RNA–Protein interactions for RNA: ENST00000460097.5

CMTM3-203, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2 BASIC

Gene CMTM3, Length 1,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-203ENST00000460097 NISCHQ9Y2I1 1504 aa35.76■■■■□ 3.32
CMTM3-203ENST00000460097 CCDC180Q9P1Z9 1646 aa31.62■■■□□ 2.65
CMTM3-203ENST00000460097 ABCC9O60706 1549 aa30.78■■■□□ 2.52
CMTM3-203ENST00000460097 DCAF8L2P0C7V8 631 aa29.91■■■□□ 2.38
CMTM3-203ENST00000460097 ZCCHC6Q5VYS8 1495 aaKnown RBP29.82■■■□□ 2.36
CMTM3-203ENST00000460097 NACADO15069 1562 aa29.72■■■□□ 2.35
CMTM3-203ENST00000460097 RB1CC1Q8TDY2 1594 aa29.69■■■□□ 2.34
CMTM3-203ENST00000460097 MYO15BQ96JP2 1530 aa29.62■■■□□ 2.33
CMTM3-203ENST00000460097 DCAF1Q9Y4B6 1507 aa29.59■■■□□ 2.33
CMTM3-203ENST00000460097 UNC13AQ9UPW8 1703 aa28.96■■■□□ 2.23
CMTM3-203ENST00000460097 SCRIBQ14160 1630 aa28.91■■■□□ 2.22
CMTM3-203ENST00000460097 PABPN1Q86U42 306 aaKnown RBP eCLIP28.87■■■□□ 2.21
CMTM3-203ENST00000460097 BICRAQ9NZM4 1560 aa28.75■■■□□ 2.19
CMTM3-203ENST00000460097 SHROOM4Q9ULL8 1493 aa28.48■■■□□ 2.15
CMTM3-203ENST00000460097 DNAJC5BQ9UF47 199 aa28.06■■■□□ 2.08
CMTM3-203ENST00000460097 EIF4G1Q04637 1599 aaKnown RBP27.99■■■□□ 2.07
CMTM3-203ENST00000460097 CECR2Q9BXF3 1484 aa27.85■■■□□ 2.05
CMTM3-203ENST00000460097 CC2D2AQ9P2K1 1620 aa27.82■■■□□ 2.04
CMTM3-203ENST00000460097 BAZ1AQ9NRL2 1556 aaPredicted RBP27.7■■■□□ 2.02
CMTM3-203ENST00000460097 SMARCA4P51532 1647 aa27.66■■■□□ 2.02
CMTM3-203ENST00000460097 MROH2BQ7Z745 1585 aa27.57■■■□□ 2
CMTM3-203ENST00000460097 ATAD2BQ9ULI0 1458 aa27.49■■□□□ 1.99
CMTM3-203ENST00000460097 SMARCA2P51531 1590 aa27.46■■□□□ 1.99
CMTM3-203ENST00000460097 NCAPD3P42695 1498 aa27.44■■□□□ 1.98
CMTM3-203ENST00000460097 PEG3Q9GZU2 1588 aa27.39■■□□□ 1.97
CMTM3-203ENST00000460097 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
CMTM3-203ENST00000460097 HMGXB3Q12766 1538 aa27.28■■□□□ 1.96
CMTM3-203ENST00000460097 BAZ1BQ9UIG0 1483 aaKnown RBP27.28■■□□□ 1.96
CMTM3-203ENST00000460097 WIZO95785 1651 aa27.27■■□□□ 1.96
CMTM3-203ENST00000460097 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
CMTM3-203ENST00000460097 SUPT5HO00267 1087 aaKnown RBP26.94■■□□□ 1.9
CMTM3-203ENST00000460097 CCDC88BA6NC98 1476 aa26.71■■□□□ 1.87
CMTM3-203ENST00000460097 NESP48681 1621 aa26.7■■□□□ 1.86
CMTM3-203ENST00000460097 CADPSQ9ULU8 1353 aa26.68■■□□□ 1.86
CMTM3-203ENST00000460097 LAMC3Q9Y6N6 1575 aa26.65■■□□□ 1.86
CMTM3-203ENST00000460097 CFTRP13569 1480 aa26.55■■□□□ 1.84
CMTM3-203ENST00000460097 ERCC6Q03468 1493 aa26.53■■□□□ 1.84
CMTM3-203ENST00000460097 PDS5BQ9NTI5 1447 aa26.52■■□□□ 1.84
CMTM3-203ENST00000460097 FANCD2Q9BXW9 1451 aa26.35■■□□□ 1.81
CMTM3-203ENST00000460097 KIF21AQ7Z4S6 1674 aa26.33■■□□□ 1.81
CMTM3-203ENST00000460097 CEP164Q9UPV0 1460 aa26.28■■□□□ 1.8
CMTM3-203ENST00000460097 PRDM2Q13029 1718 aa26.28■■□□□ 1.8
CMTM3-203ENST00000460097 MRC2Q9UBG0 1479 aa26.18■■□□□ 1.78
CMTM3-203ENST00000460097 THOC2Q8NI27 1593 aaKnown RBP26.18■■□□□ 1.78
CMTM3-203ENST00000460097 CUX2O14529 1486 aa26.12■■□□□ 1.77
CMTM3-203ENST00000460097 WDR62O43379 1518 aa26.07■■□□□ 1.76
CMTM3-203ENST00000460097 URB2Q14146 1524 aaKnown RBP26.05■■□□□ 1.76
CMTM3-203ENST00000460097 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
CMTM3-203ENST00000460097 HRCP23327 699 aa25.98■■□□□ 1.75
CMTM3-203ENST00000460097 TOPBP1Q92547 1522 aa25.95■■□□□ 1.74
CMTM3-203ENST00000460097 DNMBPQ6XZF7 1577 aa25.92■■□□□ 1.74
CMTM3-203ENST00000460097 CUX1P39880 1505 aa25.84■■□□□ 1.73
CMTM3-203ENST00000460097 WRNQ14191 1432 aaPredicted RBP eCLIP25.8■■□□□ 1.72
CMTM3-203ENST00000460097 POLA1P09884 1462 aaPredicted RBP25.74■■□□□ 1.71
CMTM3-203ENST00000460097 IFT140Q96RY7 1462 aa25.73■■□□□ 1.71
CMTM3-203ENST00000460097 FGD5Q6ZNL6 1462 aa25.72■■□□□ 1.71
CMTM3-203ENST00000460097 SOGA1O94964 1423 aa25.7■■□□□ 1.7
CMTM3-203ENST00000460097 SYNJ1O43426 1573 aa25.67■■□□□ 1.7
CMTM3-203ENST00000460097 TOP2BQ02880 1626 aa25.67■■□□□ 1.7
CMTM3-203ENST00000460097 RAD54L2Q9Y4B4 1467 aa25.65■■□□□ 1.7
CMTM3-203ENST00000460097 BIVM-ERCC5R4GMW8 1640 aa25.64■■□□□ 1.7
CMTM3-203ENST00000460097 CHIC1Q5VXU3 224 aa25.64■■□□□ 1.69
CMTM3-203ENST00000460097 TARBP1Q13395 1621 aaKnown RBP25.62■■□□□ 1.69
CMTM3-203ENST00000460097 ZNF608Q9ULD9 1512 aaPredicted RBP25.59■■□□□ 1.69
CMTM3-203ENST00000460097 TDRD9Q8NDG6 1382 aaKnown RBP25.52■■□□□ 1.68
CMTM3-203ENST00000460097 AQRO60306 1485 aaKnown RBP eCLIP25.51■■□□□ 1.67
CMTM3-203ENST00000460097 ABCA10Q8WWZ4 1543 aa25.49■■□□□ 1.67
CMTM3-203ENST00000460097 EIF4G3O43432 1585 aaKnown RBP25.46■■□□□ 1.67
CMTM3-203ENST00000460097 TRIM41Q8WV44 630 aa25.44■■□□□ 1.66
CMTM3-203ENST00000460097 WDR97A6NE52 1622 aa25.42■■□□□ 1.66
CMTM3-203ENST00000460097 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
CMTM3-203ENST00000460097 GRIN2BQ13224 1484 aa25.33■■□□□ 1.65
CMTM3-203ENST00000460097 ABCA5Q8WWZ7 1642 aa25.32■■□□□ 1.64
CMTM3-203ENST00000460097 PCGF6Q9BYE7 350 aa25.27■■□□□ 1.64
CMTM3-203ENST00000460097 KIF27Q86VH2 1401 aa25.25■■□□□ 1.63
CMTM3-203ENST00000460097 SNAPC4Q5SXM2 1469 aa25.25■■□□□ 1.63
CMTM3-203ENST00000460097 PBRM1Q86U86 1689 aa25.23■■□□□ 1.63
CMTM3-203ENST00000460097 MAGI1Q96QZ7 1491 aaPredicted RBP25.22■■□□□ 1.63
CMTM3-203ENST00000460097 FBLN2P98095 1184 aa25.21■■□□□ 1.63
CMTM3-203ENST00000460097 CHMP7Q8WUX9 453 aaPredicted RBP25.18■■□□□ 1.62
CMTM3-203ENST00000460097 ERICH3Q5RHP9 1530 aa25.18■■□□□ 1.62
CMTM3-203ENST00000460097 OSCARQ8IYS5 282 aa25.18■■□□□ 1.62
CMTM3-203ENST00000460097 IGF1RP08069 1367 aa25.14■■□□□ 1.61
CMTM3-203ENST00000460097 SYNJ2O15056 1496 aa25.13■■□□□ 1.61
CMTM3-203ENST00000460097 DNAJC5Q9H3Z4 198 aa25.1■■□□□ 1.61
CMTM3-203ENST00000460097 RUSC2Q8N2Y8 1516 aa25.09■■□□□ 1.61
CMTM3-203ENST00000460097 FHAD1B1AJZ9 1412 aa25.09■■□□□ 1.61
CMTM3-203ENST00000460097 CHD1O14646 1710 aa25.08■■□□□ 1.6
CMTM3-203ENST00000460097 ADAMTS12P58397 1594 aa25.06■■□□□ 1.6
CMTM3-203ENST00000460097 GRIN2AQ12879 1464 aa24.99■■□□□ 1.59
CMTM3-203ENST00000460097 CARMIL1Q5VZK9 1371 aa24.99■■□□□ 1.59
CMTM3-203ENST00000460097 CUL7Q14999 1698 aa24.98■■□□□ 1.59
CMTM3-203ENST00000460097 PPARGC1BQ86YN6 1023 aaKnown RBP24.95■■□□□ 1.58
CMTM3-203ENST00000460097 EEA1Q15075 1411 aa24.93■■□□□ 1.58
CMTM3-203ENST00000460097 TRIM26Q12899 539 aaPredicted RBP24.93■■□□□ 1.58
CMTM3-203ENST00000460097 CSRNP3Q8WYN3 585 aa24.93■■□□□ 1.58
CMTM3-203ENST00000460097 PELP1Q8IZL8 1130 aaKnown RBP24.9■■□□□ 1.58
CMTM3-203ENST00000460097 FAM9AQ8IZU1 332 aaPredicted RBP24.9■■□□□ 1.58
CMTM3-203ENST00000460097 NUP160Q12769 1436 aa24.87■■□□□ 1.57
CMTM3-203ENST00000460097 ZEB1P37275 1124 aaPredicted RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms