RNA–Protein interactions for RNA: ENST00000492772.1

SND1-215, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 4

Gene SND1, Length 549 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-215ENST00000492772 NISCHQ9Y2I1 1504 aa28.02■■■□□ 2.08
SND1-215ENST00000492772 ABCC9O60706 1549 aa25.4■■□□□ 1.66
SND1-215ENST00000492772 CCDC180Q9P1Z9 1646 aa25.34■■□□□ 1.65
SND1-215ENST00000492772 RB1CC1Q8TDY2 1594 aa24.17■■□□□ 1.46
SND1-215ENST00000492772 NACADO15069 1562 aa23.95■■□□□ 1.42
SND1-215ENST00000492772 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
SND1-215ENST00000492772 UNC13AQ9UPW8 1703 aa23.63■■□□□ 1.37
SND1-215ENST00000492772 DCAF8L2P0C7V8 631 aa23.59■■□□□ 1.37
SND1-215ENST00000492772 MYO15BQ96JP2 1530 aa23.57■■□□□ 1.36
SND1-215ENST00000492772 PABPN1Q86U42 306 aaKnown RBP eCLIP23.53■■□□□ 1.36
SND1-215ENST00000492772 BICRAQ9NZM4 1560 aa23.44■■□□□ 1.34
SND1-215ENST00000492772 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
SND1-215ENST00000492772 SHROOM4Q9ULL8 1493 aa23.2■■□□□ 1.3
SND1-215ENST00000492772 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
SND1-215ENST00000492772 SCRIBQ14160 1630 aa22.99■■□□□ 1.27
SND1-215ENST00000492772 CC2D2AQ9P2K1 1620 aa22.98■■□□□ 1.27
SND1-215ENST00000492772 CECR2Q9BXF3 1484 aa22.92■■□□□ 1.26
SND1-215ENST00000492772 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.26
SND1-215ENST00000492772 DNAJC5Q9H3Z4 198 aa22.17■■□□□ 1.14
SND1-215ENST00000492772 NCAPD3P42695 1498 aa22.07■■□□□ 1.12
SND1-215ENST00000492772 CUX2O14529 1486 aa22.06■■□□□ 1.12
SND1-215ENST00000492772 ERCC6Q03468 1493 aa21.98■■□□□ 1.11
SND1-215ENST00000492772 ATAD2BQ9ULI0 1458 aa21.96■■□□□ 1.11
SND1-215ENST00000492772 HMGXB3Q12766 1538 aa21.95■■□□□ 1.1
SND1-215ENST00000492772 SMARCA2P51531 1590 aa21.95■■□□□ 1.1
SND1-215ENST00000492772 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
SND1-215ENST00000492772 BAZ1AQ9NRL2 1556 aaPredicted RBP21.8■■□□□ 1.08
SND1-215ENST00000492772 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.07
SND1-215ENST00000492772 NESP48681 1621 aa21.75■■□□□ 1.07
SND1-215ENST00000492772 PEG3Q9GZU2 1588 aa21.74■■□□□ 1.07
SND1-215ENST00000492772 THOC2Q8NI27 1593 aaKnown RBP21.66■■□□□ 1.06
SND1-215ENST00000492772 LAMC3Q9Y6N6 1575 aa21.65■■□□□ 1.06
SND1-215ENST00000492772 MROH2BQ7Z745 1585 aa21.56■■□□□ 1.04
SND1-215ENST00000492772 KIF21AQ7Z4S6 1674 aa21.54■■□□□ 1.04
SND1-215ENST00000492772 PDS5BQ9NTI5 1447 aa21.5■■□□□ 1.03
SND1-215ENST00000492772 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
SND1-215ENST00000492772 MRC2Q9UBG0 1479 aa21.34■■□□□ 1.01
SND1-215ENST00000492772 WDR62O43379 1518 aa21.32■■□□□ 1
SND1-215ENST00000492772 WIZO95785 1651 aa21.31■■□□□ 1
SND1-215ENST00000492772 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
SND1-215ENST00000492772 FANCD2Q9BXW9 1451 aa21.14■□□□□ 0.98
SND1-215ENST00000492772 CFTRP13569 1480 aa21.1■□□□□ 0.97
SND1-215ENST00000492772 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
SND1-215ENST00000492772 TOP2AP11388 1531 aaKnown RBP21.07■□□□□ 0.96
SND1-215ENST00000492772 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
SND1-215ENST00000492772 PRDM2Q13029 1718 aa20.98■□□□□ 0.95
SND1-215ENST00000492772 URB2Q14146 1524 aaKnown RBP20.98■□□□□ 0.95
SND1-215ENST00000492772 OSCARQ8IYS5 282 aa20.91■□□□□ 0.94
SND1-215ENST00000492772 IFT140Q96RY7 1462 aa20.8■□□□□ 0.92
SND1-215ENST00000492772 CCDC88BA6NC98 1476 aa20.76■□□□□ 0.91
SND1-215ENST00000492772 RIMBP3CA6NJZ7 1639 aa20.75■□□□□ 0.91
SND1-215ENST00000492772 RIMBP3BA6NNM3 1639 aa20.75■□□□□ 0.91
SND1-215ENST00000492772 RIMBP3Q9UFD9 1639 aa20.75■□□□□ 0.91
SND1-215ENST00000492772 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
SND1-215ENST00000492772 ZNF608Q9ULD9 1512 aaPredicted RBP20.73■□□□□ 0.91
SND1-215ENST00000492772 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
SND1-215ENST00000492772 EIF4G3O43432 1585 aaKnown RBP20.68■□□□□ 0.9
SND1-215ENST00000492772 DNMBPQ6XZF7 1577 aa20.67■□□□□ 0.9
SND1-215ENST00000492772 ARHGEF11O15085 1522 aa20.64■□□□□ 0.9
SND1-215ENST00000492772 TARBP1Q13395 1621 aaKnown RBP20.58■□□□□ 0.89
SND1-215ENST00000492772 CHD1O14646 1710 aa20.57■□□□□ 0.88
SND1-215ENST00000492772 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.874e-8■■■■□ 24.1
SND1-215ENST00000492772 POLA1P09884 1462 aaPredicted RBP20.5■□□□□ 0.87
SND1-215ENST00000492772 WDR97A6NE52 1622 aa20.44■□□□□ 0.86
SND1-215ENST00000492772 ARAP1Q96P48 1450 aa20.42■□□□□ 0.86
SND1-215ENST00000492772 CYB5RLQ6IPT4 315 aa20.4■□□□□ 0.86
SND1-215ENST00000492772 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
SND1-215ENST00000492772 FBLN2P98095 1184 aa20.37■□□□□ 0.85
SND1-215ENST00000492772 SOGA1O94964 1423 aa20.36■□□□□ 0.85
SND1-215ENST00000492772 FGD5Q6ZNL6 1462 aa20.34■□□□□ 0.85
SND1-215ENST00000492772 SNAPC4Q5SXM2 1469 aa20.33■□□□□ 0.85
SND1-215ENST00000492772 TDRD9Q8NDG6 1382 aaKnown RBP20.33■□□□□ 0.84
SND1-215ENST00000492772 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
SND1-215ENST00000492772 MAGI1Q96QZ7 1491 aaPredicted RBP20.3■□□□□ 0.84
SND1-215ENST00000492772 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
SND1-215ENST00000492772 CUX1P39880 1505 aa20.28■□□□□ 0.84
SND1-215ENST00000492772 GRIN2BQ13224 1484 aa20.26■□□□□ 0.83
SND1-215ENST00000492772 TRHP20396 242 aaPredicted RBP20.26■□□□□ 0.83
SND1-215ENST00000492772 SYNJ2O15056 1496 aa20.23■□□□□ 0.83
SND1-215ENST00000492772 PBRM1Q86U86 1689 aa20.22■□□□□ 0.83
SND1-215ENST00000492772 CHMP7Q8WUX9 453 aaPredicted RBP20.21■□□□□ 0.83
SND1-215ENST00000492772 ABCA5Q8WWZ7 1642 aa20.14■□□□□ 0.81
SND1-215ENST00000492772 GAPVD1Q14C86 1478 aa20.14■□□□□ 0.81
SND1-215ENST00000492772 ABCA10Q8WWZ4 1543 aa20.12■□□□□ 0.81
SND1-215ENST00000492772 ADAMTS12P58397 1594 aa20■□□□□ 0.79
SND1-215ENST00000492772 GRIN2AQ12879 1464 aa20■□□□□ 0.79
SND1-215ENST00000492772 WRNQ14191 1432 aaPredicted RBP eCLIP19.97■□□□□ 0.793e-6■□□□□ 9.2
SND1-215ENST00000492772 BIVM-ERCC5R4GMW8 1640 aa19.96■□□□□ 0.79
SND1-215ENST00000492772 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
SND1-215ENST00000492772 CEP170Q5SW79 1584 aa19.94■□□□□ 0.78
SND1-215ENST00000492772 NUP160Q12769 1436 aa19.93■□□□□ 0.78
SND1-215ENST00000492772 ERCC6L2Q5T890 1561 aa19.93■□□□□ 0.78
SND1-215ENST00000492772 SHROOM2Q13796 1616 aa19.92■□□□□ 0.78
SND1-215ENST00000492772 FHAD1B1AJZ9 1412 aa19.89■□□□□ 0.77
SND1-215ENST00000492772 ERICH3Q5RHP9 1530 aa19.88■□□□□ 0.77
SND1-215ENST00000492772 AEBP2Q6ZN18 517 aaPredicted RBP19.85■□□□□ 0.77
SND1-215ENST00000492772 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
SND1-215ENST00000492772 KIF13AQ9H1H9 1805 aa19.75■□□□□ 0.75
SND1-215ENST00000492772 RUSC2Q8N2Y8 1516 aa19.73■□□□□ 0.75
SND1-215ENST00000492772 PRG4Q92954 1404 aaPredicted RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms