RNA–Protein interactions for RNA: ENST00000618411.4

SRRT-217, Transcript of serrate, RNA effector molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SRRT, Length 2,893 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-217ENST00000618411 NISCHQ9Y2I1 1504 aa28.79■■■□□ 2.2
SRRT-217ENST00000618411 HRCP23327 699 aa25.55■■□□□ 1.68
SRRT-217ENST00000618411 SHROOM4Q9ULL8 1493 aa25.14■■□□□ 1.62
SRRT-217ENST00000618411 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
SRRT-217ENST00000618411 PCGF6Q9BYE7 350 aa24.91■■□□□ 1.58
SRRT-217ENST00000618411 MYO15BQ96JP2 1530 aa24.91■■□□□ 1.58
SRRT-217ENST00000618411 CHIC1Q5VXU3 224 aa24.83■■□□□ 1.57
SRRT-217ENST00000618411 PPARGC1BQ86YN6 1023 aaKnown RBP24.8■■□□□ 1.56
SRRT-217ENST00000618411 PELP1Q8IZL8 1130 aaKnown RBP24.74■■□□□ 1.55
SRRT-217ENST00000618411 DCAF1Q9Y4B6 1507 aa24.59■■□□□ 1.53
SRRT-217ENST00000618411 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
SRRT-217ENST00000618411 TRIM26Q12899 539 aaPredicted RBP24.28■■□□□ 1.48
SRRT-217ENST00000618411 CCDC180Q9P1Z9 1646 aa24.26■■□□□ 1.47
SRRT-217ENST00000618411 ZEB1P37275 1124 aaPredicted RBP24.18■■□□□ 1.46
SRRT-217ENST00000618411 LOC105371045A0A1W2PR82 267 aa24.12■■□□□ 1.45
SRRT-217ENST00000618411 SCAF1Q9H7N4 1312 aaKnown RBP24.05■■□□□ 1.44
SRRT-217ENST00000618411 MYT1Q01538 1121 aa23.82■■□□□ 1.4
SRRT-217ENST00000618411 DCAF8L2P0C7V8 631 aa23.65■■□□□ 1.38
SRRT-217ENST00000618411 ACIN1Q9UKV3 1341 aaKnown RBP23.56■■□□□ 1.36
SRRT-217ENST00000618411 NEUROD1Q13562 356 aa23.41■■□□□ 1.34
SRRT-217ENST00000618411 TRIM41Q8WV44 630 aa23.33■■□□□ 1.32
SRRT-217ENST00000618411 CENPBP07199 599 aaPredicted RBP23.31■■□□□ 1.32
SRRT-217ENST00000618411 ABCC9O60706 1549 aa23.28■■□□□ 1.32
SRRT-217ENST00000618411 GTF3C3Q9Y5Q9 886 aa23.28■■□□□ 1.32
SRRT-217ENST00000618411 DIEXFQ68CQ4 756 aaKnown RBP23.15■■□□□ 1.3
SRRT-217ENST00000618411 FAM9AQ8IZU1 332 aaPredicted RBP23.14■■□□□ 1.29
SRRT-217ENST00000618411 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
SRRT-217ENST00000618411 CCER1Q8TC90 406 aaPredicted RBP23.11■■□□□ 1.29
SRRT-217ENST00000618411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.09■■□□□ 1.29
SRRT-217ENST00000618411 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
SRRT-217ENST00000618411 EHMT2Q96KQ7 1210 aa22.88■■□□□ 1.25
SRRT-217ENST00000618411 ZNF316A6NFI3 1004 aaPredicted RBP22.77■■□□□ 1.24
SRRT-217ENST00000618411 WRNQ14191 1432 aaPredicted RBP eCLIP22.69■■□□□ 1.226e-7■■■■■ 33.4
SRRT-217ENST00000618411 SCRIBQ14160 1630 aa22.68■■□□□ 1.22
SRRT-217ENST00000618411 YTHDC1Q96MU7 727 aaKnown RBP22.6■■□□□ 1.21
SRRT-217ENST00000618411 MIER1Q8N108 512 aa22.53■■□□□ 1.2
SRRT-217ENST00000618411 CEP162Q5TB80 1403 aa22.44■■□□□ 1.18
SRRT-217ENST00000618411 CLSPNQ9HAW4 1339 aa22.43■■□□□ 1.18
SRRT-217ENST00000618411 MROH2BQ7Z745 1585 aa22.42■■□□□ 1.18
SRRT-217ENST00000618411 EIF4G1Q04637 1599 aaKnown RBP22.41■■□□□ 1.18
SRRT-217ENST00000618411 CECR2Q9BXF3 1484 aa22.4■■□□□ 1.18
SRRT-217ENST00000618411 TTBK1Q5TCY1 1321 aaPredicted RBP22.39■■□□□ 1.17
SRRT-217ENST00000618411 TNIKQ9UKE5 1360 aa22.37■■□□□ 1.17
SRRT-217ENST00000618411 WIZO95785 1651 aa22.33■■□□□ 1.17
SRRT-217ENST00000618411 BAZ1AQ9NRL2 1556 aaPredicted RBP22.28■■□□□ 1.16
SRRT-217ENST00000618411 SUPT16HQ9Y5B9 1047 aaKnown RBP22.22■■□□□ 1.15
SRRT-217ENST00000618411 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
SRRT-217ENST00000618411 EEA1Q15075 1411 aa22.2■■□□□ 1.15
SRRT-217ENST00000618411 ANP32EQ9BTT0 268 aa22.19■■□□□ 1.14
SRRT-217ENST00000618411 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
SRRT-217ENST00000618411 CSRNP3Q8WYN3 585 aa22.13■■□□□ 1.13
SRRT-217ENST00000618411 SOGA1O94964 1423 aa22.12■■□□□ 1.13
SRRT-217ENST00000618411 TSHZ2Q9NRE2 1034 aa22.12■■□□□ 1.13
SRRT-217ENST00000618411 HNRNPUL2Q1KMD3 747 aaKnown RBP22.1■■□□□ 1.13
SRRT-217ENST00000618411 UBTFP17480 764 aaKnown RBP22.1■■□□□ 1.13
SRRT-217ENST00000618411 NACADO15069 1562 aa22.07■■□□□ 1.12
SRRT-217ENST00000618411 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
SRRT-217ENST00000618411 BCL11AQ9H165 835 aa22.03■■□□□ 1.12
SRRT-217ENST00000618411 TOP2AP11388 1531 aaKnown RBP22■■□□□ 1.11
SRRT-217ENST00000618411 RUSC2Q8N2Y8 1516 aa21.96■■□□□ 1.11
SRRT-217ENST00000618411 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
SRRT-217ENST00000618411 VPS8Q8N3P4 1428 aa21.87■■□□□ 1.09
SRRT-217ENST00000618411 CEP164Q9UPV0 1460 aa21.85■■□□□ 1.09
SRRT-217ENST00000618411 CLIP1P30622 1438 aa21.85■■□□□ 1.09
SRRT-217ENST00000618411 KIF21BO75037 1637 aa21.82■■□□□ 1.08
SRRT-217ENST00000618411 APLP2Q06481 763 aa21.82■■□□□ 1.08
SRRT-217ENST00000618411 DHX57Q6P158 1386 aaKnown RBP21.82■■□□□ 1.08
SRRT-217ENST00000618411 SMARCA4P51532 1647 aa21.74■■□□□ 1.07
SRRT-217ENST00000618411 BAZ1BQ9UIG0 1483 aaKnown RBP21.73■■□□□ 1.07
SRRT-217ENST00000618411 FKBP8Q14318 412 aa21.61■■□□□ 1.05
SRRT-217ENST00000618411 RBM19Q9Y4C8 960 aaKnown RBP21.61■■□□□ 1.05
SRRT-217ENST00000618411 BCANQ96GW7 911 aa21.59■■□□□ 1.05
SRRT-217ENST00000618411 KCNH8Q96L42 1107 aa21.57■■□□□ 1.04
SRRT-217ENST00000618411 CUX2O14529 1486 aa21.55■■□□□ 1.04
SRRT-217ENST00000618411 RAPGEF2Q9Y4G8 1499 aa21.54■■□□□ 1.04
SRRT-217ENST00000618411 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
SRRT-217ENST00000618411 NEFLP07196 543 aa21.51■■□□□ 1.03
SRRT-217ENST00000618411 RRBP1Q9P2E9 1410 aaKnown RBP21.5■■□□□ 1.03
SRRT-217ENST00000618411 KANK4Q5T7N3 995 aaPredicted RBP21.39■■□□□ 1.02
SRRT-217ENST00000618411 RANGAP1P46060 587 aaPredicted RBP21.38■■□□□ 1.01
SRRT-217ENST00000618411 ARAP1Q96P48 1450 aa21.38■■□□□ 1.01
SRRT-217ENST00000618411 MSH5O43196 834 aa21.36■■□□□ 1.01
SRRT-217ENST00000618411 CCER2I3L3R5 266 aa21.35■■□□□ 1.01
SRRT-217ENST00000618411 CCNB3Q8WWL7 1395 aa21.35■■□□□ 1.01
SRRT-217ENST00000618411 FANCIQ9NVI1 1328 aa21.35■■□□□ 1.01
SRRT-217ENST00000618411 DDX10Q13206 875 aaKnown RBP21.34■■□□□ 1.01
SRRT-217ENST00000618411 ERICH3Q5RHP9 1530 aa21.33■■□□□ 1.01
SRRT-217ENST00000618411 MAPKBP1O60336 1514 aa21.32■■□□□ 1
SRRT-217ENST00000618411 PPP1R15AO75807 674 aaPredicted RBP21.31■■□□□ 1
SRRT-217ENST00000618411 ITGAEP38570 1179 aa21.3■■□□□ 1
SRRT-217ENST00000618411 PEG3Q9GZU2 1588 aa21.29■■□□□ 1
SRRT-217ENST00000618411 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
SRRT-217ENST00000618411 PRXQ9BXM0 1461 aa21.26■□□□□ 0.99
SRRT-217ENST00000618411 MYT1LQ9UL68 1186 aa21.26■□□□□ 0.99
SRRT-217ENST00000618411 WDR97A6NE52 1622 aa21.24■□□□□ 0.99
SRRT-217ENST00000618411 TRIM52Q96A61 297 aa21.23■□□□□ 0.99
SRRT-217ENST00000618411 TIMELESSQ9UNS1 1208 aa21.23■□□□□ 0.99
SRRT-217ENST00000618411 ANP32CO43423 234 aa21.22■□□□□ 0.99
SRRT-217ENST00000618411 TOP2BQ02880 1626 aa21.21■□□□□ 0.99
SRRT-217ENST00000618411 UNC13AQ9UPW8 1703 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms