RNA–Protein interactions for RNA: ENST00000424011.6

CMTM3-202, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CMTM3, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-202ENST00000424011 NISCHQ9Y2I1 1504 aa36.42■■■■□ 3.42
CMTM3-202ENST00000424011 CCDC180Q9P1Z9 1646 aa31.72■■■□□ 2.67
CMTM3-202ENST00000424011 ZCCHC6Q5VYS8 1495 aaKnown RBP30.59■■■□□ 2.49
CMTM3-202ENST00000424011 DCAF8L2P0C7V8 631 aa30.15■■■□□ 2.42
CMTM3-202ENST00000424011 ABCC9O60706 1549 aa30.15■■■□□ 2.42
CMTM3-202ENST00000424011 DCAF1Q9Y4B6 1507 aa30.11■■■□□ 2.41
CMTM3-202ENST00000424011 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
CMTM3-202ENST00000424011 MYO15BQ96JP2 1530 aa29.8■■■□□ 2.36
CMTM3-202ENST00000424011 NACADO15069 1562 aa29.62■■■□□ 2.33
CMTM3-202ENST00000424011 RB1CC1Q8TDY2 1594 aa29.38■■■□□ 2.29
CMTM3-202ENST00000424011 SCRIBQ14160 1630 aa29.18■■■□□ 2.26
CMTM3-202ENST00000424011 SUPT5HO00267 1087 aaKnown RBP29■■■□□ 2.23
CMTM3-202ENST00000424011 UNC13AQ9UPW8 1703 aa28.73■■■□□ 2.19
CMTM3-202ENST00000424011 BICRAQ9NZM4 1560 aa28.5■■■□□ 2.15
CMTM3-202ENST00000424011 PABPN1Q86U42 306 aaKnown RBP eCLIP28.46■■■□□ 2.15
CMTM3-202ENST00000424011 RSF1Q96T23 1441 aaPredicted RBP28.35■■■□□ 2.13
CMTM3-202ENST00000424011 CECR2Q9BXF3 1484 aa28.32■■■□□ 2.12
CMTM3-202ENST00000424011 MROH2BQ7Z745 1585 aa28.12■■■□□ 2.09
CMTM3-202ENST00000424011 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
CMTM3-202ENST00000424011 SMARCA4P51532 1647 aa27.98■■■□□ 2.07
CMTM3-202ENST00000424011 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.07
CMTM3-202ENST00000424011 WIZO95785 1651 aa27.86■■■□□ 2.05
CMTM3-202ENST00000424011 PEG3Q9GZU2 1588 aa27.67■■■□□ 2.02
CMTM3-202ENST00000424011 EIF4G1Q04637 1599 aaKnown RBP27.66■■■□□ 2.02
CMTM3-202ENST00000424011 TOP2AP11388 1531 aaKnown RBP27.6■■■□□ 2.01
CMTM3-202ENST00000424011 ATAD2BQ9ULI0 1458 aa27.59■■■□□ 2.01
CMTM3-202ENST00000424011 SMARCA2P51531 1590 aa27.54■■■□□ 2
CMTM3-202ENST00000424011 BAZ1BQ9UIG0 1483 aaKnown RBP27.41■■□□□ 1.98
CMTM3-202ENST00000424011 NCAPD3P42695 1498 aa27.38■■□□□ 1.97
CMTM3-202ENST00000424011 CCDC88BA6NC98 1476 aa27.33■■□□□ 1.97
CMTM3-202ENST00000424011 HMGXB3Q12766 1538 aa27.29■■□□□ 1.96
CMTM3-202ENST00000424011 TRIM41Q8WV44 630 aa27.28■■□□□ 1.96
CMTM3-202ENST00000424011 CC2D2AQ9P2K1 1620 aa27.26■■□□□ 1.95
CMTM3-202ENST00000424011 LOC105371045A0A1W2PR82 267 aa26.95■■□□□ 1.9
CMTM3-202ENST00000424011 ABCC8Q09428 1581 aa26.84■■□□□ 1.89
CMTM3-202ENST00000424011 FAM9AQ8IZU1 332 aaPredicted RBP26.74■■□□□ 1.87
CMTM3-202ENST00000424011 CFTRP13569 1480 aa26.74■■□□□ 1.87
CMTM3-202ENST00000424011 DNAJC5BQ9UF47 199 aa26.74■■□□□ 1.87
CMTM3-202ENST00000424011 WRNQ14191 1432 aaPredicted RBP eCLIP26.69■■□□□ 1.86
CMTM3-202ENST00000424011 CADPSQ9ULU8 1353 aa26.68■■□□□ 1.86
CMTM3-202ENST00000424011 EEA1Q15075 1411 aa26.56■■□□□ 1.84
CMTM3-202ENST00000424011 SYNJ1O43426 1573 aa26.49■■□□□ 1.83
CMTM3-202ENST00000424011 PRDM2Q13029 1718 aa26.47■■□□□ 1.83
CMTM3-202ENST00000424011 SOGA1O94964 1423 aa26.45■■□□□ 1.83
CMTM3-202ENST00000424011 NESP48681 1621 aa26.44■■□□□ 1.82
CMTM3-202ENST00000424011 LAMC3Q9Y6N6 1575 aa26.42■■□□□ 1.82
CMTM3-202ENST00000424011 PCGF6Q9BYE7 350 aa26.41■■□□□ 1.82
CMTM3-202ENST00000424011 TOP2BQ02880 1626 aa26.39■■□□□ 1.82
CMTM3-202ENST00000424011 CSRNP3Q8WYN3 585 aa26.36■■□□□ 1.81
CMTM3-202ENST00000424011 FANCD2Q9BXW9 1451 aa26.36■■□□□ 1.81
CMTM3-202ENST00000424011 BIVM-ERCC5R4GMW8 1640 aa26.34■■□□□ 1.81
CMTM3-202ENST00000424011 EHMT2Q96KQ7 1210 aa26.33■■□□□ 1.81
CMTM3-202ENST00000424011 CUX1P39880 1505 aa26.29■■□□□ 1.8
CMTM3-202ENST00000424011 RUSC2Q8N2Y8 1516 aa26.29■■□□□ 1.8
CMTM3-202ENST00000424011 PDS5BQ9NTI5 1447 aa26.26■■□□□ 1.79
CMTM3-202ENST00000424011 HRCP23327 699 aa26.22■■□□□ 1.79
CMTM3-202ENST00000424011 CEP164Q9UPV0 1460 aa26.18■■□□□ 1.78
CMTM3-202ENST00000424011 GOLGA3Q08378 1498 aa26.17■■□□□ 1.78
CMTM3-202ENST00000424011 TNIKQ9UKE5 1360 aa26.17■■□□□ 1.78
CMTM3-202ENST00000424011 KIF21BO75037 1637 aa26.11■■□□□ 1.77
CMTM3-202ENST00000424011 TRIM26Q12899 539 aaPredicted RBP26.11■■□□□ 1.77
CMTM3-202ENST00000424011 DNMBPQ6XZF7 1577 aa26.07■■□□□ 1.76
CMTM3-202ENST00000424011 UBTFP17480 764 aaKnown RBP26.07■■□□□ 1.76
CMTM3-202ENST00000424011 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
CMTM3-202ENST00000424011 TOPBP1Q92547 1522 aa26.06■■□□□ 1.76
CMTM3-202ENST00000424011 CEP162Q5TB80 1403 aa26.03■■□□□ 1.76
CMTM3-202ENST00000424011 FGD5Q6ZNL6 1462 aa26.02■■□□□ 1.76
CMTM3-202ENST00000424011 URB2Q14146 1524 aaKnown RBP26.02■■□□□ 1.76
CMTM3-202ENST00000424011 PELP1Q8IZL8 1130 aaKnown RBP26.02■■□□□ 1.76
CMTM3-202ENST00000424011 KIF27Q86VH2 1401 aa26.01■■□□□ 1.76
CMTM3-202ENST00000424011 POLA1P09884 1462 aaPredicted RBP25.93■■□□□ 1.74
CMTM3-202ENST00000424011 MRC2Q9UBG0 1479 aa25.9■■□□□ 1.74
CMTM3-202ENST00000424011 RAPGEF2Q9Y4G8 1499 aa25.9■■□□□ 1.74
CMTM3-202ENST00000424011 ERICH3Q5RHP9 1530 aa25.9■■□□□ 1.74
CMTM3-202ENST00000424011 PRXQ9BXM0 1461 aa25.89■■□□□ 1.74
CMTM3-202ENST00000424011 ERCC6Q03468 1493 aa25.85■■□□□ 1.73
CMTM3-202ENST00000424011 CUX2O14529 1486 aa25.85■■□□□ 1.73
CMTM3-202ENST00000424011 RAD54L2Q9Y4B4 1467 aa25.85■■□□□ 1.73
CMTM3-202ENST00000424011 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
CMTM3-202ENST00000424011 CLIP1P30622 1438 aa25.76■■□□□ 1.72
CMTM3-202ENST00000424011 WDR62O43379 1518 aa25.76■■□□□ 1.71
CMTM3-202ENST00000424011 IGF1RP08069 1367 aa25.73■■□□□ 1.71
CMTM3-202ENST00000424011 PPARGC1BQ86YN6 1023 aaKnown RBP25.69■■□□□ 1.7
CMTM3-202ENST00000424011 THOC2Q8NI27 1593 aaKnown RBP25.68■■□□□ 1.7
CMTM3-202ENST00000424011 WDR97A6NE52 1622 aa25.66■■□□□ 1.7
CMTM3-202ENST00000424011 TARBP1Q13395 1621 aaKnown RBP25.65■■□□□ 1.7
CMTM3-202ENST00000424011 TDRD9Q8NDG6 1382 aaKnown RBP25.63■■□□□ 1.69
CMTM3-202ENST00000424011 CARMIL1Q5VZK9 1371 aa25.61■■□□□ 1.69
CMTM3-202ENST00000424011 VPS8Q8N3P4 1428 aa25.59■■□□□ 1.69
CMTM3-202ENST00000424011 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
CMTM3-202ENST00000424011 ABCA5Q8WWZ7 1642 aa25.56■■□□□ 1.68
CMTM3-202ENST00000424011 GAPVD1Q14C86 1478 aa25.56■■□□□ 1.68
CMTM3-202ENST00000424011 RANGAP1P46060 587 aaPredicted RBP25.49■■□□□ 1.67
CMTM3-202ENST00000424011 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
CMTM3-202ENST00000424011 CUL7Q14999 1698 aa25.46■■□□□ 1.67
CMTM3-202ENST00000424011 ZNF608Q9ULD9 1512 aaPredicted RBP25.45■■□□□ 1.66
CMTM3-202ENST00000424011 APLP2Q06481 763 aa25.44■■□□□ 1.66
CMTM3-202ENST00000424011 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
CMTM3-202ENST00000424011 GRIN2BQ13224 1484 aa25.37■■□□□ 1.65
CMTM3-202ENST00000424011 ARHGAP35Q9NRY4 1499 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms