RNA–Protein interactions for RNA: ENST00000223641.4

SEC61B-201, Transcript of Sec61 translocon beta subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC61B, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61B-201ENST00000223641 NISCHQ9Y2I1 1504 aa33.16■■■□□ 2.9
SEC61B-201ENST00000223641 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
SEC61B-201ENST00000223641 ABCC9O60706 1549 aa27.95■■■□□ 2.06
SEC61B-201ENST00000223641 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
SEC61B-201ENST00000223641 DCAF1Q9Y4B6 1507 aa27.51■■□□□ 1.99
SEC61B-201ENST00000223641 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
SEC61B-201ENST00000223641 NACADO15069 1562 aa27.32■■□□□ 1.96
SEC61B-201ENST00000223641 DCAF8L2P0C7V8 631 aa27.32■■□□□ 1.96
SEC61B-201ENST00000223641 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
SEC61B-201ENST00000223641 SCRIBQ14160 1630 aa26.65■■□□□ 1.86
SEC61B-201ENST00000223641 UNC13AQ9UPW8 1703 aa26.64■■□□□ 1.85
SEC61B-201ENST00000223641 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
SEC61B-201ENST00000223641 BICRAQ9NZM4 1560 aa26.4■■□□□ 1.82
SEC61B-201ENST00000223641 PABPN1Q86U42 306 aaKnown RBP eCLIP26.2■■□□□ 1.78
SEC61B-201ENST00000223641 CECR2Q9BXF3 1484 aa25.75■■□□□ 1.71
SEC61B-201ENST00000223641 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
SEC61B-201ENST00000223641 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
SEC61B-201ENST00000223641 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
SEC61B-201ENST00000223641 MROH2BQ7Z745 1585 aa25.56■■□□□ 1.68
SEC61B-201ENST00000223641 RSF1Q96T23 1441 aaPredicted RBP25.48■■□□□ 1.67
SEC61B-201ENST00000223641 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.65
SEC61B-201ENST00000223641 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
SEC61B-201ENST00000223641 WIZO95785 1651 aa25.31■■□□□ 1.64
SEC61B-201ENST00000223641 ATAD2BQ9ULI0 1458 aa25.3■■□□□ 1.64
SEC61B-201ENST00000223641 SMARCA2P51531 1590 aa25.29■■□□□ 1.64
SEC61B-201ENST00000223641 NCAPD3P42695 1498 aa25.22■■□□□ 1.63
SEC61B-201ENST00000223641 SUPT5HO00267 1087 aaKnown RBP25.18■■□□□ 1.62
SEC61B-201ENST00000223641 DNAJC5BQ9UF47 199 aa25.16■■□□□ 1.62
SEC61B-201ENST00000223641 HMGXB3Q12766 1538 aa25.14■■□□□ 1.62
SEC61B-201ENST00000223641 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
SEC61B-201ENST00000223641 TOP2AP11388 1531 aaKnown RBP25.07■■□□□ 1.6
SEC61B-201ENST00000223641 CCDC88BA6NC98 1476 aa24.78■■□□□ 1.56
SEC61B-201ENST00000223641 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
SEC61B-201ENST00000223641 CFTRP13569 1480 aa24.49■■□□□ 1.51
SEC61B-201ENST00000223641 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
SEC61B-201ENST00000223641 NESP48681 1621 aa24.39■■□□□ 1.49
SEC61B-201ENST00000223641 PRDM2Q13029 1718 aa24.38■■□□□ 1.49
SEC61B-201ENST00000223641 PDS5BQ9NTI5 1447 aa24.23■■□□□ 1.47
SEC61B-201ENST00000223641 FANCD2Q9BXW9 1451 aa24.19■■□□□ 1.46
SEC61B-201ENST00000223641 KIF21AQ7Z4S6 1674 aa24.14■■□□□ 1.45
SEC61B-201ENST00000223641 CEP164Q9UPV0 1460 aa24.09■■□□□ 1.45
SEC61B-201ENST00000223641 ABCC8Q09428 1581 aa24.03■■□□□ 1.44
SEC61B-201ENST00000223641 ERCC6Q03468 1493 aa24■■□□□ 1.43
SEC61B-201ENST00000223641 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
SEC61B-201ENST00000223641 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
SEC61B-201ENST00000223641 CUX1P39880 1505 aa23.94■■□□□ 1.42
SEC61B-201ENST00000223641 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
SEC61B-201ENST00000223641 URB2Q14146 1524 aaKnown RBP23.93■■□□□ 1.42
SEC61B-201ENST00000223641 THOC2Q8NI27 1593 aaKnown RBP23.92■■□□□ 1.42
SEC61B-201ENST00000223641 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
SEC61B-201ENST00000223641 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
SEC61B-201ENST00000223641 BIVM-ERCC5R4GMW8 1640 aa23.91■■□□□ 1.42
SEC61B-201ENST00000223641 TOP2BQ02880 1626 aa23.9■■□□□ 1.42
SEC61B-201ENST00000223641 TOPBP1Q92547 1522 aa23.89■■□□□ 1.41
SEC61B-201ENST00000223641 WDR62O43379 1518 aa23.88■■□□□ 1.41
SEC61B-201ENST00000223641 TRIM41Q8WV44 630 aa23.79■■□□□ 1.4
SEC61B-201ENST00000223641 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
SEC61B-201ENST00000223641 POLA1P09884 1462 aaPredicted RBP23.73■■□□□ 1.39
SEC61B-201ENST00000223641 CUX2O14529 1486 aa23.66■■□□□ 1.38
SEC61B-201ENST00000223641 SOGA1O94964 1423 aa23.62■■□□□ 1.37
SEC61B-201ENST00000223641 TARBP1Q13395 1621 aaKnown RBP23.61■■□□□ 1.37
SEC61B-201ENST00000223641 RAD54L2Q9Y4B4 1467 aa23.6■■□□□ 1.37
SEC61B-201ENST00000223641 IFT140Q96RY7 1462 aa23.57■■□□□ 1.36
SEC61B-201ENST00000223641 WDR97A6NE52 1622 aa23.57■■□□□ 1.36
SEC61B-201ENST00000223641 ABCA10Q8WWZ4 1543 aa23.56■■□□□ 1.36
SEC61B-201ENST00000223641 ABCA5Q8WWZ7 1642 aa23.43■■□□□ 1.34
SEC61B-201ENST00000223641 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
SEC61B-201ENST00000223641 KIF27Q86VH2 1401 aa23.42■■□□□ 1.34
SEC61B-201ENST00000223641 ZNF608Q9ULD9 1512 aaPredicted RBP23.42■■□□□ 1.34
SEC61B-201ENST00000223641 EEA1Q15075 1411 aa23.4■■□□□ 1.34
SEC61B-201ENST00000223641 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
SEC61B-201ENST00000223641 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
SEC61B-201ENST00000223641 EIF4G3O43432 1585 aaKnown RBP23.36■■□□□ 1.33
SEC61B-201ENST00000223641 AQRO60306 1485 aaKnown RBP eCLIP23.36■■□□□ 1.332e-6■■■□□ 18.3
SEC61B-201ENST00000223641 IGF1RP08069 1367 aa23.29■■□□□ 1.32
SEC61B-201ENST00000223641 ERICH3Q5RHP9 1530 aa23.29■■□□□ 1.32
SEC61B-201ENST00000223641 PBRM1Q86U86 1689 aa23.29■■□□□ 1.32
SEC61B-201ENST00000223641 GRIN2BQ13224 1484 aa23.28■■□□□ 1.32
SEC61B-201ENST00000223641 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
SEC61B-201ENST00000223641 FAM9AQ8IZU1 332 aaPredicted RBP23.24■■□□□ 1.31
SEC61B-201ENST00000223641 CUL7Q14999 1698 aa23.19■■□□□ 1.3
SEC61B-201ENST00000223641 PRXQ9BXM0 1461 aa23.17■■□□□ 1.3
SEC61B-201ENST00000223641 MAGI1Q96QZ7 1491 aaPredicted RBP23.17■■□□□ 1.3
SEC61B-201ENST00000223641 SNAPC4Q5SXM2 1469 aa23.15■■□□□ 1.3
SEC61B-201ENST00000223641 CARMIL1Q5VZK9 1371 aa23.14■■□□□ 1.3
SEC61B-201ENST00000223641 ADAMTS12P58397 1594 aa23.14■■□□□ 1.29
SEC61B-201ENST00000223641 KIF21BO75037 1637 aa23.12■■□□□ 1.29
SEC61B-201ENST00000223641 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
SEC61B-201ENST00000223641 RAPGEF2Q9Y4G8 1499 aa23.07■■□□□ 1.28
SEC61B-201ENST00000223641 SYNJ2O15056 1496 aa23.06■■□□□ 1.28
SEC61B-201ENST00000223641 GOLGA3Q08378 1498 aa22.99■■□□□ 1.27
SEC61B-201ENST00000223641 GRIN2AQ12879 1464 aa22.98■■□□□ 1.27
SEC61B-201ENST00000223641 CHD1O14646 1710 aa22.96■■□□□ 1.27
SEC61B-201ENST00000223641 CHMP7Q8WUX9 453 aaPredicted RBP22.95■■□□□ 1.26
SEC61B-201ENST00000223641 LOC105371045A0A1W2PR82 267 aa22.92■■□□□ 1.26
SEC61B-201ENST00000223641 FBLN2P98095 1184 aa22.88■■□□□ 1.25
SEC61B-201ENST00000223641 NUP160Q12769 1436 aa22.88■■□□□ 1.25
SEC61B-201ENST00000223641 CEP170Q5SW79 1584 aa22.85■■□□□ 1.25
SEC61B-201ENST00000223641 CTTNBP2Q8WZ74 1663 aa22.84■■□□□ 1.25
SEC61B-201ENST00000223641 TNIKQ9UKE5 1360 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms