RNA–Protein interactions for RNA: ENST00000473066.5

MRPL55-226, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 820 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-226ENST00000473066 NISCHQ9Y2I1 1504 aa38.24■■■■□ 3.71
MRPL55-226ENST00000473066 CCDC180Q9P1Z9 1646 aa34.26■■■■□ 3.07
MRPL55-226ENST00000473066 ABCC9O60706 1549 aa33.63■■■□□ 2.97
MRPL55-226ENST00000473066 RB1CC1Q8TDY2 1594 aa32.32■■■□□ 2.76
MRPL55-226ENST00000473066 NACADO15069 1562 aa32.19■■■□□ 2.74
MRPL55-226ENST00000473066 DCAF8L2P0C7V8 631 aa32.03■■■□□ 2.72
MRPL55-226ENST00000473066 MYO15BQ96JP2 1530 aa31.86■■■□□ 2.69
MRPL55-226ENST00000473066 ZCCHC6Q5VYS8 1495 aaKnown RBP31.82■■■□□ 2.68
MRPL55-226ENST00000473066 DCAF1Q9Y4B6 1507 aa31.65■■■□□ 2.66
MRPL55-226ENST00000473066 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
MRPL55-226ENST00000473066 PABPN1Q86U42 306 aaKnown RBP eCLIP31.29■■■□□ 2.6
MRPL55-226ENST00000473066 BICRAQ9NZM4 1560 aa31.26■■■□□ 2.59
MRPL55-226ENST00000473066 SCRIBQ14160 1630 aa31.19■■■□□ 2.58
MRPL55-226ENST00000473066 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
MRPL55-226ENST00000473066 DNAJC5BQ9UF47 199 aa30.9■■■□□ 2.54
MRPL55-226ENST00000473066 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
MRPL55-226ENST00000473066 CC2D2AQ9P2K1 1620 aa30.44■■■□□ 2.46
MRPL55-226ENST00000473066 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
MRPL55-226ENST00000473066 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
MRPL55-226ENST00000473066 BAZ1AQ9NRL2 1556 aaPredicted RBP29.72■■■□□ 2.35
MRPL55-226ENST00000473066 SMARCA2P51531 1590 aa29.65■■■□□ 2.34
MRPL55-226ENST00000473066 NCAPD3P42695 1498 aa29.61■■■□□ 2.33
MRPL55-226ENST00000473066 ATAD2BQ9ULI0 1458 aa29.61■■■□□ 2.33
MRPL55-226ENST00000473066 HMGXB3Q12766 1538 aa29.54■■■□□ 2.32
MRPL55-226ENST00000473066 PEG3Q9GZU2 1588 aa29.46■■■□□ 2.31
MRPL55-226ENST00000473066 MROH2BQ7Z745 1585 aa29.45■■■□□ 2.31
MRPL55-226ENST00000473066 BAZ1BQ9UIG0 1483 aaKnown RBP29.42■■■□□ 2.3
MRPL55-226ENST00000473066 WIZO95785 1651 aa29.18■■■□□ 2.26
MRPL55-226ENST00000473066 ERCC6Q03468 1493 aa29.08■■■□□ 2.25
MRPL55-226ENST00000473066 NESP48681 1621 aa28.99■■■□□ 2.23
MRPL55-226ENST00000473066 LAMC3Q9Y6N6 1575 aa28.98■■■□□ 2.23
MRPL55-226ENST00000473066 RSF1Q96T23 1441 aaPredicted RBP28.98■■■□□ 2.23
MRPL55-226ENST00000473066 TOP2AP11388 1531 aaKnown RBP28.87■■■□□ 2.21
MRPL55-226ENST00000473066 CUX2O14529 1486 aa28.83■■■□□ 2.21
MRPL55-226ENST00000473066 KIF21AQ7Z4S6 1674 aa28.78■■■□□ 2.2
MRPL55-226ENST00000473066 PDS5BQ9NTI5 1447 aa28.75■■■□□ 2.19
MRPL55-226ENST00000473066 CADPSQ9ULU8 1353 aa28.74■■■□□ 2.19
MRPL55-226ENST00000473066 THOC2Q8NI27 1593 aaKnown RBP28.7■■■□□ 2.18
MRPL55-226ENST00000473066 PRDM2Q13029 1718 aa28.53■■■□□ 2.16
MRPL55-226ENST00000473066 CFTRP13569 1480 aa28.53■■■□□ 2.16
MRPL55-226ENST00000473066 CEP164Q9UPV0 1460 aa28.5■■■□□ 2.15
MRPL55-226ENST00000473066 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
MRPL55-226ENST00000473066 FANCD2Q9BXW9 1451 aa28.46■■■□□ 2.15
MRPL55-226ENST00000473066 CCDC88BA6NC98 1476 aa28.44■■■□□ 2.14
MRPL55-226ENST00000473066 WDR62O43379 1518 aa28.39■■■□□ 2.14
MRPL55-226ENST00000473066 URB2Q14146 1524 aaKnown RBP28.17■■■□□ 2.1
MRPL55-226ENST00000473066 DNAJC5Q9H3Z4 198 aa28.1■■■□□ 2.09
MRPL55-226ENST00000473066 SUPT5HO00267 1087 aaKnown RBP28.09■■■□□ 2.09
MRPL55-226ENST00000473066 ABCC8Q09428 1581 aa28■■■□□ 2.07
MRPL55-226ENST00000473066 TOPBP1Q92547 1522 aa27.98■■■□□ 2.07
MRPL55-226ENST00000473066 DNMBPQ6XZF7 1577 aa27.98■■■□□ 2.07
MRPL55-226ENST00000473066 IFT140Q96RY7 1462 aa27.88■■■□□ 2.05
MRPL55-226ENST00000473066 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
MRPL55-226ENST00000473066 ZNF608Q9ULD9 1512 aaPredicted RBP27.72■■■□□ 2.03
MRPL55-226ENST00000473066 POLA1P09884 1462 aaPredicted RBP27.71■■■□□ 2.03
MRPL55-226ENST00000473066 TARBP1Q13395 1621 aaKnown RBP27.7■■■□□ 2.03
MRPL55-226ENST00000473066 CUX1P39880 1505 aa27.67■■■□□ 2.02
MRPL55-226ENST00000473066 FGD5Q6ZNL6 1462 aa27.64■■■□□ 2.01
MRPL55-226ENST00000473066 SOGA1O94964 1423 aa27.57■■■□□ 2
MRPL55-226ENST00000473066 RAD54L2Q9Y4B4 1467 aa27.57■■■□□ 2
MRPL55-226ENST00000473066 WDR97A6NE52 1622 aa27.55■■■□□ 2
MRPL55-226ENST00000473066 AQRO60306 1485 aaKnown RBP eCLIP27.51■■■□□ 26e-9■■■■■ 28.1
MRPL55-226ENST00000473066 OSCARQ8IYS5 282 aa27.5■■□□□ 1.99
MRPL55-226ENST00000473066 CHD1O14646 1710 aa27.47■■□□□ 1.99
MRPL55-226ENST00000473066 BIVM-ERCC5R4GMW8 1640 aa27.44■■□□□ 1.98
MRPL55-226ENST00000473066 TDRD9Q8NDG6 1382 aaKnown RBP27.43■■□□□ 1.98
MRPL55-226ENST00000473066 TOP2BQ02880 1626 aa27.41■■□□□ 1.98
MRPL55-226ENST00000473066 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
MRPL55-226ENST00000473066 PBRM1Q86U86 1689 aa27.38■■□□□ 1.97
MRPL55-226ENST00000473066 SYNJ1O43426 1573 aa27.36■■□□□ 1.97
MRPL55-226ENST00000473066 ABCA10Q8WWZ4 1543 aa27.34■■□□□ 1.97
MRPL55-226ENST00000473066 GRIN2BQ13224 1484 aa27.33■■□□□ 1.97
MRPL55-226ENST00000473066 SNAPC4Q5SXM2 1469 aa27.33■■□□□ 1.97
MRPL55-226ENST00000473066 ABCA5Q8WWZ7 1642 aa27.3■■□□□ 1.96
MRPL55-226ENST00000473066 MAGI1Q96QZ7 1491 aaPredicted RBP27.3■■□□□ 1.96
MRPL55-226ENST00000473066 FBLN2P98095 1184 aa27.29■■□□□ 1.96
MRPL55-226ENST00000473066 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
MRPL55-226ENST00000473066 RIMBP3CA6NJZ7 1639 aa27.19■■□□□ 1.94
MRPL55-226ENST00000473066 RIMBP3BA6NNM3 1639 aa27.19■■□□□ 1.94
MRPL55-226ENST00000473066 RIMBP3Q9UFD9 1639 aa27.19■■□□□ 1.94
MRPL55-226ENST00000473066 SYNJ2O15056 1496 aa27.18■■□□□ 1.94
MRPL55-226ENST00000473066 CHMP7Q8WUX9 453 aaPredicted RBP27.16■■□□□ 1.94
MRPL55-226ENST00000473066 TRIM41Q8WV44 630 aa27.16■■□□□ 1.94
MRPL55-226ENST00000473066 ARHGEF11O15085 1522 aa27.13■■□□□ 1.93
MRPL55-226ENST00000473066 ADAMTS12P58397 1594 aa27.08■■□□□ 1.93
MRPL55-226ENST00000473066 CLASP1Q7Z460 1538 aa27.06■■□□□ 1.92
MRPL55-226ENST00000473066 ERICH3Q5RHP9 1530 aa27.04■■□□□ 1.92
MRPL55-226ENST00000473066 GRIN2AQ12879 1464 aa26.98■■□□□ 1.91
MRPL55-226ENST00000473066 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
MRPL55-226ENST00000473066 ARAP1Q96P48 1450 aa26.87■■□□□ 1.89
MRPL55-226ENST00000473066 KIF27Q86VH2 1401 aa26.87■■□□□ 1.89
MRPL55-226ENST00000473066 CEP170Q5SW79 1584 aa26.86■■□□□ 1.89
MRPL55-226ENST00000473066 CUL7Q14999 1698 aa26.82■■□□□ 1.88
MRPL55-226ENST00000473066 NUP160Q12769 1436 aa26.82■■□□□ 1.88
MRPL55-226ENST00000473066 CYB5RLQ6IPT4 315 aa26.82■■□□□ 1.88
MRPL55-226ENST00000473066 SHROOM2Q13796 1616 aa26.72■■□□□ 1.87
MRPL55-226ENST00000473066 RUSC2Q8N2Y8 1516 aa26.69■■□□□ 1.86
MRPL55-226ENST00000473066 IGF1RP08069 1367 aa26.67■■□□□ 1.86
MRPL55-226ENST00000473066 ERCC6L2Q5T890 1561 aa26.62■■□□□ 1.85
MRPL55-226ENST00000473066 CARMIL1Q5VZK9 1371 aa26.58■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms