RNA–Protein interactions for RNA: ENST00000464148.2

MRPL55-224, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 5

Gene MRPL55, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-224ENST00000464148 NISCHQ9Y2I1 1504 aa33.7■■■□□ 2.99
MRPL55-224ENST00000464148 ABCC9O60706 1549 aa30.77■■■□□ 2.52
MRPL55-224ENST00000464148 CCDC180Q9P1Z9 1646 aa30.4■■■□□ 2.46
MRPL55-224ENST00000464148 RB1CC1Q8TDY2 1594 aa29.13■■■□□ 2.25
MRPL55-224ENST00000464148 DNAJC5BQ9UF47 199 aa29.12■■■□□ 2.25
MRPL55-224ENST00000464148 NACADO15069 1562 aa28.82■■■□□ 2.2
MRPL55-224ENST00000464148 DCAF8L2P0C7V8 631 aa28.71■■■□□ 2.19
MRPL55-224ENST00000464148 PABPN1Q86U42 306 aaKnown RBP eCLIP28.6■■■□□ 2.17
MRPL55-224ENST00000464148 UNC13AQ9UPW8 1703 aa28.44■■■□□ 2.14
MRPL55-224ENST00000464148 MYO15BQ96JP2 1530 aa28.27■■■□□ 2.12
MRPL55-224ENST00000464148 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
MRPL55-224ENST00000464148 ZCCHC6Q5VYS8 1495 aaKnown RBP27.84■■■□□ 2.05
MRPL55-224ENST00000464148 SHROOM4Q9ULL8 1493 aa27.83■■■□□ 2.04
MRPL55-224ENST00000464148 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
MRPL55-224ENST00000464148 CC2D2AQ9P2K1 1620 aa27.75■■■□□ 2.03
MRPL55-224ENST00000464148 CECR2Q9BXF3 1484 aa27.74■■■□□ 2.03
MRPL55-224ENST00000464148 SCRIBQ14160 1630 aa27.71■■■□□ 2.03
MRPL55-224ENST00000464148 EIF4G1Q04637 1599 aaKnown RBP27.6■■■□□ 2.01
MRPL55-224ENST00000464148 DNAJC5Q9H3Z4 198 aa27.01■■□□□ 1.91
MRPL55-224ENST00000464148 CUX2O14529 1486 aa26.62■■□□□ 1.85
MRPL55-224ENST00000464148 ERCC6Q03468 1493 aa26.61■■□□□ 1.85
MRPL55-224ENST00000464148 NCAPD3P42695 1498 aa26.6■■□□□ 1.85
MRPL55-224ENST00000464148 ATAD2BQ9ULI0 1458 aa26.47■■□□□ 1.83
MRPL55-224ENST00000464148 SMARCA2P51531 1590 aa26.4■■□□□ 1.82
MRPL55-224ENST00000464148 SMARCA4P51532 1647 aa26.37■■□□□ 1.81
MRPL55-224ENST00000464148 HMGXB3Q12766 1538 aa26.37■■□□□ 1.81
MRPL55-224ENST00000464148 NESP48681 1621 aa26.32■■□□□ 1.8
MRPL55-224ENST00000464148 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
MRPL55-224ENST00000464148 BAZ1AQ9NRL2 1556 aaPredicted RBP26.2■■□□□ 1.79
MRPL55-224ENST00000464148 THOC2Q8NI27 1593 aaKnown RBP26.1■■□□□ 1.77
MRPL55-224ENST00000464148 PEG3Q9GZU2 1588 aa26.09■■□□□ 1.77
MRPL55-224ENST00000464148 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
MRPL55-224ENST00000464148 KIF21AQ7Z4S6 1674 aa25.97■■□□□ 1.75
MRPL55-224ENST00000464148 MROH2BQ7Z745 1585 aa25.97■■□□□ 1.75
MRPL55-224ENST00000464148 PDS5BQ9NTI5 1447 aa25.96■■□□□ 1.75
MRPL55-224ENST00000464148 CADPSQ9ULU8 1353 aa25.79■■□□□ 1.72
MRPL55-224ENST00000464148 TRIM41Q8WV44 630 aa25.76■■□□□ 1.71
MRPL55-224ENST00000464148 MRC2Q9UBG0 1479 aa25.73■■□□□ 1.71
MRPL55-224ENST00000464148 WDR62O43379 1518 aa25.67■■□□□ 1.7
MRPL55-224ENST00000464148 WIZO95785 1651 aa25.66■■□□□ 1.7
MRPL55-224ENST00000464148 CEP164Q9UPV0 1460 aa25.58■■□□□ 1.69
MRPL55-224ENST00000464148 FANCD2Q9BXW9 1451 aa25.51■■□□□ 1.67
MRPL55-224ENST00000464148 CFTRP13569 1480 aa25.41■■□□□ 1.66
MRPL55-224ENST00000464148 OSCARQ8IYS5 282 aa25.4■■□□□ 1.66
MRPL55-224ENST00000464148 URB2Q14146 1524 aaKnown RBP25.31■■□□□ 1.64
MRPL55-224ENST00000464148 RSF1Q96T23 1441 aaPredicted RBP25.3■■□□□ 1.64
MRPL55-224ENST00000464148 TOP2AP11388 1531 aaKnown RBP25.3■■□□□ 1.64
MRPL55-224ENST00000464148 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
MRPL55-224ENST00000464148 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.61
MRPL55-224ENST00000464148 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.61
MRPL55-224ENST00000464148 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.61
MRPL55-224ENST00000464148 IFT140Q96RY7 1462 aa25.07■■□□□ 1.6
MRPL55-224ENST00000464148 ZNF608Q9ULD9 1512 aaPredicted RBP25.06■■□□□ 1.6
MRPL55-224ENST00000464148 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
MRPL55-224ENST00000464148 TOPBP1Q92547 1522 aa24.98■■□□□ 1.59
MRPL55-224ENST00000464148 ARHGEF11O15085 1522 aa24.96■■□□□ 1.59
MRPL55-224ENST00000464148 EIF4G3O43432 1585 aaKnown RBP24.92■■□□□ 1.58
MRPL55-224ENST00000464148 ABCC8Q09428 1581 aa24.92■■□□□ 1.58
MRPL55-224ENST00000464148 DNMBPQ6XZF7 1577 aa24.86■■□□□ 1.57
MRPL55-224ENST00000464148 CYB5RLQ6IPT4 315 aa24.84■■□□□ 1.57
MRPL55-224ENST00000464148 AQRO60306 1485 aaKnown RBP eCLIP24.81■■□□□ 1.563e-7■■■■■ 28.3
MRPL55-224ENST00000464148 CHD1O14646 1710 aa24.8■■□□□ 1.56
MRPL55-224ENST00000464148 FBLN2P98095 1184 aa24.78■■□□□ 1.56
MRPL55-224ENST00000464148 TARBP1Q13395 1621 aaKnown RBP24.78■■□□□ 1.56
MRPL55-224ENST00000464148 TRHP20396 242 aaPredicted RBP24.72■■□□□ 1.55
MRPL55-224ENST00000464148 POLA1P09884 1462 aaPredicted RBP24.7■■□□□ 1.54
MRPL55-224ENST00000464148 ARAP1Q96P48 1450 aa24.68■■□□□ 1.54
MRPL55-224ENST00000464148 RAD54L2Q9Y4B4 1467 aa24.63■■□□□ 1.53
MRPL55-224ENST00000464148 SOGA1O94964 1423 aa24.61■■□□□ 1.53
MRPL55-224ENST00000464148 TDRD9Q8NDG6 1382 aaKnown RBP24.6■■□□□ 1.53
MRPL55-224ENST00000464148 SNAPC4Q5SXM2 1469 aa24.54■■□□□ 1.52
MRPL55-224ENST00000464148 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
MRPL55-224ENST00000464148 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
MRPL55-224ENST00000464148 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
MRPL55-224ENST00000464148 SYNJ1O43426 1573 aa24.47■■□□□ 1.51
MRPL55-224ENST00000464148 CLASP1Q7Z460 1538 aa24.47■■□□□ 1.51
MRPL55-224ENST00000464148 MAGI1Q96QZ7 1491 aaPredicted RBP24.45■■□□□ 1.51
MRPL55-224ENST00000464148 CUX1P39880 1505 aa24.42■■□□□ 1.5
MRPL55-224ENST00000464148 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
MRPL55-224ENST00000464148 SYNJ2O15056 1496 aa24.38■■□□□ 1.49
MRPL55-224ENST00000464148 PBRM1Q86U86 1689 aa24.31■■□□□ 1.48
MRPL55-224ENST00000464148 GAPVD1Q14C86 1478 aa24.3■■□□□ 1.48
MRPL55-224ENST00000464148 AEBP2Q6ZN18 517 aaPredicted RBP24.26■■□□□ 1.47
MRPL55-224ENST00000464148 ABCA10Q8WWZ4 1543 aa24.2■■□□□ 1.46
MRPL55-224ENST00000464148 ABCA5Q8WWZ7 1642 aa24.19■■□□□ 1.46
MRPL55-224ENST00000464148 GRIN2AQ12879 1464 aa24.11■■□□□ 1.45
MRPL55-224ENST00000464148 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.45
MRPL55-224ENST00000464148 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
MRPL55-224ENST00000464148 ADAMTS12P58397 1594 aa24.04■■□□□ 1.44
MRPL55-224ENST00000464148 CEP170Q5SW79 1584 aa24.03■■□□□ 1.44
MRPL55-224ENST00000464148 SUPT5HO00267 1087 aaKnown RBP24.02■■□□□ 1.44
MRPL55-224ENST00000464148 NUP160Q12769 1436 aa24.01■■□□□ 1.43
MRPL55-224ENST00000464148 FHAD1B1AJZ9 1412 aa23.96■■□□□ 1.43
MRPL55-224ENST00000464148 SHROOM2Q13796 1616 aa23.95■■□□□ 1.43
MRPL55-224ENST00000464148 TOP2BQ02880 1626 aa23.95■■□□□ 1.42
MRPL55-224ENST00000464148 BIVM-ERCC5R4GMW8 1640 aa23.95■■□□□ 1.42
MRPL55-224ENST00000464148 ERICH3Q5RHP9 1530 aa23.89■■□□□ 1.42
MRPL55-224ENST00000464148 PRG4Q92954 1404 aaPredicted RBP23.85■■□□□ 1.41
MRPL55-224ENST00000464148 KIF13AQ9H1H9 1805 aa23.83■■□□□ 1.41
MRPL55-224ENST00000464148 JPH4Q96JJ6 628 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms