RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 NISCHQ9Y2I1 1504 aa36.98■■■■□ 3.51
CLN3-222ENST00000566083 CCDC180Q9P1Z9 1646 aa33.14■■■□□ 2.89
CLN3-222ENST00000566083 ABCC9O60706 1549 aa32.94■■■□□ 2.86
CLN3-222ENST00000566083 RB1CC1Q8TDY2 1594 aa31.51■■■□□ 2.63
CLN3-222ENST00000566083 NACADO15069 1562 aa31.35■■■□□ 2.61
CLN3-222ENST00000566083 DCAF8L2P0C7V8 631 aa31.17■■■□□ 2.58
CLN3-222ENST00000566083 MYO15BQ96JP2 1530 aa31.01■■■□□ 2.56
CLN3-222ENST00000566083 DNAJC5BQ9UF47 199 aa30.74■■■□□ 2.51
CLN3-222ENST00000566083 PABPN1Q86U42 306 aaKnown RBP eCLIP30.69■■■□□ 2.5
CLN3-222ENST00000566083 ZCCHC6Q5VYS8 1495 aaKnown RBP30.67■■■□□ 2.5
CLN3-222ENST00000566083 DCAF1Q9Y4B6 1507 aa30.63■■■□□ 2.49
CLN3-222ENST00000566083 UNC13AQ9UPW8 1703 aa30.63■■■□□ 2.49
CLN3-222ENST00000566083 BICRAQ9NZM4 1560 aa30.46■■■□□ 2.47
CLN3-222ENST00000566083 SHROOM4Q9ULL8 1493 aa30.29■■■□□ 2.44
CLN3-222ENST00000566083 SCRIBQ14160 1630 aa30.1■■■□□ 2.41
CLN3-222ENST00000566083 CC2D2AQ9P2K1 1620 aa29.77■■■□□ 2.36
CLN3-222ENST00000566083 EIF4G1Q04637 1599 aaKnown RBP29.76■■■□□ 2.35
CLN3-222ENST00000566083 CECR2Q9BXF3 1484 aa29.71■■■□□ 2.35
CLN3-222ENST00000566083 NCAPD3P42695 1498 aa28.94■■■□□ 2.22
CLN3-222ENST00000566083 ATAD2BQ9ULI0 1458 aa28.82■■■□□ 2.2
CLN3-222ENST00000566083 SMARCA2P51531 1590 aa28.8■■■□□ 2.2
CLN3-222ENST00000566083 SMARCA4P51532 1647 aa28.78■■■□□ 2.2
CLN3-222ENST00000566083 BAZ1AQ9NRL2 1556 aaPredicted RBP28.73■■■□□ 2.19
CLN3-222ENST00000566083 HMGXB3Q12766 1538 aa28.71■■■□□ 2.19
CLN3-222ENST00000566083 BAZ1BQ9UIG0 1483 aaKnown RBP28.56■■■□□ 2.16
CLN3-222ENST00000566083 PEG3Q9GZU2 1588 aa28.56■■■□□ 2.16
CLN3-222ENST00000566083 ERCC6Q03468 1493 aa28.52■■■□□ 2.16
CLN3-222ENST00000566083 CUX2O14529 1486 aa28.45■■■□□ 2.14
CLN3-222ENST00000566083 MROH2BQ7Z745 1585 aa28.44■■■□□ 2.14
CLN3-222ENST00000566083 DNAJC5Q9H3Z4 198 aa28.36■■■□□ 2.13
CLN3-222ENST00000566083 NESP48681 1621 aa28.29■■■□□ 2.12
CLN3-222ENST00000566083 LAMC3Q9Y6N6 1575 aa28.25■■■□□ 2.11
CLN3-222ENST00000566083 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
CLN3-222ENST00000566083 CADPSQ9ULU8 1353 aa28.07■■■□□ 2.08
CLN3-222ENST00000566083 WIZO95785 1651 aa28.07■■■□□ 2.08
CLN3-222ENST00000566083 THOC2Q8NI27 1593 aaKnown RBP28■■■□□ 2.07
CLN3-222ENST00000566083 RSF1Q96T23 1441 aaPredicted RBP27.96■■■□□ 2.07
CLN3-222ENST00000566083 KIF21AQ7Z4S6 1674 aa27.92■■■□□ 2.06
CLN3-222ENST00000566083 TOP2AP11388 1531 aaKnown RBP27.81■■■□□ 2.04
CLN3-222ENST00000566083 MRC2Q9UBG0 1479 aa27.81■■■□□ 2.04
CLN3-222ENST00000566083 CFTRP13569 1480 aa27.76■■■□□ 2.03
CLN3-222ENST00000566083 CEP164Q9UPV0 1460 aa27.73■■■□□ 2.03
CLN3-222ENST00000566083 WDR62O43379 1518 aa27.72■■■□□ 2.03
CLN3-222ENST00000566083 FANCD2Q9BXW9 1451 aa27.7■■■□□ 2.03
CLN3-222ENST00000566083 CCDC88BA6NC98 1476 aa27.48■■□□□ 1.99
CLN3-222ENST00000566083 PRDM2Q13029 1718 aa27.42■■□□□ 1.98
CLN3-222ENST00000566083 URB2Q14146 1524 aaKnown RBP27.41■■□□□ 1.98
CLN3-222ENST00000566083 ABCC8Q09428 1581 aa27.26■■□□□ 1.95
CLN3-222ENST00000566083 OSCARQ8IYS5 282 aa27.21■■□□□ 1.95
CLN3-222ENST00000566083 IFT140Q96RY7 1462 aa27.21■■□□□ 1.95
CLN3-222ENST00000566083 TOPBP1Q92547 1522 aa27.18■■□□□ 1.94
CLN3-222ENST00000566083 DNMBPQ6XZF7 1577 aa27.1■■□□□ 1.93
CLN3-222ENST00000566083 ZNF608Q9ULD9 1512 aaPredicted RBP27.03■■□□□ 1.92
CLN3-222ENST00000566083 TRIM41Q8WV44 630 aa27.01■■□□□ 1.91
CLN3-222ENST00000566083 EIF4G3O43432 1585 aaKnown RBP26.9■■□□□ 1.9
CLN3-222ENST00000566083 POLA1P09884 1462 aaPredicted RBP26.9■■□□□ 1.9
CLN3-222ENST00000566083 TARBP1Q13395 1621 aaKnown RBP26.89■■□□□ 1.89
CLN3-222ENST00000566083 AQRO60306 1485 aaKnown RBP eCLIP26.85■■□□□ 1.896e-6■■■■□ 25.1
CLN3-222ENST00000566083 SOGA1O94964 1423 aa26.83■■□□□ 1.89
CLN3-222ENST00000566083 SUPT5HO00267 1087 aaKnown RBP26.82■■□□□ 1.88
CLN3-222ENST00000566083 RAD54L2Q9Y4B4 1467 aa26.76■■□□□ 1.87
CLN3-222ENST00000566083 WDR97A6NE52 1622 aa26.75■■□□□ 1.87
CLN3-222ENST00000566083 FGD5Q6ZNL6 1462 aa26.74■■□□□ 1.87
CLN3-222ENST00000566083 TDRD9Q8NDG6 1382 aaKnown RBP26.72■■□□□ 1.87
CLN3-222ENST00000566083 CUX1P39880 1505 aa26.71■■□□□ 1.87
CLN3-222ENST00000566083 FBLN2P98095 1184 aa26.7■■□□□ 1.86
CLN3-222ENST00000566083 RIMBP3CA6NJZ7 1639 aa26.68■■□□□ 1.86
CLN3-222ENST00000566083 RIMBP3BA6NNM3 1639 aa26.68■■□□□ 1.86
CLN3-222ENST00000566083 RIMBP3Q9UFD9 1639 aa26.68■■□□□ 1.86
CLN3-222ENST00000566083 ARHGEF11O15085 1522 aa26.66■■□□□ 1.86
CLN3-222ENST00000566083 CHD1O14646 1710 aa26.64■■□□□ 1.85
CLN3-222ENST00000566083 MAGI1Q96QZ7 1491 aaPredicted RBP26.6■■□□□ 1.85
CLN3-222ENST00000566083 GRIN2BQ13224 1484 aa26.59■■□□□ 1.85
CLN3-222ENST00000566083 CHMP7Q8WUX9 453 aaPredicted RBP26.57■■□□□ 1.84
CLN3-222ENST00000566083 SNAPC4Q5SXM2 1469 aa26.57■■□□□ 1.84
CLN3-222ENST00000566083 ABCA10Q8WWZ4 1543 aa26.5■■□□□ 1.83
CLN3-222ENST00000566083 GAPVD1Q14C86 1478 aa26.5■■□□□ 1.83
CLN3-222ENST00000566083 CYB5RLQ6IPT4 315 aa26.49■■□□□ 1.83
CLN3-222ENST00000566083 SYNJ2O15056 1496 aa26.48■■□□□ 1.83
CLN3-222ENST00000566083 WRNQ14191 1432 aaPredicted RBP eCLIP26.47■■□□□ 1.83
CLN3-222ENST00000566083 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
CLN3-222ENST00000566083 CLASP1Q7Z460 1538 aa26.39■■□□□ 1.82
CLN3-222ENST00000566083 PBRM1Q86U86 1689 aa26.38■■□□□ 1.81
CLN3-222ENST00000566083 ABCA5Q8WWZ7 1642 aa26.38■■□□□ 1.81
CLN3-222ENST00000566083 ARAP1Q96P48 1450 aa26.37■■□□□ 1.81
CLN3-222ENST00000566083 TOP2BQ02880 1626 aa26.37■■□□□ 1.81
CLN3-222ENST00000566083 BIVM-ERCC5R4GMW8 1640 aa26.34■■□□□ 1.81
CLN3-222ENST00000566083 GRIN2AQ12879 1464 aa26.22■■□□□ 1.79
CLN3-222ENST00000566083 FHAD1B1AJZ9 1412 aa26.2■■□□□ 1.79
CLN3-222ENST00000566083 ERICH3Q5RHP9 1530 aa26.19■■□□□ 1.78
CLN3-222ENST00000566083 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
CLN3-222ENST00000566083 ADAMTS12P58397 1594 aa26.17■■□□□ 1.78
CLN3-222ENST00000566083 NUP160Q12769 1436 aa26.14■■□□□ 1.77
CLN3-222ENST00000566083 CEP170Q5SW79 1584 aa26.05■■□□□ 1.76
CLN3-222ENST00000566083 SHROOM2Q13796 1616 aa25.96■■□□□ 1.75
CLN3-222ENST00000566083 KIF27Q86VH2 1401 aa25.94■■□□□ 1.74
CLN3-222ENST00000566083 JPH4Q96JJ6 628 aa25.92■■□□□ 1.74
CLN3-222ENST00000566083 ERCC6L2Q5T890 1561 aa25.9■■□□□ 1.74
CLN3-222ENST00000566083 PRG4Q92954 1404 aaPredicted RBP25.87■■□□□ 1.73
CLN3-222ENST00000566083 IGF1RP08069 1367 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms