RNA–Protein interactions for RNA: ENST00000620277.4

DKC1-213, Transcript of dyskerin pseudouridine synthase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene DKC1, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DKC1-213ENST00000620277 NISCHQ9Y2I1 1504 aa31.46■■■□□ 2.63
DKC1-213ENST00000620277 SHROOM4Q9ULL8 1493 aa28.4■■■□□ 2.14
DKC1-213ENST00000620277 SUPT5HO00267 1087 aaKnown RBP28.05■■■□□ 2.08
DKC1-213ENST00000620277 DCAF8L2P0C7V8 631 aa27.64■■■□□ 2.01
DKC1-213ENST00000620277 PCGF6Q9BYE7 350 aa26.85■■□□□ 1.89
DKC1-213ENST00000620277 CHIC1Q5VXU3 224 aa26.84■■□□□ 1.89
DKC1-213ENST00000620277 MYO15BQ96JP2 1530 aa26.75■■□□□ 1.87
DKC1-213ENST00000620277 PPARGC1BQ86YN6 1023 aaKnown RBP26.62■■□□□ 1.85
DKC1-213ENST00000620277 LOC105371045A0A1W2PR82 267 aa26.58■■□□□ 1.85
DKC1-213ENST00000620277 HRCP23327 699 aa26.54■■□□□ 1.84
DKC1-213ENST00000620277 ZCCHC6Q5VYS8 1495 aaKnown RBP26.54■■□□□ 1.84
DKC1-213ENST00000620277 EHMT2Q96KQ7 1210 aa26.39■■□□□ 1.82
DKC1-213ENST00000620277 FAM9AQ8IZU1 332 aaPredicted RBP26.12■■□□□ 1.77
DKC1-213ENST00000620277 CCDC180Q9P1Z9 1646 aa25.97■■□□□ 1.75
DKC1-213ENST00000620277 TRIM41Q8WV44 630 aa25.71■■□□□ 1.71
DKC1-213ENST00000620277 TRIM26Q12899 539 aaPredicted RBP25.7■■□□□ 1.7
DKC1-213ENST00000620277 DCAF1Q9Y4B6 1507 aa25.51■■□□□ 1.67
DKC1-213ENST00000620277 TTBK1Q5TCY1 1321 aaPredicted RBP25.5■■□□□ 1.67
DKC1-213ENST00000620277 SCRIBQ14160 1630 aa25.38■■□□□ 1.65
DKC1-213ENST00000620277 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
DKC1-213ENST00000620277 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.16■■□□□ 1.62
DKC1-213ENST00000620277 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
DKC1-213ENST00000620277 ABCC9O60706 1549 aa25.08■■□□□ 1.61
DKC1-213ENST00000620277 ZEB1P37275 1124 aaPredicted RBP25.01■■□□□ 1.6
DKC1-213ENST00000620277 CECR2Q9BXF3 1484 aa25■■□□□ 1.59
DKC1-213ENST00000620277 CCER1Q8TC90 406 aaPredicted RBP24.98■■□□□ 1.59
DKC1-213ENST00000620277 SCAF1Q9H7N4 1312 aaKnown RBP24.92■■□□□ 1.58
DKC1-213ENST00000620277 MROH2BQ7Z745 1585 aa24.75■■□□□ 1.55
DKC1-213ENST00000620277 RANGAP1P46060 587 aaPredicted RBP24.72■■□□□ 1.55
DKC1-213ENST00000620277 UBTFP17480 764 aaKnown RBP24.64■■□□□ 1.54
DKC1-213ENST00000620277 WIZO95785 1651 aa24.62■■□□□ 1.53
DKC1-213ENST00000620277 NEUROD1Q13562 356 aa24.58■■□□□ 1.52
DKC1-213ENST00000620277 YTHDC1Q96MU7 727 aaKnown RBP24.55■■□□□ 1.52
DKC1-213ENST00000620277 DIEXFQ68CQ4 756 aaKnown RBP24.53■■□□□ 1.52
DKC1-213ENST00000620277 PABPN1Q86U42 306 aaKnown RBP eCLIP24.49■■□□□ 1.51
DKC1-213ENST00000620277 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
DKC1-213ENST00000620277 HNRNPUL2Q1KMD3 747 aaKnown RBP24.46■■□□□ 1.51
DKC1-213ENST00000620277 GTF3C3Q9Y5Q9 886 aa24.42■■□□□ 1.5
DKC1-213ENST00000620277 ACIN1Q9UKV3 1341 aaKnown RBP24.39■■□□□ 1.5
DKC1-213ENST00000620277 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.49
DKC1-213ENST00000620277 SOGA1O94964 1423 aa24.37■■□□□ 1.49
DKC1-213ENST00000620277 RUSC2Q8N2Y8 1516 aa24.27■■□□□ 1.48
DKC1-213ENST00000620277 CSRNP3Q8WYN3 585 aa24.25■■□□□ 1.47
DKC1-213ENST00000620277 CEP162Q5TB80 1403 aa24.24■■□□□ 1.47
DKC1-213ENST00000620277 NACADO15069 1562 aa24.22■■□□□ 1.47
DKC1-213ENST00000620277 CENPBP07199 599 aaPredicted RBP24.19■■□□□ 1.46
DKC1-213ENST00000620277 PELP1Q8IZL8 1130 aaKnown RBP24.15■■□□□ 1.46
DKC1-213ENST00000620277 ZNF316A6NFI3 1004 aaPredicted RBP24.07■■□□□ 1.44
DKC1-213ENST00000620277 BAZ1AQ9NRL2 1556 aaPredicted RBP24.06■■□□□ 1.44
DKC1-213ENST00000620277 MIER1Q8N108 512 aa24.04■■□□□ 1.44
DKC1-213ENST00000620277 APLP2Q06481 763 aa24.03■■□□□ 1.44
DKC1-213ENST00000620277 TNIKQ9UKE5 1360 aa23.96■■□□□ 1.43
DKC1-213ENST00000620277 ITGAEP38570 1179 aa23.9■■□□□ 1.42
DKC1-213ENST00000620277 SMARCA2P51531 1590 aa23.88■■□□□ 1.41
DKC1-213ENST00000620277 TOP2AP11388 1531 aaKnown RBP23.88■■□□□ 1.41
DKC1-213ENST00000620277 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
DKC1-213ENST00000620277 SMARCA4P51532 1647 aa23.83■■□□□ 1.41
DKC1-213ENST00000620277 WRNQ14191 1432 aaPredicted RBP eCLIP23.82■■□□□ 1.4
DKC1-213ENST00000620277 GOLGA3Q08378 1498 aa23.76■■□□□ 1.39
DKC1-213ENST00000620277 CLIP1P30622 1438 aa23.75■■□□□ 1.39
DKC1-213ENST00000620277 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
DKC1-213ENST00000620277 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
DKC1-213ENST00000620277 EEA1Q15075 1411 aa23.58■■□□□ 1.37
DKC1-213ENST00000620277 SYNJ1O43426 1573 aa23.55■■□□□ 1.36
DKC1-213ENST00000620277 ATP1B4Q9UN42 357 aaPredicted RBP23.55■■□□□ 1.36
DKC1-213ENST00000620277 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
DKC1-213ENST00000620277 UNC13AQ9UPW8 1703 aa23.52■■□□□ 1.36
DKC1-213ENST00000620277 VPS8Q8N3P4 1428 aa23.48■■□□□ 1.35
DKC1-213ENST00000620277 KCNH8Q96L42 1107 aa23.43■■□□□ 1.34
DKC1-213ENST00000620277 P3H3Q8IVL6 736 aa23.42■■□□□ 1.34
DKC1-213ENST00000620277 HIRIP3Q9BW71 556 aaPredicted RBP23.41■■□□□ 1.34
DKC1-213ENST00000620277 BCANQ96GW7 911 aa23.39■■□□□ 1.34
DKC1-213ENST00000620277 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.33
DKC1-213ENST00000620277 ATAD2BQ9ULI0 1458 aa23.33■■□□□ 1.33
DKC1-213ENST00000620277 BICRAQ9NZM4 1560 aa23.32■■□□□ 1.32
DKC1-213ENST00000620277 KIF21BO75037 1637 aa23.31■■□□□ 1.32
DKC1-213ENST00000620277 DHX57Q6P158 1386 aaKnown RBP23.3■■□□□ 1.32
DKC1-213ENST00000620277 FAM50AQ14320 339 aaKnown RBP23.28■■□□□ 1.32
DKC1-213ENST00000620277 SIN3AQ96ST3 1273 aa23.23■■□□□ 1.31
DKC1-213ENST00000620277 SUPT16HQ9Y5B9 1047 aaKnown RBP23.22■■□□□ 1.31
DKC1-213ENST00000620277 DDX10Q13206 875 aaKnown RBP23.21■■□□□ 1.31
DKC1-213ENST00000620277 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
DKC1-213ENST00000620277 TRIM52Q96A61 297 aa23.06■■□□□ 1.28
DKC1-213ENST00000620277 CCNB3Q8WWL7 1395 aa23.06■■□□□ 1.28
DKC1-213ENST00000620277 RAB3GAP2Q9H2M9 1393 aa23.02■■□□□ 1.28
DKC1-213ENST00000620277 FKBP8Q14318 412 aa23■■□□□ 1.27
DKC1-213ENST00000620277 KIF27Q86VH2 1401 aa22.99■■□□□ 1.27
DKC1-213ENST00000620277 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
DKC1-213ENST00000620277 TOP2BQ02880 1626 aa22.96■■□□□ 1.27
DKC1-213ENST00000620277 PEG3Q9GZU2 1588 aa22.94■■□□□ 1.26
DKC1-213ENST00000620277 CUX1P39880 1505 aa22.93■■□□□ 1.26
DKC1-213ENST00000620277 TSHZ2Q9NRE2 1034 aa22.93■■□□□ 1.26
DKC1-213ENST00000620277 CLSPNQ9HAW4 1339 aa22.91■■□□□ 1.26
DKC1-213ENST00000620277 ARHGAP35Q9NRY4 1499 aa22.91■■□□□ 1.26
DKC1-213ENST00000620277 CUX2O14529 1486 aa22.9■■□□□ 1.26
DKC1-213ENST00000620277 ARID3CA6NKF2 412 aa22.88■■□□□ 1.25
DKC1-213ENST00000620277 CNGB1Q14028 1251 aaPredicted RBP22.88■■□□□ 1.25
DKC1-213ENST00000620277 IRX6P78412 446 aaPredicted RBP22.83■■□□□ 1.25
DKC1-213ENST00000620277 RRBP1Q9P2E9 1410 aaKnown RBP22.83■■□□□ 1.25
DKC1-213ENST00000620277 PHLDB1Q86UU1 1377 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms