RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 NISCHQ9Y2I1 1504 aa36.41■■■■□ 3.42
CMTM3-213ENST00000566756 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.68
CMTM3-213ENST00000566756 ZCCHC6Q5VYS8 1495 aaKnown RBP30.62■■■□□ 2.49
CMTM3-213ENST00000566756 DCAF1Q9Y4B6 1507 aa30.18■■■□□ 2.42
CMTM3-213ENST00000566756 DCAF8L2P0C7V8 631 aa29.88■■■□□ 2.37
CMTM3-213ENST00000566756 MYO15BQ96JP2 1530 aa29.8■■■□□ 2.36
CMTM3-213ENST00000566756 ABCC9O60706 1549 aa29.77■■■□□ 2.36
CMTM3-213ENST00000566756 SHROOM4Q9ULL8 1493 aa29.63■■■□□ 2.33
CMTM3-213ENST00000566756 NACADO15069 1562 aa29.53■■■□□ 2.32
CMTM3-213ENST00000566756 RB1CC1Q8TDY2 1594 aa29.22■■■□□ 2.27
CMTM3-213ENST00000566756 SCRIBQ14160 1630 aa29.09■■■□□ 2.25
CMTM3-213ENST00000566756 SUPT5HO00267 1087 aaKnown RBP28.73■■■□□ 2.19
CMTM3-213ENST00000566756 UNC13AQ9UPW8 1703 aa28.67■■■□□ 2.18
CMTM3-213ENST00000566756 BICRAQ9NZM4 1560 aa28.34■■■□□ 2.13
CMTM3-213ENST00000566756 RSF1Q96T23 1441 aaPredicted RBP28.27■■■□□ 2.12
CMTM3-213ENST00000566756 CECR2Q9BXF3 1484 aa28.23■■■□□ 2.11
CMTM3-213ENST00000566756 CHIC1Q5VXU3 224 aa28.17■■■□□ 2.1
CMTM3-213ENST00000566756 BAZ1AQ9NRL2 1556 aaPredicted RBP28.12■■■□□ 2.09
CMTM3-213ENST00000566756 MROH2BQ7Z745 1585 aa28.11■■■□□ 2.09
CMTM3-213ENST00000566756 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
CMTM3-213ENST00000566756 SMARCA4P51532 1647 aa27.97■■■□□ 2.07
CMTM3-213ENST00000566756 WIZO95785 1651 aa27.89■■■□□ 2.06
CMTM3-213ENST00000566756 PEG3Q9GZU2 1588 aa27.68■■■□□ 2.02
CMTM3-213ENST00000566756 TOP2AP11388 1531 aaKnown RBP27.62■■■□□ 2.01
CMTM3-213ENST00000566756 SMARCA2P51531 1590 aa27.48■■□□□ 1.99
CMTM3-213ENST00000566756 ATAD2BQ9ULI0 1458 aa27.46■■□□□ 1.99
CMTM3-213ENST00000566756 EIF4G1Q04637 1599 aaKnown RBP27.45■■□□□ 1.99
CMTM3-213ENST00000566756 HRCP23327 699 aa27.37■■□□□ 1.97
CMTM3-213ENST00000566756 CCDC88BA6NC98 1476 aa27.32■■□□□ 1.96
CMTM3-213ENST00000566756 BAZ1BQ9UIG0 1483 aaKnown RBP27.29■■□□□ 1.96
CMTM3-213ENST00000566756 NCAPD3P42695 1498 aa27.24■■□□□ 1.95
CMTM3-213ENST00000566756 HMGXB3Q12766 1538 aa27.22■■□□□ 1.95
CMTM3-213ENST00000566756 PCGF6Q9BYE7 350 aa27.13■■□□□ 1.93
CMTM3-213ENST00000566756 LOC105371045A0A1W2PR82 267 aa27.11■■□□□ 1.93
CMTM3-213ENST00000566756 CC2D2AQ9P2K1 1620 aa27.01■■□□□ 1.91
CMTM3-213ENST00000566756 TRIM41Q8WV44 630 aa26.93■■□□□ 1.9
CMTM3-213ENST00000566756 TRIM26Q12899 539 aaPredicted RBP26.87■■□□□ 1.89
CMTM3-213ENST00000566756 ABCC8Q09428 1581 aa26.75■■□□□ 1.87
CMTM3-213ENST00000566756 CFTRP13569 1480 aa26.65■■□□□ 1.86
CMTM3-213ENST00000566756 PRDM2Q13029 1718 aa26.61■■□□□ 1.85
CMTM3-213ENST00000566756 WRNQ14191 1432 aaPredicted RBP eCLIP26.6■■□□□ 1.85
CMTM3-213ENST00000566756 CADPSQ9ULU8 1353 aa26.51■■□□□ 1.83
CMTM3-213ENST00000566756 SYNJ1O43426 1573 aa26.49■■□□□ 1.83
CMTM3-213ENST00000566756 PPARGC1BQ86YN6 1023 aaKnown RBP26.46■■□□□ 1.83
CMTM3-213ENST00000566756 FAM9AQ8IZU1 332 aaPredicted RBP26.45■■□□□ 1.82
CMTM3-213ENST00000566756 ZEB1P37275 1124 aaPredicted RBP26.44■■□□□ 1.82
CMTM3-213ENST00000566756 TOP2BQ02880 1626 aa26.42■■□□□ 1.82
CMTM3-213ENST00000566756 BIVM-ERCC5R4GMW8 1640 aa26.41■■□□□ 1.82
CMTM3-213ENST00000566756 EEA1Q15075 1411 aa26.34■■□□□ 1.81
CMTM3-213ENST00000566756 LAMC3Q9Y6N6 1575 aa26.3■■□□□ 1.8
CMTM3-213ENST00000566756 SOGA1O94964 1423 aa26.27■■□□□ 1.8
CMTM3-213ENST00000566756 CUX1P39880 1505 aa26.27■■□□□ 1.8
CMTM3-213ENST00000566756 FANCD2Q9BXW9 1451 aa26.21■■□□□ 1.79
CMTM3-213ENST00000566756 NESP48681 1621 aa26.19■■□□□ 1.78
CMTM3-213ENST00000566756 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
CMTM3-213ENST00000566756 RUSC2Q8N2Y8 1516 aa26.17■■□□□ 1.78
CMTM3-213ENST00000566756 CSRNP3Q8WYN3 585 aa26.13■■□□□ 1.77
CMTM3-213ENST00000566756 PDS5BQ9NTI5 1447 aa26.06■■□□□ 1.76
CMTM3-213ENST00000566756 CEP164Q9UPV0 1460 aa26.03■■□□□ 1.76
CMTM3-213ENST00000566756 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
CMTM3-213ENST00000566756 EHMT2Q96KQ7 1210 aa26■■□□□ 1.75
CMTM3-213ENST00000566756 KIF21BO75037 1637 aa25.99■■□□□ 1.75
CMTM3-213ENST00000566756 TNIKQ9UKE5 1360 aa25.97■■□□□ 1.75
CMTM3-213ENST00000566756 FGD5Q6ZNL6 1462 aa25.96■■□□□ 1.75
CMTM3-213ENST00000566756 TOPBP1Q92547 1522 aa25.95■■□□□ 1.74
CMTM3-213ENST00000566756 GOLGA3Q08378 1498 aa25.94■■□□□ 1.74
CMTM3-213ENST00000566756 KIF21AQ7Z4S6 1674 aa25.94■■□□□ 1.74
CMTM3-213ENST00000566756 KIF27Q86VH2 1401 aa25.93■■□□□ 1.74
CMTM3-213ENST00000566756 CEP162Q5TB80 1403 aa25.9■■□□□ 1.74
CMTM3-213ENST00000566756 URB2Q14146 1524 aaKnown RBP25.87■■□□□ 1.73
CMTM3-213ENST00000566756 POLA1P09884 1462 aaPredicted RBP25.83■■□□□ 1.72
CMTM3-213ENST00000566756 PRXQ9BXM0 1461 aa25.8■■□□□ 1.72
CMTM3-213ENST00000566756 CUX2O14529 1486 aa25.8■■□□□ 1.72
CMTM3-213ENST00000566756 ERICH3Q5RHP9 1530 aa25.79■■□□□ 1.72
CMTM3-213ENST00000566756 ABCA10Q8WWZ4 1543 aa25.77■■□□□ 1.72
CMTM3-213ENST00000566756 RAPGEF2Q9Y4G8 1499 aa25.75■■□□□ 1.71
CMTM3-213ENST00000566756 UBTFP17480 764 aaKnown RBP25.75■■□□□ 1.71
CMTM3-213ENST00000566756 WDR97A6NE52 1622 aa25.71■■□□□ 1.71
CMTM3-213ENST00000566756 MRC2Q9UBG0 1479 aa25.7■■□□□ 1.71
CMTM3-213ENST00000566756 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.71
CMTM3-213ENST00000566756 IGF1RP08069 1367 aa25.67■■□□□ 1.7
CMTM3-213ENST00000566756 WDR62O43379 1518 aa25.59■■□□□ 1.69
CMTM3-213ENST00000566756 TARBP1Q13395 1621 aaKnown RBP25.58■■□□□ 1.69
CMTM3-213ENST00000566756 CCER1Q8TC90 406 aaPredicted RBP25.58■■□□□ 1.69
CMTM3-213ENST00000566756 ABCA5Q8WWZ7 1642 aa25.56■■□□□ 1.68
CMTM3-213ENST00000566756 CARMIL1Q5VZK9 1371 aa25.54■■□□□ 1.68
CMTM3-213ENST00000566756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.53■■□□□ 1.68
CMTM3-213ENST00000566756 CUL7Q14999 1698 aa25.52■■□□□ 1.68
CMTM3-213ENST00000566756 ERCC6Q03468 1493 aa25.52■■□□□ 1.68
CMTM3-213ENST00000566756 CLIP1P30622 1438 aa25.5■■□□□ 1.67
CMTM3-213ENST00000566756 THOC2Q8NI27 1593 aaKnown RBP25.48■■□□□ 1.67
CMTM3-213ENST00000566756 GAPVD1Q14C86 1478 aa25.46■■□□□ 1.67
CMTM3-213ENST00000566756 TDRD9Q8NDG6 1382 aaKnown RBP25.44■■□□□ 1.66
CMTM3-213ENST00000566756 IFT140Q96RY7 1462 aa25.42■■□□□ 1.66
CMTM3-213ENST00000566756 VPS8Q8N3P4 1428 aa25.39■■□□□ 1.66
CMTM3-213ENST00000566756 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
CMTM3-213ENST00000566756 CTTNBP2Q8WZ74 1663 aa25.26■■□□□ 1.63
CMTM3-213ENST00000566756 AQRO60306 1485 aaKnown RBP eCLIP25.26■■□□□ 1.63
CMTM3-213ENST00000566756 GRIN2BQ13224 1484 aa25.26■■□□□ 1.63
CMTM3-213ENST00000566756 ARAP1Q96P48 1450 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms