Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.23■□□□□ 0.834e-6■■□□□ 12.9
RPS3P23396 CLN3-230ENST00000568076 1968 ntTSL 520.05■□□□□ 0.84e-6■■□□□ 12.9
RPS3P23396 CLN3-219ENST00000565778 688 ntTSL 1 (best)20.01■□□□□ 0.794e-6■■□□□ 12.9
RPS3P23396 CLN3-250ENST00000636839 2018 ntTSL 519.88■□□□□ 0.774e-6■■□□□ 12.9
RPS3P23396 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.744e-6■■□□□ 12.9
RPS3P23396 CLN3-225ENST00000566824 1326 ntTSL 519.14■□□□□ 0.654e-6■■□□□ 12.9
RPS3P23396 CLN3-233ENST00000568452 1616 ntTSL 518.89■□□□□ 0.614e-6■■□□□ 12.9
RPS3P23396 CLN3-258ENST00000637184 1753 ntTSL 518.85■□□□□ 0.614e-6■■□□□ 12.9
RPS3P23396 CLN3-260ENST00000637578 1577 ntTSL 218.66■□□□□ 0.584e-6■■□□□ 12.9
RPS3P23396 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.53■□□□□ 0.564e-6■■□□□ 12.9
RPS3P23396 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.44■□□□□ 0.544e-6■■□□□ 12.9
RPS3P23396 CLN3-262ENST00000637699 1228 ntTSL 218.38■□□□□ 0.534e-6■■□□□ 12.9
RPS3P23396 CLN3-263ENST00000637871 1606 ntTSL 518.22■□□□□ 0.514e-6■■□□□ 12.9
RPS3P23396 CLN3-227ENST00000567495 769 ntTSL 518.17■□□□□ 0.54e-6■■□□□ 12.9
RPS3P23396 CLN3-218ENST00000565688 650 ntTSL 317.97■□□□□ 0.474e-6■■□□□ 12.9
RPS3P23396 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.79■□□□□ 0.444e-6■■□□□ 12.9
RPS3P23396 CLN3-237ENST00000569030 1109 ntTSL 217.79■□□□□ 0.444e-6■■□□□ 12.9
RPS3P23396 CLN3-221ENST00000566057 931 ntTSL 1 (best)17.79■□□□□ 0.444e-6■■□□□ 12.9
RPS3P23396 CLN3-214ENST00000565140 1225 ntTSL 217.79■□□□□ 0.444e-6■■□□□ 12.9
RPS3P23396 AC138894.1-211ENST00000636766 2061 ntTSL 517.73■□□□□ 0.434e-6■■□□□ 12.9
RPS3P23396 CLN3-243ENST00000635973 1084 ntTSL 517.71■□□□□ 0.434e-6■■□□□ 12.9
RPS3P23396 CLN3-239ENST00000628023 1183 ntTSL 517.71■□□□□ 0.434e-6■■□□□ 12.9
RPS3P23396 CLN3-241ENST00000635861 1404 ntTSL 517.69■□□□□ 0.424e-6■■□□□ 12.9
RPS3P23396 AC138894.1-209ENST00000637299 1954 ntTSL 517.06■□□□□ 0.324e-6■■□□□ 12.9
RPS3P23396 CLN3-256ENST00000637107 1946 ntTSL 516.9■□□□□ 0.34e-6■■□□□ 12.9
RPS3P23396 AC138894.1-208ENST00000636017 2223 ntTSL 516.74■□□□□ 0.274e-6■■□□□ 12.9
RPS3P23396 AC138894.1-207ENST00000636866 2452 ntTSL 516.62■□□□□ 0.254e-6■■□□□ 12.9
RPS3P23396 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.58■□□□□ 0.244e-6■■□□□ 12.9
RPS3P23396 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.42■□□□□ 0.224e-6■■□□□ 12.9
RPS3P23396 AC138894.1-202ENST00000637376 2512 ntTSL 516.34■□□□□ 0.214e-6■■□□□ 12.9
RPS3P23396 CLN3-231ENST00000568422 1168 ntTSL 516.14■□□□□ 0.174e-6■■□□□ 12.9
RPS3P23396 AC138894.1-203ENST00000636078 2382 ntTSL 515.69■□□□□ 0.14e-6■■□□□ 12.9
RPS3P23396 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.67■□□□□ 0.14e-6■■□□□ 12.9
RPS3P23396 CLN3-251ENST00000636853 2289 ntTSL 515.46■□□□□ 0.064e-6■■□□□ 12.9
RPS3P23396 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.43■□□□□ 0.064e-6■■□□□ 12.9
RPS3P23396 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.41■□□□□ 0.064e-6■■□□□ 12.9
RPS3P23396 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.39■□□□□ 0.054e-6■■□□□ 12.9
RPS3P23396 AC138894.1-204ENST00000636503 2521 ntTSL 515.36■□□□□ 0.054e-6■■□□□ 12.9
RPS3P23396 CLN3-253ENST00000636977 2969 ntTSL 514.54□□□□□ -0.084e-6■■□□□ 12.9
RPS3P23396 CLN3-213ENST00000565047 461 ntTSL 1 (best)14.37□□□□□ -0.114e-6■■□□□ 12.9
RPS3P23396 CLN3-222ENST00000566083 1409 ntTSL 214.34□□□□□ -0.114e-6■■□□□ 12.9
RPS3P23396 CLN3-236ENST00000568558 634 ntTSL 514.27□□□□□ -0.134e-6■■□□□ 12.9
RPS3P23396 CLN3-242ENST00000635958 1837 ntTSL 513.99□□□□□ -0.174e-6■■□□□ 12.9
RPS3P23396 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.94□□□□□ -0.184e-6■■□□□ 12.9
RPS3P23396 CLN3-235ENST00000568497 758 ntTSL 313.43□□□□□ -0.264e-6■■□□□ 12.9
RPS3P23396 CLN3-210ENST00000563874 3081 ntTSL 212.8□□□□□ -0.364e-6■■□□□ 12.9
RPS3P23396 CLN3-238ENST00000569430 3867 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.644e-6■■□□□ 12.9
RPS3P23396 CLN3-244ENST00000636147 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.694e-6■■□□□ 12.9
RPS3P23396 CD81-203ENST00000464784 794 ntTSL 520.81■□□□□ 0.924e-7■■□□□ 12.9
RPS3P23396 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.12■□□□□ 0.494e-7■■□□□ 12.9
RPS3P23396 CD81-213ENST00000527343 720 ntTSL 316.91■□□□□ 0.34e-7■■□□□ 12.9
RPS3P23396 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.91■□□□□ 0.144e-7■■□□□ 12.9
RPS3P23396 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.014e-7■■□□□ 12.9
RPS3P23396 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.82□□□□□ -0.24e-7■■□□□ 12.9
RPS3P23396 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.732e-8■■□□□ 12.9
RPS3P23396 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.132e-8■■□□□ 12.9
RPS3P23396 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.822e-8■■□□□ 12.9
RPS3P23396 HNRNPA3-203ENST00000432457 643 ntTSL 39.73□□□□□ -0.852e-8■■□□□ 12.9
RPS3P23396 HM13-222ENST00000494153 757 ntTSL 513.05□□□□□ -0.325e-11■■□□□ 12.9
RPS3P23396 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.749e-10■■□□□ 12.9
RPS3P23396 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.42■□□□□ 0.79e-10■■□□□ 12.9
RPS3P23396 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.98■□□□□ 0.791e-7■■□□□ 12.9
RPS3P23396 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.67■□□□□ 0.11e-7■■□□□ 12.9
RPS3P23396 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.021e-7■■□□□ 12.9
RPS3P23396 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.521e-7■■□□□ 12.9
RPS3P23396 PYCR1-205ENST00000405481 841 ntTSL 214.68□□□□□ -0.065e-8■■□□□ 12.9
RPS3P23396 COL9A3-213ENST00000489045 838 ntTSL 522.19■■□□□ 1.144e-12■■□□□ 12.8
RPS3P23396 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.072e-9■■□□□ 12.8
RPS3P23396 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.032e-9■■□□□ 12.8
RPS3P23396 EIF3E-207ENST00000519413 419 ntTSL 30.06□□□□□ -2.45e-23■■□□□ 12.8
RPS3P23396 FUS-204ENST00000483853 778 ntTSL 220.2■□□□□ 0.823e-19■■□□□ 12.8
RPS3P23396 COL18A1-206ENST00000459895 588 ntTSL 312.58□□□□□ -0.47e-12■■□□□ 12.8
RPS3P23396 NOTUM-203ENST00000477214 813 ntTSL 522.88■■□□□ 1.251e-14■■□□□ 12.8
RPS3P23396 ATP6AP1-208ENST00000484908 566 ntTSL 217.22■□□□□ 0.351e-7■■□□□ 12.8
RPS3P23396 SNRPE-206ENST00000483099 967 ntTSL 218.61■□□□□ 0.572e-6■■□□□ 12.8
RPS3P23396 SNRPE-202ENST00000414487 942 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.942e-6■■□□□ 12.8
RPS3P23396 SNRPE-205ENST00000475035 532 ntTSL 1 (best)8.36□□□□□ -1.072e-6■■□□□ 12.8
RPS3P23396 SNRPE-204ENST00000470492 478 ntTSL 35.27□□□□□ -1.572e-6■■□□□ 12.8
RPS3P23396 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.64e-8■■□□□ 12.8
RPS3P23396 ACTN1-219ENST00000556432 558 ntTSL 1 (best)13.04□□□□□ -0.322e-11■■□□□ 12.8
RPS3P23396 PTK7-211ENST00000473339 870 ntTSL 315.68■□□□□ 0.13e-7■■□□□ 12.8
RPS3P23396 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.111e-8■■□□□ 12.8
RPS3P23396 SRP14-208ENST00000560773 468 ntTSL 3 BASIC12.41□□□□□ -0.421e-8■■□□□ 12.8
RPS3P23396 SRP14-203ENST00000558527 791 ntTSL 212.15□□□□□ -0.461e-8■■□□□ 12.8
RPS3P23396 CTNNA1-226ENST00000521368 544 ntTSL 413.54□□□□□ -0.247e-8■■□□□ 12.8
RPS3P23396 CTNNA1-216ENST00000519489 358 ntTSL 25.79□□□□□ -1.487e-8■■□□□ 12.8
RPS3P23396 ERGIC3-209ENST00000447986 1632 ntTSL 1 (best)12.84□□□□□ -0.353e-7■■□□□ 12.8
RPS3P23396 ERGIC3-207ENST00000438317 590 ntTSL 310.93□□□□□ -0.663e-7■■□□□ 12.8
RPS3P23396 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.013e-9■■□□□ 12.8
RPS3P23396 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.113e-9■■□□□ 12.8
RPS3P23396 MOGS-203ENST00000414701 520 ntTSL 314.22□□□□□ -0.135e-9■■□□□ 12.8
RPS3P23396 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.491e-7■■□□□ 12.8
RPS3P23396 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.5■■□□□ 1.671e-7■■□□□ 12.8
RPS3P23396 TM7SF2-219ENST00000530892 691 ntTSL 220.61■□□□□ 0.892e-16■■□□□ 12.8
RPS3P23396 FAM189B-206ENST00000481822 2103 ntTSL 218.69■□□□□ 0.581e-7■■□□□ 12.8
RPS3P23396 CHPF2-203ENST00000482173 548 ntTSL 418.5■□□□□ 0.551e-7■■□□□ 12.8
RPS3P23396 FAM189B-207ENST00000487649 1499 ntTSL 1 (best)18.15■□□□□ 0.51e-7■■□□□ 12.8
RPS3P23396 MPV17L-203ENST00000564148 529 ntTSL 417.43■□□□□ 0.381e-7■■□□□ 12.8
RPS3P23396 TNFRSF1A-209ENST00000536717 1503 ntTSL 217.3■□□□□ 0.361e-7■■□□□ 12.8
RPS3P23396 LEMD2-205ENST00000504692 643 ntTSL 316.86■□□□□ 0.291e-7■■□□□ 12.8
Retrieved 100 of 24,271 protein–RNA pairs in 194.5 ms