RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NISCHQ9Y2I1 1504 aa46.13■■■■■ 4.98
CLN3-250ENST00000636839 CCDC180Q9P1Z9 1646 aa40.18■■■■■ 4.02
CLN3-250ENST00000636839 ZCCHC6Q5VYS8 1495 aaKnown RBP38.67■■■■□ 3.78
CLN3-250ENST00000636839 ABCC9O60706 1549 aa38.53■■■■□ 3.76
CLN3-250ENST00000636839 DCAF8L2P0C7V8 631 aa38.45■■■■□ 3.74
CLN3-250ENST00000636839 DCAF1Q9Y4B6 1507 aa38.01■■■■□ 3.67
CLN3-250ENST00000636839 SHROOM4Q9ULL8 1493 aa37.7■■■■□ 3.63
CLN3-250ENST00000636839 MYO15BQ96JP2 1530 aa37.62■■■■□ 3.61
CLN3-250ENST00000636839 NACADO15069 1562 aa37.55■■■■□ 3.6
CLN3-250ENST00000636839 RB1CC1Q8TDY2 1594 aa37.31■■■■□ 3.56
CLN3-250ENST00000636839 SCRIBQ14160 1630 aa37.14■■■■□ 3.54
CLN3-250ENST00000636839 UNC13AQ9UPW8 1703 aa36.61■■■■□ 3.45
CLN3-250ENST00000636839 PABPN1Q86U42 306 aaKnown RBP eCLIP36.39■■■■□ 3.42
CLN3-250ENST00000636839 BICRAQ9NZM4 1560 aa36.3■■■■□ 3.4
CLN3-250ENST00000636839 SUPT5HO00267 1087 aaKnown RBP36.12■■■■□ 3.37
CLN3-250ENST00000636839 CECR2Q9BXF3 1484 aa36.01■■■■□ 3.35
CLN3-250ENST00000636839 RSF1Q96T23 1441 aaPredicted RBP35.76■■■■□ 3.32
CLN3-250ENST00000636839 MROH2BQ7Z745 1585 aa35.71■■■■□ 3.31
CLN3-250ENST00000636839 BAZ1AQ9NRL2 1556 aaPredicted RBP35.58■■■■□ 3.29
CLN3-250ENST00000636839 SMARCA4P51532 1647 aa35.5■■■■□ 3.27
CLN3-250ENST00000636839 WIZO95785 1651 aa35.4■■■■□ 3.26
CLN3-250ENST00000636839 EIF4G1Q04637 1599 aaKnown RBP35.2■■■■□ 3.23
CLN3-250ENST00000636839 ATAD2BQ9ULI0 1458 aa35.03■■■■□ 3.2
CLN3-250ENST00000636839 PEG3Q9GZU2 1588 aa35.01■■■■□ 3.19
CLN3-250ENST00000636839 TOP2AP11388 1531 aaKnown RBP34.92■■■■□ 3.18
CLN3-250ENST00000636839 SMARCA2P51531 1590 aa34.9■■■■□ 3.18
CLN3-250ENST00000636839 BAZ1BQ9UIG0 1483 aaKnown RBP34.79■■■■□ 3.16
CLN3-250ENST00000636839 CC2D2AQ9P2K1 1620 aa34.77■■■■□ 3.16
CLN3-250ENST00000636839 NCAPD3P42695 1498 aa34.73■■■■□ 3.15
CLN3-250ENST00000636839 CCDC88BA6NC98 1476 aa34.66■■■■□ 3.14
CLN3-250ENST00000636839 HMGXB3Q12766 1538 aa34.59■■■■□ 3.13
CLN3-250ENST00000636839 DNAJC5BQ9UF47 199 aa34.38■■■■□ 3.09
CLN3-250ENST00000636839 CHIC1Q5VXU3 224 aa34.38■■■■□ 3.09
CLN3-250ENST00000636839 CFTRP13569 1480 aa33.91■■■■□ 3.02
CLN3-250ENST00000636839 ABCC8Q09428 1581 aa33.9■■■■□ 3.02
CLN3-250ENST00000636839 TRIM41Q8WV44 630 aa33.88■■■■□ 3.01
CLN3-250ENST00000636839 CADPSQ9ULU8 1353 aa33.87■■■■□ 3.01
CLN3-250ENST00000636839 NESP48681 1621 aa33.78■■■■□ 3
CLN3-250ENST00000636839 WRNQ14191 1432 aaPredicted RBP eCLIP33.63■■■□□ 2.97
CLN3-250ENST00000636839 PRDM2Q13029 1718 aa33.55■■■□□ 2.96
CLN3-250ENST00000636839 LAMC3Q9Y6N6 1575 aa33.53■■■□□ 2.96
CLN3-250ENST00000636839 SYNJ1O43426 1573 aa33.52■■■□□ 2.96
CLN3-250ENST00000636839 FANCD2Q9BXW9 1451 aa33.49■■■□□ 2.95
CLN3-250ENST00000636839 FAM9AQ8IZU1 332 aaPredicted RBP33.41■■■□□ 2.94
CLN3-250ENST00000636839 CUX1P39880 1505 aa33.39■■■□□ 2.94
CLN3-250ENST00000636839 PDS5BQ9NTI5 1447 aa33.33■■■□□ 2.93
CLN3-250ENST00000636839 TOP2BQ02880 1626 aa33.32■■■□□ 2.92
CLN3-250ENST00000636839 CEP164Q9UPV0 1460 aa33.26■■■□□ 2.92
CLN3-250ENST00000636839 BIVM-ERCC5R4GMW8 1640 aa33.26■■■□□ 2.91
CLN3-250ENST00000636839 SOGA1O94964 1423 aa33.24■■■□□ 2.91
CLN3-250ENST00000636839 KIF21AQ7Z4S6 1674 aa33.23■■■□□ 2.91
CLN3-250ENST00000636839 LOC105371045A0A1W2PR82 267 aa33.18■■■□□ 2.9
CLN3-250ENST00000636839 RUSC2Q8N2Y8 1516 aa33.16■■■□□ 2.9
CLN3-250ENST00000636839 URB2Q14146 1524 aaKnown RBP33.13■■■□□ 2.89
CLN3-250ENST00000636839 TOPBP1Q92547 1522 aa33.1■■■□□ 2.89
CLN3-250ENST00000636839 DNMBPQ6XZF7 1577 aa33.07■■■□□ 2.88
CLN3-250ENST00000636839 EHMT2Q96KQ7 1210 aa33.06■■■□□ 2.88
CLN3-250ENST00000636839 FGD5Q6ZNL6 1462 aa33.05■■■□□ 2.88
CLN3-250ENST00000636839 ERCC6Q03468 1493 aa32.98■■■□□ 2.87
CLN3-250ENST00000636839 POLA1P09884 1462 aaPredicted RBP32.93■■■□□ 2.86
CLN3-250ENST00000636839 MRC2Q9UBG0 1479 aa32.93■■■□□ 2.86
CLN3-250ENST00000636839 RAD54L2Q9Y4B4 1467 aa32.91■■■□□ 2.86
CLN3-250ENST00000636839 CSRNP3Q8WYN3 585 aa32.9■■■□□ 2.86
CLN3-250ENST00000636839 EEA1Q15075 1411 aa32.86■■■□□ 2.85
CLN3-250ENST00000636839 CUX2O14529 1486 aa32.81■■■□□ 2.84
CLN3-250ENST00000636839 KIF27Q86VH2 1401 aa32.76■■■□□ 2.84
CLN3-250ENST00000636839 WDR62O43379 1518 aa32.75■■■□□ 2.83
CLN3-250ENST00000636839 THOC2Q8NI27 1593 aaKnown RBP32.72■■■□□ 2.83
CLN3-250ENST00000636839 ABCA10Q8WWZ4 1543 aa32.7■■■□□ 2.82
CLN3-250ENST00000636839 TDRD9Q8NDG6 1382 aaKnown RBP32.63■■■□□ 2.81
CLN3-250ENST00000636839 TARBP1Q13395 1621 aaKnown RBP32.6■■■□□ 2.81
CLN3-250ENST00000636839 IGF1RP08069 1367 aa32.6■■■□□ 2.81
CLN3-250ENST00000636839 WDR97A6NE52 1622 aa32.57■■■□□ 2.8
CLN3-250ENST00000636839 RAPGEF2Q9Y4G8 1499 aa32.52■■■□□ 2.8
CLN3-250ENST00000636839 UBTFP17480 764 aaKnown RBP32.51■■■□□ 2.79
CLN3-250ENST00000636839 PRXQ9BXM0 1461 aa32.5■■■□□ 2.79
CLN3-250ENST00000636839 KIF21BO75037 1637 aa32.49■■■□□ 2.79
CLN3-250ENST00000636839 GOLGA3Q08378 1498 aa32.49■■■□□ 2.79
CLN3-250ENST00000636839 IFT140Q96RY7 1462 aa32.46■■■□□ 2.79
CLN3-250ENST00000636839 ZNF608Q9ULD9 1512 aaPredicted RBP32.46■■■□□ 2.79
CLN3-250ENST00000636839 AQRO60306 1485 aaKnown RBP eCLIP32.45■■■□□ 2.796e-6■■■■□ 25.1
CLN3-250ENST00000636839 GAPVD1Q14C86 1478 aa32.44■■■□□ 2.78
CLN3-250ENST00000636839 ABCA5Q8WWZ7 1642 aa32.44■■■□□ 2.78
CLN3-250ENST00000636839 CARMIL1Q5VZK9 1371 aa32.4■■■□□ 2.78
CLN3-250ENST00000636839 TNIKQ9UKE5 1360 aa32.36■■■□□ 2.77
CLN3-250ENST00000636839 ERICH3Q5RHP9 1530 aa32.32■■■□□ 2.76
CLN3-250ENST00000636839 RANGAP1P46060 587 aaPredicted RBP32.22■■■□□ 2.75
CLN3-250ENST00000636839 CEP162Q5TB80 1403 aa32.22■■■□□ 2.75
CLN3-250ENST00000636839 EIF4G3O43432 1585 aaKnown RBP32.21■■■□□ 2.75
CLN3-250ENST00000636839 PBRM1Q86U86 1689 aa32.2■■■□□ 2.75
CLN3-250ENST00000636839 GRIN2BQ13224 1484 aa32.19■■■□□ 2.74
CLN3-250ENST00000636839 CUL7Q14999 1698 aa32.18■■■□□ 2.74
CLN3-250ENST00000636839 SNAPC4Q5SXM2 1469 aa32.07■■■□□ 2.72
CLN3-250ENST00000636839 FHAD1B1AJZ9 1412 aa32.05■■■□□ 2.72
CLN3-250ENST00000636839 ADAMTS12P58397 1594 aa32.04■■■□□ 2.72
CLN3-250ENST00000636839 CLIP1P30622 1438 aa32.02■■■□□ 2.72
CLN3-250ENST00000636839 MAGI1Q96QZ7 1491 aaPredicted RBP31.91■■■□□ 2.7
CLN3-250ENST00000636839 FBLN2P98095 1184 aa31.9■■■□□ 2.7
CLN3-250ENST00000636839 CHMP7Q8WUX9 453 aaPredicted RBP31.87■■■□□ 2.69
CLN3-250ENST00000636839 SYNJ2O15056 1496 aa31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms