF47 199 aa30.07■■■□□ 2.4
MRPL55-202ENST00000336300 EIF4G1Q04637 1599 aaKnown RBP29.86■■■□□ 2.37
MRPL55-202ENST00000336300 CC2D2AQ9P2K1 1620 aa29.71■■■□□ 2.35
MRPL55-202ENST00000336300 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
MRPL55-202ENST00000336300 BAZ1AQ9NRL2 1556 aaPredicted RBP29.41■■■□□ 2.3
MRPL55-202ENST00000336300 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
MRPL55-202ENST00000336300 ATAD2BQ9ULI0 1458 aa29.23■■■□□ 2.27
MRPL55-202ENST00000336300 SMARCA2P51531 1590 aa29.23■■■□□ 2.27
MRPL55-202ENST00000336300 NCAPD3P42695 1498 aa29.23■■■□□ 2.27
MRPL55-202ENST00000336300 MROH2BQ7Z745 1585 aa29.19■■■□□ 2.26
MRPL55-202ENST00000336300 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
MRPL55-202ENST00000336300 HMGXB3Q12766 1538 aa29.05■■■□□ 2.24
MRPL55-202ENST00000336300 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
MRPL55-202ENST00000336300 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
MRPL55-202ENST00000336300 WIZO95785 1651 aa28.87■■■□□ 2.21
MRPL55-202ENST00000336300 TOP2AP11388 1531 aaKnown RBP28.6■■■□□ 2.17
MRPL55-202ENST00000336300 NESP48681 1621 aa28.43■■■□□ 2.14
MRPL55-202ENST00000336300 LAMC3Q9Y6N6 1575 aa28.43■■■□□ 2.14
MRPL55-202ENST00000336300 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
MRPL55-202ENST00000336300 CADPSQ9ULU8 1353 aa28.41■■■□□ 2.14
MRPL55-202ENST00000336300 SUPT5HO00267 1087 aaKnown RBP28.39■■■□□ 2.14
MRPL55-202ENST00000336300 PDS5BQ9NTI5 1447 aa28.32■■■□□ 2.12
MRPL55-202ENST00000336300 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
MRPL55-202ENST00000336300 CFTRP13569 1480 aa28.22■■■□□ 2.11
MRPL55-202ENST00000336300 KIF21AQ7Z4S6 1674 aa28.07■■■□□ 2.08
MRPL55-202ENST00000336300 FANCD2Q9BXW9 1451 aa28.06■■■□□ 2.08
MRPL55-202ENST00000336300 CUX2O14529 1486 aa28.03■■■□□ 2.08
MRPL55-202ENST00000336300 CEP164Q9UPV0 1460 aa28.02■■■□□ 2.08
MRPL55-202ENST00000336300 MRC2Q9UBG0 1479 aa27.95■■■□□ 2.06
MRPL55-202ENST00000336300 THOC2Q8NI27 1593 aaKnown RBP27.94■■■□□ 2.06
MRPL55-202ENST00000336300 PRDM2Q13029 1718 aa27.92■■■□□ 2.06
MRPL55-202ENST00000336300 WDR62O43379 1518 aa27.81■■■□□ 2.04
MRPL55-202ENST00000336300 URB2Q14146 1524 aaKnown RBP27.71■■■□□ 2.03
MRPL55-202ENST00000336300 ABCC8Q09428 1581 aa27.69■■■□□ 2.02
MRPL55-202ENST00000336300 TOPBP1Q92547 1522 aa27.59■■■□□ 2.01
MRPL55-202ENST00000336300 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
MRPL55-202ENST00000336300 IFT140Q96RY7 1462 aa27.44■■□□□ 1.98
MRPL55-202ENST00000336300 CUX1P39880 1505 aa27.38■■□□□ 1.97
MRPL55-202ENST00000336300 POLA1P09884 1462 aaPredicted RBP27.36■■□□□ 1.97
MRPL55-202ENST00000336300 SOGA1O94964 1423 aa27.33■■□□□ 1.96
MRPL55-202ENST00000336300 WRNQ14191 1432 aaPredicted RBP eCLIP27.32■■□□□ 1.96
MRPL55-202ENST00000336300 FGD5Q6ZNL6 1462 aa27.32■■□□□ 1.96
MRPL55-202ENST00000336300 RAD54L2Q9Y4B4 1467 aa27.25■■□□□ 1.95
MRPL55-202ENST00000336300 ZNF608Q9ULD9 1512 aaPredicted RBP27.24■■□□□ 1.95
MRPL55-202ENST00000336300 TARBP1Q13395 1621 aaKnown RBP27.23■■□□□ 1.95
MRPL55-202ENST00000336300 TOP2BQ02880 1626 aa27.19■■□□□ 1.94
MRPL55-202ENST00000336300 BIVM-ERCC5R4GMW8 1640 aa27.16■■□□□ 1.94
MRPL55-202ENST00000336300 SYNJ1O43426 1573 aa27.15■■□□□ 1.94
MRPL55-202ENST00000336300 AQRO60306 1485 aaKnown RBP eCLIP27.15■■□□□ 1.948e-7■■■■■ 27.9
MRPL55-202ENST00000336300 TDRD9Q8NDG6 1382 aaKnown RBP27.13■■□□□ 1.93
MRPL55-202ENST00000336300 EIF4G3O43432 1585 aaKnown RBP27.12■■□□□ 1.93
MRPL55-202ENST00000336300 DNAJC5Q9H3Z4 198 aa27.11■■□□□ 1.93
MRPL55-202ENST00000336300 WDR97A6NE52 1622 aa27.08■■□□□ 1.93
MRPL55-202ENST00000336300 ABCA10Q8WWZ4 1543 aa27.06■■□□□ 1.92
MRPL55-202ENST00000336300 OSCARQ8IYS5 282 aa26.99■■□□□ 1.91
MRPL55-202ENST00000336300 GAPVD1Q14C86 1478 aa26.99■■□□□ 1.91
MRPL55-202ENST00000336300 GRIN2BQ13224 1484 aa26.97■■□□□ 1.91
MRPL55-202ENST00000336300 FBLN2P98095 1184 aa26.93■■□□□ 1.9
MRPL55-202ENST00000336300 SNAPC4Q5SXM2 1469 aa26.88■■□□□ 1.89
MRPL55-202ENST00000336300 ABCA5Q8WWZ7 1642 aa26.88■■□□□ 1.89
MRPL55-202ENST00000336300 MAGI1Q96QZ7 1491 aaPredicted RBP26.87■■□□□ 1.89
MRPL55-202ENST00000336300 CHMP7Q8WUX9 453 aaPredicted RBP26.87■■□□□ 1.89
MRPL55-202ENST00000336300 TRIM41Q8WV44 630 aa26.85■■□□□ 1.89
MRPL55-202ENST00000336300 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
MRPL55-202ENST00000336300 KIF27Q86VH2 1401 aa26.79■■□□□ 1.88
MRPL55-202ENST00000336300 SYNJ2O15056 1496 aa26.77■■□□□ 1.88
MRPL55-202ENST00000336300 ERICH3Q5RHP9 1530 aa26.75■■□□□ 1.87
MRPL55-202ENST00000336300 CHD1O14646 1710 aa26.74■■□□□ 1.87
MRPL55-202ENST00000336300 FHAD1B1AJZ9 1412 aa26.69■■□□□ 1.86
MRPL55-202ENST00000336300 IGF1RP08069 1367 aa26.63■■□□□ 1.85
MRPL55-202ENST00000336300 ADAMTS12P58397 1594 aa26.63■■□□□ 1.85
MRPL55-202ENST00000336300 GRIN2AQ12879 1464 aa26.59■■□□□ 1.85
MRPL55-202ENST00000336300 CUL7Q14999 1698 aa26.5■■□□□ 1.83
MRPL55-202ENST00000336300 CARMIL1Q5VZK9 1371 aa26.5■■□□□ 1.83
MRPL55-202ENST00000336300 CHIC1Q5VXU3 224 aa26.5■■□□□ 1.83
MRPL55-202ENST00000336300 CLASP1Q7Z460 1538 aa26.47■■□□□ 1.83
MRPL55-202ENST00000336300 NUP160Q12769 1436 aa26.46■■□□□ 1.83
MRPL55-202ENST00000336300 RUSC2Q8N2Y8 1516 aa26.45■■□□□ 1.83
MRPL55-202ENST00000336300 ARHGEF11O15085 1522 aa26.41■■□□□ 1.82
MRPL55-202ENST00000336300 CEP170Q5SW79 1584 aa26.4■■□□□ 1.82
MRPL55-202ENST00000336300 RIMBP3CA6NJZ7 1639 aa26.38■■□□□ 1.81
MRPL55-202ENST00000336300 RIMBP3BA6NNM3 1639 aa26.38■■□□□ 1.81
MRPL55-202ENST00000336300 RIMBP3Q9UFD9 1639 aa26.38■■□□□ 1.81
MRPL55-202ENST00000336300 RAPGEF2Q9Y4G8 1499 aa26.34■■□□□ 1.81
MRPL55-202ENST00000336300 EEA1Q15075 1411 aa26.33■■□□□ 1.81
MRPL55-202ENST00000336300 CSRNP3Q8WYN3 585 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms