RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-233ENST00000495899 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.4
MRPL55-233ENST00000495899 AEBP2Q6ZN18 517 aaPredicted RBP29.28■■■□□ 2.28
MRPL55-233ENST00000495899 CHIC1Q5VXU3 224 aa28.92■■■□□ 2.22
MRPL55-233ENST00000495899 CCDC180Q9P1Z9 1646 aa26.65■■□□□ 1.86
MRPL55-233ENST00000495899 ABCC9O60706 1549 aa26.14■■□□□ 1.78
MRPL55-233ENST00000495899 PHF23Q9BUL5 403 aaPredicted RBP25.44■■□□□ 1.66
MRPL55-233ENST00000495899 RB1CC1Q8TDY2 1594 aa25.15■■□□□ 1.62
MRPL55-233ENST00000495899 NACADO15069 1562 aa25.14■■□□□ 1.61
MRPL55-233ENST00000495899 DCAF8L2P0C7V8 631 aa25.13■■□□□ 1.61
MRPL55-233ENST00000495899 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
MRPL55-233ENST00000495899 ZCCHC6Q5VYS8 1495 aaKnown RBP24.97■■□□□ 1.59
MRPL55-233ENST00000495899 DCAF1Q9Y4B6 1507 aa24.87■■□□□ 1.57
MRPL55-233ENST00000495899 SENP3Q9H4L4 574 aaPredicted RBP24.85■■□□□ 1.57
MRPL55-233ENST00000495899 PABPN1Q86U42 306 aaKnown RBP eCLIP24.47■■□□□ 1.51
MRPL55-233ENST00000495899 UNC13AQ9UPW8 1703 aa24.43■■□□□ 1.5
MRPL55-233ENST00000495899 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
MRPL55-233ENST00000495899 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
MRPL55-233ENST00000495899 SHROOM4Q9ULL8 1493 aa24.19■■□□□ 1.46
MRPL55-233ENST00000495899 DNAJC5BQ9UF47 199 aa24.09■■□□□ 1.45
MRPL55-233ENST00000495899 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
MRPL55-233ENST00000495899 PLPPR3Q6T4P5 718 aa23.63■■□□□ 1.37
MRPL55-233ENST00000495899 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
MRPL55-233ENST00000495899 CECR2Q9BXF3 1484 aa23.53■■□□□ 1.36
MRPL55-233ENST00000495899 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
MRPL55-233ENST00000495899 SMARCA4P51532 1647 aa23.25■■□□□ 1.31
MRPL55-233ENST00000495899 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
MRPL55-233ENST00000495899 ATAD2BQ9ULI0 1458 aa23.2■■□□□ 1.3
MRPL55-233ENST00000495899 SMARCA2P51531 1590 aa23.16■■□□□ 1.3
MRPL55-233ENST00000495899 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
MRPL55-233ENST00000495899 PEG3Q9GZU2 1588 aa23.08■■□□□ 1.29
MRPL55-233ENST00000495899 HMGXB3Q12766 1538 aa23.06■■□□□ 1.28
MRPL55-233ENST00000495899 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
MRPL55-233ENST00000495899 FOXD1Q16676 465 aa22.99■■□□□ 1.27
MRPL55-233ENST00000495899 RSF1Q96T23 1441 aaPredicted RBP22.87■■□□□ 1.25
MRPL55-233ENST00000495899 WIZO95785 1651 aa22.8■■□□□ 1.24
MRPL55-233ENST00000495899 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
MRPL55-233ENST00000495899 NESP48681 1621 aa22.6■■□□□ 1.21
MRPL55-233ENST00000495899 LAMC3Q9Y6N6 1575 aa22.57■■□□□ 1.2
MRPL55-233ENST00000495899 ERCC6Q03468 1493 aa22.56■■□□□ 1.2
MRPL55-233ENST00000495899 CADPSQ9ULU8 1353 aa22.55■■□□□ 1.2
MRPL55-233ENST00000495899 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
MRPL55-233ENST00000495899 CFTRP13569 1480 aa22.39■■□□□ 1.17
MRPL55-233ENST00000495899 CCDC88BA6NC98 1476 aa22.37■■□□□ 1.17
MRPL55-233ENST00000495899 CUX2O14529 1486 aa22.37■■□□□ 1.17
MRPL55-233ENST00000495899 ADRA2BP18089 450 aa22.35■■□□□ 1.17
MRPL55-233ENST00000495899 PPP6R1Q9UPN7 881 aa22.35■■□□□ 1.17
MRPL55-233ENST00000495899 FANCD2Q9BXW9 1451 aa22.25■■□□□ 1.15
MRPL55-233ENST00000495899 KIF21AQ7Z4S6 1674 aa22.25■■□□□ 1.15
MRPL55-233ENST00000495899 SUPT5HO00267 1087 aaKnown RBP22.24■■□□□ 1.15
MRPL55-233ENST00000495899 THOC2Q8NI27 1593 aaKnown RBP22.23■■□□□ 1.15
MRPL55-233ENST00000495899 CEP164Q9UPV0 1460 aa22.22■■□□□ 1.15
MRPL55-233ENST00000495899 MRC2Q9UBG0 1479 aa22.2■■□□□ 1.14
MRPL55-233ENST00000495899 WDR62O43379 1518 aa22.11■■□□□ 1.13
MRPL55-233ENST00000495899 PRDM2Q13029 1718 aa22.05■■□□□ 1.12
MRPL55-233ENST00000495899 URB2Q14146 1524 aaKnown RBP22.01■■□□□ 1.11
MRPL55-233ENST00000495899 ABCC8Q09428 1581 aa21.94■■□□□ 1.1
MRPL55-233ENST00000495899 TOPBP1Q92547 1522 aa21.87■■□□□ 1.09
MRPL55-233ENST00000495899 DNMBPQ6XZF7 1577 aa21.83■■□□□ 1.09
MRPL55-233ENST00000495899 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
MRPL55-233ENST00000495899 IFT140Q96RY7 1462 aa21.78■■□□□ 1.08
MRPL55-233ENST00000495899 PIAS4Q8N2W9 510 aaPredicted RBP21.77■■□□□ 1.08
MRPL55-233ENST00000495899 POLA1P09884 1462 aaPredicted RBP21.68■■□□□ 1.06
MRPL55-233ENST00000495899 CUX1P39880 1505 aa21.67■■□□□ 1.06
MRPL55-233ENST00000495899 SOGA1O94964 1423 aa21.64■■□□□ 1.06
MRPL55-233ENST00000495899 ZNF608Q9ULD9 1512 aaPredicted RBP21.64■■□□□ 1.05
MRPL55-233ENST00000495899 FGD5Q6ZNL6 1462 aa21.62■■□□□ 1.05
MRPL55-233ENST00000495899 TARBP1Q13395 1621 aaKnown RBP21.62■■□□□ 1.05
MRPL55-233ENST00000495899 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.05
MRPL55-233ENST00000495899 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.04
MRPL55-233ENST00000495899 AQRO60306 1485 aaKnown RBP eCLIP21.54■■□□□ 1.04
MRPL55-233ENST00000495899 TDRD9Q8NDG6 1382 aaKnown RBP21.51■■□□□ 1.03
MRPL55-233ENST00000495899 EIF4G3O43432 1585 aaKnown RBP21.51■■□□□ 1.03
MRPL55-233ENST00000495899 OSCARQ8IYS5 282 aa21.5■■□□□ 1.03
MRPL55-233ENST00000495899 WDR97A6NE52 1622 aa21.48■■□□□ 1.03
MRPL55-233ENST00000495899 TOP2BQ02880 1626 aa21.47■■□□□ 1.03
MRPL55-233ENST00000495899 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
MRPL55-233ENST00000495899 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
MRPL55-233ENST00000495899 SYNJ1O43426 1573 aa21.44■■□□□ 1.02
MRPL55-233ENST00000495899 GRIN2BQ13224 1484 aa21.38■■□□□ 1.01
MRPL55-233ENST00000495899 GAPVD1Q14C86 1478 aa21.37■■□□□ 1.01
MRPL55-233ENST00000495899 MAGI1Q96QZ7 1491 aaPredicted RBP21.32■■□□□ 1
MRPL55-233ENST00000495899 FBLN2P98095 1184 aa21.31■■□□□ 1
MRPL55-233ENST00000495899 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
MRPL55-233ENST00000495899 ABCA5Q8WWZ7 1642 aa21.29■■□□□ 1
MRPL55-233ENST00000495899 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
MRPL55-233ENST00000495899 SYNJ2O15056 1496 aa21.25■□□□□ 0.99
MRPL55-233ENST00000495899 PBRM1Q86U86 1689 aa21.2■□□□□ 0.98
MRPL55-233ENST00000495899 CHD1O14646 1710 aa21.2■□□□□ 0.98
MRPL55-233ENST00000495899 ERICH3Q5RHP9 1530 aa21.18■□□□□ 0.98
MRPL55-233ENST00000495899 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
MRPL55-233ENST00000495899 KIF27Q86VH2 1401 aa21.13■□□□□ 0.97
MRPL55-233ENST00000495899 MSH5O43196 834 aa21.12■□□□□ 0.97
MRPL55-233ENST00000495899 ADAMTS12P58397 1594 aa21.09■□□□□ 0.97
MRPL55-233ENST00000495899 GRIN2AQ12879 1464 aa21.08■□□□□ 0.97
MRPL55-233ENST00000495899 IGF1RP08069 1367 aa21.08■□□□□ 0.96
MRPL55-233ENST00000495899 CLASP1Q7Z460 1538 aa21.06■□□□□ 0.96
MRPL55-233ENST00000495899 TRIM41Q8WV44 630 aa21.06■□□□□ 0.96
MRPL55-233ENST00000495899 ARHGEF11O15085 1522 aa21.04■□□□□ 0.96
MRPL55-233ENST00000495899 RIMBP3CA6NJZ7 1639 aa21.01■□□□□ 0.95
MRPL55-233ENST00000495899 RIMBP3BA6NNM3 1639 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms